Spo13957 (gene) | SpinachBase

Overview


Name	Spo13957
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Apocytochrome f (Precursor)
Location	SpoScf_04534 : 3464 .. 6471 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTATAGTTGATGATCATACTAGAGTGACATGGGTTCACCTGCTGAAAGCCAAGTCAGATGCATATCAAGCCATCTCCACCTTTGTGAAAATGGTAGAAACACAGCATGAGAAGAAAGTTAAAGTCATCAGGTCAGACAATGCACTTGAATTTGATGATAGCAAGTGTAGACCATTCTTTGATCAACTAGGTGTCATACACCAGACATCCTGTGTAAACAGACCACAACAGAATGGTCGAGTTGAAAGAAAACACAGGAACATACTTGAGATGTCTAGAGCAATAAGGTTTCACTCTGGCTAGCCTTTGAAATTTTGGGGTGATTGTGTACTTGCTGCAGTGCACATTACCAACAGACTGCCATCTTCTGTGATACAGAACAAGAATCCCTATGAAGCTTTGTACAACAAGAAACCCAAGTACAAACACCTTAAAGCCTTTGGGTGTTTAGCAATTGCAAGCAACCCTATCGAGTCTTGTTTCCACTTTTCCAGTCATTCTAGATACAATTTTGAAATATTGGATATTCCTTTCTTTAAATCGTGTATCCCCATCGCTTGTAGTGATTTATCATTCAATAAATAACTGAAAAGAAGAAAAAGGGTATACGGATATAAATCCAATTCAAATCTCTAATTCGAATGTTTGTTGCTTTGTACATAAAAATAATCAAAGCATTACAAATTGCACCCCCTCTTTACTATTTCTACCCGTCTCAGGCGGGGAGTTCCTCCGATATTCCAGTAATATTTTTTTTATTAAATTCAGTTTCAGTTAAAGTAAATAGCAGAATCGTGGATAGGAAACTTTACTAGCAACCTACCCAATTTATTGTATAAATTTTCGGAATCAATGGTTGGACTATGCAAACTATAAATACCTTTTCTTAGATAAAAGAACAGATTACTCGAACCATTTCCATATCACTTATATTATATATAATAACTCGGTCATCCATTGCGAATGCCTATCCCATTTTCGCACAGCAAGGTTATGAAAATCCACGAGAGGCGACGAGACGTATTGTATGTGCCAATTGCCATTTAGCTAATATGCCCGTGGATATTGAGGTTCCACAAGCGGTCCTTCCAGATACTGTATTTGAAGCAGTTGTTCGAATTCCTTATGATATGCAATTAAACAAGTTTTAGCTAACGGTAAAAAGGGTGGCTTGAATGTGGGGGCTGTTCTTATTTTACCTGAGGGATTTGAATTAGCCCCACCCGATCGTATTTCTCCAGAGATGAAAGAAAAGATAGGGAATCTTTCTTTTCAGAGCTATCGCCCCAATAAACAAAATACTCTTGTGATAGGTCCTGTTCCTGGGCAAAAATATAGTGAAATTACCTTTCCTATTCTTGCCCTGGACCCTGCCACTAAAAAAGACGTTCACTTCTTAAAATATCCGATATATGTAGGTGGTAACAGGGGAAGGGGTCAAATTTATTCTGACGGAAGCAAGAGTAATAATACAGTTTATAATTCCACAGCAACAGGTATAGTAATTGTACGAAAATAAAAGGGATCTGAGGATACGAAATAAACATAGCGGATGCCTCGGATGGACGTGAAGTGGTTGATATTATCCCTCGAGGACCAGAGCTTCTTGTTTCCGAGGGTGAATCTATCAAACTTGATCAACCATTAACGAGTAATCCTAATGTGGGTGGGTTTGGTCAGGGAGACGCAGAAATAGTACTTCAAGACCCACTGCGCATACAAGGTCTTTTGTTTTTCTTTGCGTCTGTTATTTTAGCACAAATATTTTTGGTTCTTAAAAAGAAACAATTCGAGAAGGTTCAATTGTCCGAAATGAATTTCTAGATTCGTGTATTAATCAAGCTTGTAACAATAACAAAAATTTTGTTGACAATTTTGGATGATTAATAAATCAAAAAATTATGAGAAGGTTTTTTTTTGTTTGTTTATACTTTCTTGTATATCTACGAGAAGGTTGGAATTACTTGTACGAGATTATTAGTTATAATATCTATTGGATTGCGAAGAAGACTACTTTCCTTTTTTCCAATCGAAATTCGACTAGATGCTAGACTAAAGGGGAAATATAACGAAAAGAATAATGAGGGGACAAAATGATTCTAGGGGGAGTTATTTTCCTTCCTGGTCTTCGACACACGACAAGTATGTGTAAATTTCCTTGTCGTGTGTCGAAATTGTAATGAGTCTTGATTCTCCTCGTCAAAGACTTAGTCGGAATTTTTTTCTTAGTATTACACTTATAAGGAGTGGACAAACTGAAAAAAAAGGAGAGAGGTAAATTTATGGAACAAATGGAACTTCTTGCATTCTAGTTAATCTAGAAAAATAAAGCTTCTATTGTGTCATTCAGTAAATCAAGTGATTACCTCTTTTTTTAACTTAACAATTTAGGAAGGATCAACAAGTACTATCAAGGAATATACGTTCTGAATGACCAAATAAATTTTCCAAAAACATCGAAAGGGGGATCCTCTTTTCATTTATACGAAAAAAATTATAAAATTATGATAATTAAAAAAAAAATTAATGGGACCTCCCCCTTCTTTGTTTGTCTAATTCGAGGGGGAAGGAAGATCTCGTTGAGTTCTTATACTTTCATATCTATACCTCGATTCATCTAATTACTACAGCGATGAGCCTAATCCAGAATATGAACCATAAAAGAAAATACCTACTAAACTGATCACAAGAATACCAGCTACAGTCCCTATTATCCAAAGAGGAATTCTTCCAGTAGTATCGGCCATTTACCCCACTTCCCTCCACATTTCATCAAGTTGTCGTGCTAGAGACATAAACAGTCATGGATAATTATGAAATGAGGTCCTTCCGAATAGGATAAGATAATTCCTACTCTATTCTATATATTTCTTTCGTTCTCTTTATTTAATTGAAAAAATAATTCGAAAATAAAACAGCAAGTACAAAAATGAGTAATAGCCCCCAATAAAGATGGGTACGATTCAATTCAACATTTTTTTCGTTCGGGTTTGATTGTGTCATAG

mRNA sequence

ATGACTATAGTTGATGATCATACTAGAGTGACATGGGTTCACCTGCTGAAAGCCAAGTCAGATGCATATCAAGCCATCTCCACCTTTGTGAAAATGGTAGAAACACAGCATGAGAAGAAAGTTAAAGTCATCAGGTCAGACAATGCACTTGAATTTGATGATAGCAAGTGTAGACCATTCTTTGATCAACTAGGTGTCATACACCAGACATCCTGTGTAAACAGACCACAACAGAATGGTCGAGTTGAAAGAAAACACAGGAACATACTTGAGATGTCTAGAGCAATAAGGGGAAGGGGTCAAATTTATTCTGACGGAAGCAAGAGTAATAATACAGTTTATAATTCCACAGCAACAGATGGGTACGATTCAATTCAACATTTTTTTCGTTCGGGTTTGATTGTGTCATAG

Coding sequence (CDS)

ATGACTATAGTTGATGATCATACTAGAGTGACATGGGTTCACCTGCTGAAAGCCAAGTCAGATGCATATCAAGCCATCTCCACCTTTGTGAAAATGGTAGAAACACAGCATGAGAAGAAAGTTAAAGTCATCAGGTCAGACAATGCACTTGAATTTGATGATAGCAAGTGTAGACCATTCTTTGATCAACTAGGTGTCATACACCAGACATCCTGTGTAAACAGACCACAACAGAATGGTCGAGTTGAAAGAAAACACAGGAACATACTTGAGATGTCTAGAGCAATAAGGGGAAGGGGTCAAATTTATTCTGACGGAAGCAAGAGTAATAATACAGTTTATAATTCCACAGCAACAGATGGGTACGATTCAATTCAACATTTTTTTCGTTCGGGTTTGATTGTGTCATAG

Protein sequence

MTIVDDHTRVTWVHLLKAKSDAYQAISTFVKMVETQHEKKVKVIRSDNALEFDDSKCRPFFDQLGVIHQTSCVNRPQQNGRVERKHRNILEMSRAIRGRGQIYSDGSKSNNTVYNSTATDGYDSIQHFFRSGLIVS

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo13957.1	Spo13957.1	mRNA

Homology

[Close]

BLAST of Spo13957.1 vs. NCBI nr
Match: gi|384977930|emb|CBL54154.1| (hypothetical protein (mitochondrion) [Beta vulgaris subsp. maritima])

HSP 1 Score: 146.7 bits (369), Expect = 2.900e-32
Identity = 69/97 (71.13%), Postives = 84/97 (86.60%), Query Frame = 1


		  
Query: 1   MTIVDDHTRVTWVHLLKAKSDAYQAISTFVKMVETQHEKKVKVIRSDNALEFDDSKCRPF 60
           MTIVDD++RV WV LLK KSDAY+AI  F+KMV+TQ+ K+VKVIRSDNA EF+D++C+  
Sbjct: 68  MTIVDDYSRVIWVQLLKQKSDAYEAIKGFLKMVKTQYGKQVKVIRSDNAFEFEDNQCKAL 127

Query: 61  FDQLGVIHQTSCVNRPQQNGRVERKHRNILEMSRAIR 98
           +   GV+HQTSCV+RPQQNGR ERKHRNILEMSRA+R
Sbjct: 128 YADQGVVHQTSCVDRPQQNGRAERKHRNILEMSRALR 164

[Close]

BLAST of Spo13957.1 vs. NCBI nr
Match: gi|731368565|ref|XP_010696216.1| (PREDICTED: uncharacterized protein LOC104908765 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 127.1 bits (318), Expect = 2.300e-26
Identity = 58/97 (59.79%), Postives = 75/97 (77.32%), Query Frame = 1


		  
Query: 1   MTIVDDHTRVTWVHLLKAKSDAYQAISTFVKMVETQHEKKVKVIRSDNALEFDDSKCRPF 60
           + IVDD+TR TWVHLLK KSD+   I +F     TQ ++KV++IRSDNALEF D  C  +
Sbjct: 341 LIIVDDYTRATWVHLLKNKSDSLSTIKSFCVFARTQFDRKVRIIRSDNALEFKDQGCVAW 400

Query: 61  FDQLGVIHQTSCVNRPQQNGRVERKHRNILEMSRAIR 98
           F   G++HQTSC++RPQQNG VERKHR++LE+SRA+R
Sbjct: 401 FTNQGIVHQTSCIDRPQQNGVVERKHRHLLEISRALR 437

[Close]

BLAST of Spo13957.1 vs. NCBI nr
Match: gi|1012331022|gb|KYP42518.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 120.2 bits (300), Expect = 2.900e-24
Identity = 54/97 (55.67%), Postives = 75/97 (77.32%), Query Frame = 1


		  
Query: 1   MTIVDDHTRVTWVHLLKAKSDAYQAISTFVKMVETQHEKKVKVIRSDNALEFDDSKCRPF 60
           +TIVDD TR  W++LLK K++    I  + +MV+TQ + KVKV+RSDN  +F +SK   F
Sbjct: 503 LTIVDDFTRAVWIYLLKDKTETTNVIINYYRMVQTQFDTKVKVVRSDNGTKFVNSKIHSF 562

Query: 61  FDQLGVIHQTSCVNRPQQNGRVERKHRNILEMSRAIR 98
           F ++G++HQTSCV+ PQQNGRVERKHR+IL ++RA+R
Sbjct: 563 FQEVGILHQTSCVSSPQQNGRVERKHRHILNVARALR 599

[Close]

BLAST of Spo13957.1 vs. NCBI nr
Match: gi|1012354477|gb|KYP65664.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 119.0 bits (297), Expect = 6.400e-24
Identity = 53/97 (54.64%), Postives = 73/97 (75.26%), Query Frame = 1


		  
Query: 1   MTIVDDHTRVTWVHLLKAKSDAYQAISTFVKMVETQHEKKVKVIRSDNALEFDDSKCRPF 60
           +TIVDD TR  WV+L+K KS+    I  F K++E Q +KKVK++RSDN  EF +++ + F
Sbjct: 221 LTIVDDFTRAVWVYLIKEKSETPNIIINFCKLIERQFDKKVKIVRSDNGTEFTNTRIQSF 280

Query: 61  FDQLGVIHQTSCVNRPQQNGRVERKHRNILEMSRAIR 98
           F   G++HQ SCV RPQQNGRV+RKHR+IL ++RA+R
Sbjct: 281 FQDEGIVHQVSCVGRPQQNGRVKRKHRHILNVARALR 317

[Close]

BLAST of Spo13957.1 vs. NCBI nr
Match: gi|111183162|gb|ABH07899.1| (putative polyprotein [Solanum lycopersicum])

HSP 1 Score: 117.1 bits (292), Expect = 2.400e-23
Identity = 54/97 (55.67%), Postives = 72/97 (74.23%), Query Frame = 1


		  
Query: 1   MTIVDDHTRVTWVHLLKAKSDAYQAISTFVKMVETQHEKKVKVIRSDNALEFDDSKCRPF 60
           +TIVDD++R  WVHLL+ KS+   AI  F  M+ TQ    VKV+RSDN  EF +S+C+  
Sbjct: 581 LTIVDDYSRFVWVHLLQLKSETIVAIKNFFSMINTQFNSHVKVVRSDNGTEFLNSQCKDL 640

Query: 61  FDQLGVIHQTSCVNRPQQNGRVERKHRNILEMSRAIR 98
           F+ LG++HQ+SC + PQQNG VERKHR+IL ++RAIR
Sbjct: 641 FNHLGILHQSSCPHTPQQNGVVERKHRHILNIARAIR 677

[Close]

BLAST of Spo13957.1 vs. UniProtKB/TrEMBL
Match: F4MLC7_BETVM (Uncharacterized protein OS=Beta vulgaris subsp. maritima GN=orf266 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.000e-32
Identity = 69/97 (71.13%), Postives = 84/97 (86.60%), Query Frame = 1


		  
Query: 1   MTIVDDHTRVTWVHLLKAKSDAYQAISTFVKMVETQHEKKVKVIRSDNALEFDDSKCRPF 60
           MTIVDD++RV WV LLK KSDAY+AI  F+KMV+TQ+ K+VKVIRSDNA EF+D++C+  
Sbjct: 68  MTIVDDYSRVIWVQLLKQKSDAYEAIKGFLKMVKTQYGKQVKVIRSDNAFEFEDNQCKAL 127

Query: 61  FDQLGVIHQTSCVNRPQQNGRVERKHRNILEMSRAIR 98
           +   GV+HQTSCV+RPQQNGR ERKHRNILEMSRA+R
Sbjct: 128 YADQGVVHQTSCVDRPQQNGRAERKHRNILEMSRALR 164

[Close]

BLAST of Spo13957.1 vs. UniProtKB/TrEMBL
Match: A0A151RJ05_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_036101 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.000e-24
Identity = 54/97 (55.67%), Postives = 75/97 (77.32%), Query Frame = 1


		  
Query: 1   MTIVDDHTRVTWVHLLKAKSDAYQAISTFVKMVETQHEKKVKVIRSDNALEFDDSKCRPF 60
           +TIVDD TR  W++LLK K++    I  + +MV+TQ + KVKV+RSDN  +F +SK   F
Sbjct: 503 LTIVDDFTRAVWIYLLKDKTETTNVIINYYRMVQTQFDTKVKVVRSDNGTKFVNSKIHSF 562

Query: 61  FDQLGVIHQTSCVNRPQQNGRVERKHRNILEMSRAIR 98
           F ++G++HQTSCV+ PQQNGRVERKHR+IL ++RA+R
Sbjct: 563 FQEVGILHQTSCVSSPQQNGRVERKHRHILNVARALR 599

[Close]

BLAST of Spo13957.1 vs. UniProtKB/TrEMBL
Match: A0A151TF42_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_011922 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 4.500e-24
Identity = 53/97 (54.64%), Postives = 73/97 (75.26%), Query Frame = 1


		  
Query: 1   MTIVDDHTRVTWVHLLKAKSDAYQAISTFVKMVETQHEKKVKVIRSDNALEFDDSKCRPF 60
           +TIVDD TR  WV+L+K KS+    I  F K++E Q +KKVK++RSDN  EF +++ + F
Sbjct: 221 LTIVDDFTRAVWVYLIKEKSETPNIIINFCKLIERQFDKKVKIVRSDNGTEFTNTRIQSF 280

Query: 61  FDQLGVIHQTSCVNRPQQNGRVERKHRNILEMSRAIR 98
           F   G++HQ SCV RPQQNGRV+RKHR+IL ++RA+R
Sbjct: 281 FQDEGIVHQVSCVGRPQQNGRVKRKHRHILNVARALR 317

[Close]

BLAST of Spo13957.1 vs. UniProtKB/TrEMBL
Match: Q0PY40_SOLLC (Putative polyprotein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.700e-23
Identity = 54/97 (55.67%), Postives = 72/97 (74.23%), Query Frame = 1


		  
Query: 1   MTIVDDHTRVTWVHLLKAKSDAYQAISTFVKMVETQHEKKVKVIRSDNALEFDDSKCRPF 60
           +TIVDD++R  WVHLL+ KS+   AI  F  M+ TQ    VKV+RSDN  EF +S+C+  
Sbjct: 581 LTIVDDYSRFVWVHLLQLKSETIVAIKNFFSMINTQFNSHVKVVRSDNGTEFLNSQCKDL 640

Query: 61  FDQLGVIHQTSCVNRPQQNGRVERKHRNILEMSRAIR 98
           F+ LG++HQ+SC + PQQNG VERKHR+IL ++RAIR
Sbjct: 641 FNHLGILHQSSCPHTPQQNGVVERKHRHILNIARAIR 677

[Close]

BLAST of Spo13957.1 vs. UniProtKB/TrEMBL
Match: A0A0V0I1Y7_SOLCH (Putative ovule protein (Fragment) OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.900e-23
Identity = 55/102 (53.92%), Postives = 74/102 (72.55%), Query Frame = 1


		  
Query: 1   MTIVDDHTRVTWVHLLKAKSDAYQAISTFVKMVETQHEKKVKVIRSDNALEFDDSKCRPF 60
           +TIVDD +R+TWV LLK K+D +  +  F+  V+TQ  K VKV+R+DN  EF +S C   
Sbjct: 72  LTIVDDFSRMTWVFLLKFKTDVFVQMKHFLSYVQTQFNKVVKVVRTDNGSEFVNSLCNSL 131

Query: 61  FDQLGVIHQTSCVNRPQQNGRVERKHRNILEMSRAIRGRGQI 103
           F  LG++HQTSC   PQQNG  ERKHR+ILE++RA+R +G+I
Sbjct: 132 FKSLGIVHQTSCAYTPQQNGVAERKHRHILEVTRALRFQGEI 173

[Close]

BLAST of Spo13957.1 vs. ExPASy Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.400e-10
Identity = 32/96 (33.33%), Postives = 53/96 (55.21%), Query Frame = 1


		  
Query: 1   MTIVDDHTRVTWVHLLKAKSDAYQAISTFVKMVETQHEKKVKVIRSDNALEFDDSKCRPF 60
           +T +DD +R  WV++LK K   +Q    F  +VE +  +K+K +RSDN  E+   +   +
Sbjct: 504 VTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEY 563

Query: 61  FDQLGVIHQTSCVNRPQQNGRVERKHRNILEMSRAI 97
               G+ H+ +    PQ NG  ER +R I+E  R++
Sbjct: 564 CSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSM 599

The following BLAST results are available for this feature:

BLAST of Spo13957.1 vs. NCBI nr
BLAST of Spo13957.1 vs. UniProtKB/TrEMBL
BLAST of Spo13957.1 vs. ExPASy Swiss-Prot
BLAST of Spo13957.1 vs. TAIR (Arabidopsis)

BLAST of Spo13957.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|384977930\|emb\|CBL54154.1\|	2.9e-32	71.1	hypothetical protein (mitochon...	[more]
gi\|731368565\|ref\|XP_010696216.1\|	2.3e-26	59.7	PREDICTED: uncharacterized pro...	[more]
gi\|1012331022\|gb\|KYP42518.1\|	2.9e-24	55.6	Retrovirus-related Pol polypro...	[more]
gi\|1012354477\|gb\|KYP65664.1\|	6.4e-24	54.6	Retrovirus-related Pol polypro...	[more]
gi\|111183162\|gb\|ABH07899.1\|	2.4e-23	55.6	putative polyprotein [Solanum ...	[more]

BLAST of Spo13957.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
F4MLC7_BETVM	2.0e-32	71.1	Uncharacterized protein OS=Bet...	[more]
A0A151RJ05_CAJCA	2.0e-24	55.6	Retrovirus-related Pol polypro...	[more]
A0A151TF42_CAJCA	4.5e-24	54.6	Retrovirus-related Pol polypro...	[more]
Q0PY40_SOLLC	1.7e-23	55.6	Putative polyprotein OS=Solanu...	[more]
A0A0V0I1Y7_SOLCH	2.9e-23	53.9	Putative ovule protein (Fragme...	[more]

BLAST of Spo13957.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1


Match Name	E-value	Identity	Description
POLX_TOBAC	1.4e-10	33.3	Retrovirus-related Pol polypro...	[more]

BLAST of Spo13957.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 2..90 score: 1.6
IPR001584	Integrase, catalytic core	PROFILE	PS50994	INTEGRASE	coord: 1..92 score: 12
IPR012337	Ribonuclease H-like domain	GENE3D	3.30.420.10		coord: 1..96 score: 8.1
IPR012337	Ribonuclease H-like domain	unknown	SSF53098	Ribonuclease H-like	coord: 1..99 score: 8.6
IPR024094	Cytochrome f large domain	GENE3D	2.60.40.830		coord: 97..112 score: 1.
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 1..96 score: 1.2
None	No IPR available	PANTHER	PTHR11439:SF185	SUBFAMILY NOT NAMED	coord: 1..96 score: 1.2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006412	translation
biological_process	GO:0006354	DNA-templated transcription, elongation
biological_process	GO:0009769	photosynthesis, light harvesting in photosystem II
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0015979	photosynthesis
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0005840	ribosome
cellular_component	GO:0010287	plastoglobule
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0030076	light-harvesting complex
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0045157	electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0046872	metal ion binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo10627	0.75	Barchart \| Table
Spo04277	0.72	Barchart \| Table
Spo24717	0.72	Barchart \| Table
Spo24719	0.72	Barchart \| Table
Spo24708	0.72	Barchart \| Table
Spo06200	0.72	Barchart \| Table
Spo06201	0.72	Barchart \| Table
Spo22445	0.72	Barchart \| Table
Spo22572	0.72	Barchart \| Table
Spo17010	0.71	Barchart \| Table
Spo04278	0.71	Barchart \| Table
Spo26126	0.70	Barchart \| Table
Spo19560	0.70	Barchart \| Table
Spo24718	0.70	Barchart \| Table
Spo25555	0.69	Barchart \| Table
Spo24707	0.69	Barchart \| Table
Spo05875	0.69	Barchart \| Table
Spo02851	0.68	Barchart \| Table
Spo25538	0.68	Barchart \| Table
Spo13959	0.67	Barchart \| Table
Spo18044	0.66	Barchart \| Table
Spo16490	0.66	Barchart \| Table
Spo01748	0.66	Barchart \| Table