Spo14063 (gene)

Overview
NameSpo14063
Typegene
OrganismSpinacia oleracea (Spinach)
Description40S ribosomal protein S20-2
LocationSpoScf_08507 : 1433 .. 2730 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCCTGTATTTCGCTAGAGCTCGAAGCCGCCGAAGTTTGATTTTCTCTCCCTTTGCACCGTCGCACGCATTTTCTACTTCAGGTGCTCTTTTCATCTCTCTTCTCGCAGTCGCTGTAGATTTCAATCTTTGTTTTTTCTCAATTTCTTTTTGCTTTTAGTAGCAAAAATGGCGTACCCAATGAAGCCAACGAAGCCGGGAGTGGAGGAATCACAAGAACCCACTCACAAGATTAGAATTACCCTTTCTTCGAAGGATGTTAAGAATCTCGAGAAAGGTATCACATTTATTTTCTTCGATTTGTTATTTTTTTGTTTCAGATTTCTTCAATTTGTACTTATATTTTGTGCAATTATAATTAGTGCTTAGGTTTGGAGTGTTTTGGGATTTAACTTATTGCTTTAAATGTTTGTATGTGTTATCCAATATGAGGGCTGTAGTTTAATTTTGTGGGGGGTTTCGGATGAAAATTGATTAAGATTCTACCTGATAAACTATAATGATCGATAAATCGGGATGTTGTTGAGGGAGGTAAACTATAATTGATTTAACTTATTGCTTTAAATTAATTTGTTTCTGTCTTGAAGTCAATTTATGAAAATTTCTTTGACTTGTCTTAATATGTTGAACAGTTTGTGCTGATCTTGTGCGGGGTGCAAAGGACAAACACCTGAGGGTCAAGGGACCTGTCAGGATGCCAACCAAGGTTCTGAAGATTACAACTAGGAAGTCTCCTTGTGGTGAAGGTAGGTAAACATTGATGAAAATGTACCATGTATTGCTTATTAGAATTCATTTTAATGGTTGTTGGTAATTGATGAGTTTCATATGAGAATCATCAATCCCGTACTTAATTTGGTTTCACATGATAGGAAAACTGTTGTAGCTATATGGAACACAAGTTGGCTGTTTATTACAGTATTGTTTTCTCTTTGTATGCCTCATGCAGTAAGGATAACTTAATCCTGTGGCTTTGATATCATCCCTGCAAACTCATGAATCTGTATTTTGGTCTAGGCTTTGTCAGTTGGTCGTCTATGCAGGAGATGTAAGGAGATACCTAGTGATTTTTTATGTTAGGGTTTAGTGATAGTAGATGCAGAATGCTGAATCTTTTTCCACTGTTATTTGCACATAAGCTTCATTGAATTCAACTGCGCATATCTTTTTGATGCAGGAACCAACACCTTTGACAGATTCGAGTTACGTGTTCACAAGAGAGTAATTGACCTCTTCAGCTCCCCAGATGTGGTCAAGCAGATTACTTCCATCACCATTGAACCTGGCGTTGAGGTTGAG

mRNA sequence

TGCCTGTATTTCGCTAGAGCTCGAAGCCGCCGAAGTTTGATTTTCTCTCCCTTTGCACCGTCGCACGCATTTTCTACTTCAGCAAAAATGGCGTACCCAATGAAGCCAACGAAGCCGGGAGTGGAGGAATCACAAGAACCCACTCACAAGATTAGAATTACCCTTTCTTCGAAGGATGTTAAGAATCTCGAGAAAGTTTGTGCTGATCTTGTGCGGGGTGCAAAGGACAAACACCTGAGGGTCAAGGGACCTGTCAGGATGCCAACCAAGGTTCTGAAGATTACAACTAGGAAGTCTCCTTGTGGTGAAGGAACCAACACCTTTGACAGATTCGAGTTACGTGTTCACAAGAGAGTAATTGACCTCTTCAGCTCCCCAGATGTGGTCAAGCAGATTACTTCCATCACCATTGAACCTGGCGTTGAGGTTGAG

Coding sequence (CDS)

ATGGCGTACCCAATGAAGCCAACGAAGCCGGGAGTGGAGGAATCACAAGAACCCACTCACAAGATTAGAATTACCCTTTCTTCGAAGGATGTTAAGAATCTCGAGAAAGTTTGTGCTGATCTTGTGCGGGGTGCAAAGGACAAACACCTGAGGGTCAAGGGACCTGTCAGGATGCCAACCAAGGTTCTGAAGATTACAACTAGGAAGTCTCCTTGTGGTGAAGGAACCAACACCTTTGACAGATTCGAGTTACGTGTTCACAAGAGAGTAATTGACCTCTTCAGCTCCCCAGATGTGGTCAAGCAGATTACTTCCATCACCATTGAACCTGGCGTTGAGGTTGAG

Protein sequence

MAYPMKPTKPGVEESQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKHLRVKGPVRMPTKVLKITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo14063.1Spo14063.1mRNA


Homology
[Close]
BLAST of Spo14063.1 vs. NCBI nr
Match: gi|902200956|gb|KNA13866.1| (hypothetical protein SOVF_112580 [Spinacia oleracea])

HSP 1 Score: 231.1 bits (588), Expect = 9.800e-58
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1 

		  

Query: 1   MAYPMKPTKPGVEESQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKHLRVKGPVRMPT 60
           MAYPMKPTKPGVEESQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKHLRVKGPVRMPT
Sbjct: 1   MAYPMKPTKPGVEESQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKHLRVKGPVRMPT 60

Query: 61  KVLKITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 116
           KVLKITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE
Sbjct: 61  KVLKITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 115
[Close]
BLAST of Spo14063.1 vs. NCBI nr
Match: gi|731322607|ref|XP_010671990.1| (PREDICTED: 40S ribosomal protein S20-2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 223.0 bits (567), Expect = 2.700e-55
Identity = 111/115 (96.52%), Postives = 114/115 (99.13%), Query Frame = 1 

		  

Query: 1   MAYPMKPTKPGVEESQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKHLRVKGPVRMPT 60
           MAYPMKPTKPG+EESQE THKIRITLSSK+VKNLEKVCADLVRGAKDKHLRVKGPVRMPT
Sbjct: 1   MAYPMKPTKPGMEESQETTHKIRITLSSKNVKNLEKVCADLVRGAKDKHLRVKGPVRMPT 60

Query: 61  KVLKITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 116
           KVLKITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE
Sbjct: 61  KVLKITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 115
[Close]
BLAST of Spo14063.1 vs. NCBI nr
Match: gi|902217465|gb|KNA17727.1| (hypothetical protein SOVF_077440 [Spinacia oleracea])

HSP 1 Score: 220.3 bits (560), Expect = 1.700e-54
Identity = 109/115 (94.78%), Postives = 113/115 (98.26%), Query Frame = 1 

		  

Query: 1   MAYPMKPTKPGVEESQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKHLRVKGPVRMPT 60
           MAYP+KP KPG+EE+QEPTHKIRITLSSKDVKNLEKVCADLVRGAKDK LRVKGPVRMPT
Sbjct: 1   MAYPIKPNKPGMEETQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 60

Query: 61  KVLKITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 116
           KVLKITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE
Sbjct: 61  KVLKITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 115
[Close]
BLAST of Spo14063.1 vs. NCBI nr
Match: gi|731377209|ref|XP_010667811.1| (PREDICTED: 40S ribosomal protein S20-2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 219.9 bits (559), Expect = 2.200e-54
Identity = 110/115 (95.65%), Postives = 113/115 (98.26%), Query Frame = 1 

		  

Query: 1   MAYPMKPTKPGVEESQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKHLRVKGPVRMPT 60
           MAYPMKPTKPG+EESQE THKIRITLSSK+VKNLEKVCADLVRGAKDK LRVKGPVRMPT
Sbjct: 1   MAYPMKPTKPGMEESQETTHKIRITLSSKNVKNLEKVCADLVRGAKDKQLRVKGPVRMPT 60

Query: 61  KVLKITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 116
           KVLKITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE
Sbjct: 61  KVLKITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 115
[Close]
BLAST of Spo14063.1 vs. NCBI nr
Match: gi|955352209|ref|XP_014619850.1| (PREDICTED: 40S ribosomal protein S20-2-like [Glycine max])

HSP 1 Score: 209.9 bits (533), Expect = 2.300e-51
Identity = 107/116 (92.24%), Postives = 111/116 (95.69%), Query Frame = 1 

		  

Query: 1   MAYP-MKPTKPGVEESQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKHLRVKGPVRMP 60
           MAY  MKPTKPG+EESQE  HKIRITLSSK+VKNLEKVCADLVRGAKDKHLRVKGPVRMP
Sbjct: 5   MAYAAMKPTKPGLEESQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKHLRVKGPVRMP 64

Query: 61  TKVLKITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 116
           TKVL ITTRKSPCGEGTNT+DRFELRVHKRVIDL+SSPDVVKQITSITIEPGVEVE
Sbjct: 65  TKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVE 120
[Close]
BLAST of Spo14063.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R2W8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_112580 PE=3 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 6.800e-58
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1 

		  

Query: 1   MAYPMKPTKPGVEESQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKHLRVKGPVRMPT 60
           MAYPMKPTKPGVEESQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKHLRVKGPVRMPT
Sbjct: 1   MAYPMKPTKPGVEESQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKHLRVKGPVRMPT 60

Query: 61  KVLKITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 116
           KVLKITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE
Sbjct: 61  KVLKITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 115
[Close]
BLAST of Spo14063.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RFX4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_077440 PE=3 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.200e-54
Identity = 109/115 (94.78%), Postives = 113/115 (98.26%), Query Frame = 1 

		  

Query: 1   MAYPMKPTKPGVEESQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKHLRVKGPVRMPT 60
           MAYP+KP KPG+EE+QEPTHKIRITLSSKDVKNLEKVCADLVRGAKDK LRVKGPVRMPT
Sbjct: 1   MAYPIKPNKPGMEETQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 60

Query: 61  KVLKITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 116
           KVLKITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE
Sbjct: 61  KVLKITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 115
[Close]
BLAST of Spo14063.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B5L7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_012430 PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.600e-54
Identity = 110/115 (95.65%), Postives = 113/115 (98.26%), Query Frame = 1 

		  

Query: 1   MAYPMKPTKPGVEESQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKHLRVKGPVRMPT 60
           MAYPMKPTKPG+EESQE THKIRITLSSK+VKNLEKVCADLVRGAKDK LRVKGPVRMPT
Sbjct: 1   MAYPMKPTKPGMEESQETTHKIRITLSSKNVKNLEKVCADLVRGAKDKQLRVKGPVRMPT 60

Query: 61  KVLKITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 116
           KVLKITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE
Sbjct: 61  KVLKITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 115
[Close]
BLAST of Spo14063.1 vs. UniProtKB/TrEMBL
Match: A0A0B2RGQ7_GLYSO (40S ribosomal protein S20-2 OS=Glycine soja GN=glysoja_026344 PE=3 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 1.600e-51
Identity = 107/116 (92.24%), Postives = 111/116 (95.69%), Query Frame = 1 

		  

Query: 1   MAYP-MKPTKPGVEESQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKHLRVKGPVRMP 60
           MAY  MKPTKPG+EESQE  HKIRITLSSK+VKNLEKVCADLVRGAKDKHLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEESQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKHLRVKGPVRMP 60

Query: 61  TKVLKITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 116
           TKVL ITTRKSPCGEGTNT+DRFELRVHKRVIDL+SSPDVVKQITSITIEPGVEVE
Sbjct: 61  TKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVE 116
[Close]
BLAST of Spo14063.1 vs. UniProtKB/TrEMBL
Match: I1M7C7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_14G044100 PE=3 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 1.600e-51
Identity = 107/116 (92.24%), Postives = 111/116 (95.69%), Query Frame = 1 

		  

Query: 1   MAYP-MKPTKPGVEESQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKHLRVKGPVRMP 60
           MAY  MKPTKPG+EESQE  HKIRITLSSK+VKNLEKVCADLVRGAKDKHLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEESQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKHLRVKGPVRMP 60

Query: 61  TKVLKITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 116
           TKVL ITTRKSPCGEGTNT+DRFELRVHKRVIDL+SSPDVVKQITSITIEPGVEVE
Sbjct: 61  TKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVE 116
[Close]
BLAST of Spo14063.1 vs. ExPASy Swiss-Prot
Match: RS202_ARATH (40S ribosomal protein S20-2 OS=Arabidopsis thaliana GN=RPS20B PE=2 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.200e-50
Identity = 103/116 (88.79%), Postives = 107/116 (92.24%), Query Frame = 1 

		  

Query: 1   MAY-PMKPTKPGVEESQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKHLRVKGPVRMP 60
           MAY PMKPTK G+E   E  HKIRITLSSK+VKNLEKVC DLVRGAKDK LRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLKITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 116
           TKVLKITTRK+PCGEGTNT+DRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 116
[Close]
BLAST of Spo14063.1 vs. ExPASy Swiss-Prot
Match: RS201_ARATH (40S ribosomal protein S20-1 OS=Arabidopsis thaliana GN=RPS20A PE=2 SV=2)

HSP 1 Score: 198.0 bits (502), Expect = 5.700e-50
Identity = 100/112 (89.29%), Postives = 104/112 (92.86%), Query Frame = 1 

		  

Query: 4   PMKPTKPGVEESQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKHLRVKGPVRMPTKVL 63
           PMKP K G+EE  E  HKIRITLSSK+VKNLEKVC DLVRGAKDK LRVKGPVRMPTKVL
Sbjct: 7   PMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL 66

Query: 64  KITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 116
           KITTRK+PCGEGTNT+DRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE
Sbjct: 67  KITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 118
[Close]
BLAST of Spo14063.1 vs. ExPASy Swiss-Prot
Match: RS20_ORYSJ (40S ribosomal protein S20 OS=Oryza sativa subsp. japonica GN=RPS20 PE=2 SV=2)

HSP 1 Score: 184.5 bits (467), Expect = 6.600e-46
Identity = 95/114 (83.33%), Postives = 100/114 (87.72%), Query Frame = 1 

		  

Query: 2   AYPMKPTKPGVEESQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKHLRVKGPVRMPTK 61
           A PMK  K G E SQE  H+IRITLSSK VKNLEKVC DLV+GAKDK L+VKGPVRMPTK
Sbjct: 9   APPMKSGKIGFESSQEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMPTK 68

Query: 62  VLKITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 116
           VL ITTRKSPCGEGTNT+DRFE+RVHKRVIDL SS DVVKQITSITIEPGVEVE
Sbjct: 69  VLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVE 122
[Close]
BLAST of Spo14063.1 vs. ExPASy Swiss-Prot
Match: RS20_HUMAN (40S ribosomal protein S20 OS=Homo sapiens GN=RPS20 PE=1 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 3.300e-37
Identity = 72/102 (70.59%), Postives = 93/102 (91.18%), Query Frame = 1 

		  

Query: 14  ESQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKHLRVKGPVRMPTKVLKITTRKSPCG 73
           E +   H+IRITL+S++VK+LEKVCADL+RGAK+K+L+VKGPVRMPTK L+ITTRK+PCG
Sbjct: 12  EPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCG 71

Query: 74  EGTNTFDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 116
           EG+ T+DRF++R+HKR+IDL S  ++VKQITSI+IEPGVEVE
Sbjct: 72  EGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVE 113
[Close]
BLAST of Spo14063.1 vs. ExPASy Swiss-Prot
Match: RS20_BOVIN (40S ribosomal protein S20 OS=Bos taurus GN=RPS20 PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 3.300e-37
Identity = 72/102 (70.59%), Postives = 93/102 (91.18%), Query Frame = 1 

		  

Query: 14  ESQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKHLRVKGPVRMPTKVLKITTRKSPCG 73
           E +   H+IRITL+S++VK+LEKVCADL+RGAK+K+L+VKGPVRMPTK L+ITTRK+PCG
Sbjct: 12  EPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCG 71

Query: 74  EGTNTFDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 116
           EG+ T+DRF++R+HKR+IDL S  ++VKQITSI+IEPGVEVE
Sbjct: 72  EGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVE 113
[Close]
BLAST of Spo14063.1 vs. TAIR (Arabidopsis)
Match: AT3G47370.2 (Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 200.3 bits (508), Expect = 6.500e-52
Identity = 103/116 (88.79%), Postives = 107/116 (92.24%), Query Frame = 1 

		  

Query: 1   MAY-PMKPTKPGVEESQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKHLRVKGPVRMP 60
           MAY PMKPTK G+E   E  HKIRITLSSK+VKNLEKVC DLVRGAKDK LRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLKITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 116
           TKVLKITTRK+PCGEGTNT+DRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 116
[Close]
BLAST of Spo14063.1 vs. TAIR (Arabidopsis)
Match: AT3G45030.1 (Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 198.0 bits (502), Expect = 3.200e-51
Identity = 100/112 (89.29%), Postives = 104/112 (92.86%), Query Frame = 1 

		  

Query: 4   PMKPTKPGVEESQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKHLRVKGPVRMPTKVL 63
           PMKP K G+EE  E  HKIRITLSSK+VKNLEKVC DLVRGAKDK LRVKGPVRMPTKVL
Sbjct: 7   PMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL 66

Query: 64  KITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 116
           KITTRK+PCGEGTNT+DRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE
Sbjct: 67  KITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 118
[Close]
BLAST of Spo14063.1 vs. TAIR (Arabidopsis)
Match: AT5G62300.1 (Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 198.0 bits (502), Expect = 3.200e-51
Identity = 100/112 (89.29%), Postives = 104/112 (92.86%), Query Frame = 1 

		  

Query: 4   PMKPTKPGVEESQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKHLRVKGPVRMPTKVL 63
           PMKP K G+EE  E  HKIRITLSSK+VKNLEKVC DLVRGAKDK LRVKGPVRMPTKVL
Sbjct: 7   PMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL 66

Query: 64  KITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 116
           KITTRK+PCGEGTNT+DRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE
Sbjct: 67  KITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVE 118
The following BLAST results are available for this feature:
BLAST of Spo14063.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902200956|gb|KNA13866.1|9.8e-58100.hypothetical protein SOVF_1125... [more]
gi|731322607|ref|XP_010671990.1|2.7e-5596.5PREDICTED: 40S ribosomal prote... [more]
gi|902217465|gb|KNA17727.1|1.7e-5494.7hypothetical protein SOVF_0774... [more]
gi|731377209|ref|XP_010667811.1|2.2e-5495.6PREDICTED: 40S ribosomal prote... [more]
gi|955352209|ref|XP_014619850.1|2.3e-5192.2PREDICTED: 40S ribosomal prote... [more]
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BLAST of Spo14063.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9R2W8_SPIOL6.8e-58100.Uncharacterized protein OS=Spi... [more]
A0A0K9RFX4_SPIOL1.2e-5494.7Uncharacterized protein OS=Spi... [more]
A0A0J8B5L7_BETVU1.6e-5495.6Uncharacterized protein OS=Bet... [more]
A0A0B2RGQ7_GLYSO1.6e-5192.240S ribosomal protein S20-2 OS... [more]
I1M7C7_SOYBN1.6e-5192.2Uncharacterized protein OS=Gly... [more]
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BLAST of Spo14063.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RS202_ARATH1.2e-5088.740S ribosomal protein S20-2 OS... [more]
RS201_ARATH5.7e-5089.240S ribosomal protein S20-1 OS... [more]
RS20_ORYSJ6.6e-4683.340S ribosomal protein S20 OS=O... [more]
RS20_HUMAN3.3e-3770.540S ribosomal protein S20 OS=H... [more]
RS20_BOVIN3.3e-3770.540S ribosomal protein S20 OS=B... [more]
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BLAST of Spo14063.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT3G47370.26.5e-5288.7Ribosomal protein S10p/S20e fa... [more]
AT3G45030.13.2e-5189.2Ribosomal protein S10p/S20e fa... [more]
AT5G62300.13.2e-5189.2Ribosomal protein S10p/S20e fa... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001848Ribosomal protein S10PRINTSPR00971RIBOSOMALS10coord: 21..34
score: 1.6E-14coord: 56..71
score: 1.6E-14coord: 78..92
score: 1.6
IPR001848Ribosomal protein S10HAMAPMF_00508Ribosomal_S10coord: 19..115
score: 15
IPR001848Ribosomal protein S10PANTHERPTHR1170030S RIBOSOMAL PROTEIN S10 FAMILY MEMBERcoord: 5..115
score: 6.1
IPR005729Ribosomal protein S10, eukaryotic/archaealTIGRFAMsTIGR01046TIGR01046coord: 20..115
score: 1.2
IPR027486Ribosomal protein S10 domainGENE3D3.30.70.600coord: 20..115
score: 5.3
IPR027486Ribosomal protein S10 domainPFAMPF00338Ribosomal_S10coord: 23..115
score: 2.2
IPR027486Ribosomal protein S10 domainSMARTSM01403Ribosomal_S10_2coord: 23..115
score: 1.7
IPR027486Ribosomal protein S10 domainunknownSSF54999Ribosomal protein S10coord: 21..115
score: 1.44
NoneNo IPR availablePANTHERPTHR11700:SF10SUBFAMILY NOT NAMEDcoord: 5..115
score: 6.1

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006260 DNA replication
biological_process GO:0006099 tricarboxylic acid cycle
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process GO:0006414 translational elongation
biological_process GO:0009553 embryo sac development
biological_process GO:0071897 DNA biosynthetic process
biological_process GO:0009165 nucleotide biosynthetic process
biological_process GO:0007062 sister chromatid cohesion
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0006103 2-oxoglutarate metabolic process
biological_process GO:0006522 alanine metabolic process
biological_process GO:0009821 alkaloid biosynthetic process
biological_process GO:0006525 arginine metabolic process
biological_process GO:0006531 aspartate metabolic process
biological_process GO:0010182 sugar mediated signaling pathway
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0006007 glucose catabolic process
biological_process GO:0006406 mRNA export from nucleus
biological_process GO:0015976 carbon utilization
biological_process GO:0051301 cell division
biological_process GO:0048825 cotyledon development
biological_process GO:0009880 embryonic pattern specification
biological_process GO:0006094 gluconeogenesis
biological_process GO:0019915 lipid storage
biological_process GO:0010072 primary shoot apical meristem specification
biological_process GO:0009845 seed germination
biological_process GO:0006468 protein phosphorylation
biological_process GO:0010564 regulation of cell cycle process
biological_process GO:0045595 regulation of cell differentiation
biological_process GO:0009909 regulation of flower development
biological_process GO:0006412 translation
biological_process GO:0010162 seed dormancy process
biological_process GO:0006534 cysteine metabolic process
biological_process GO:0006536 glutamate metabolic process
biological_process GO:0009220 pyrimidine ribonucleotide biosynthetic process
biological_process GO:0042545 cell wall modification
biological_process GO:0051788 response to misfolded protein
biological_process GO:0009266 response to temperature stimulus
biological_process GO:0009407 toxin catabolic process
biological_process GO:0006833 water transport
biological_process GO:0006397 mRNA processing
biological_process GO:0006508 proteolysis
biological_process GO:0009664 plant-type cell wall organization
biological_process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process GO:0006139 nucleobase-containing compound metabolic process
biological_process GO:0006996 organelle organization
biological_process GO:0006119 oxidative phosphorylation
biological_process GO:0006479 protein methylation
biological_process GO:0000028 ribosomal small subunit assembly
biological_process GO:0034969 histone arginine methylation
biological_process GO:0006623 protein targeting to vacuole
biological_process GO:0080129 proteasome core complex assembly
biological_process GO:0009094 L-phenylalanine biosynthetic process
biological_process GO:0016192 vesicle-mediated transport
biological_process GO:0006107 oxaloacetate metabolic process
biological_process GO:0006560 proline metabolic process
biological_process GO:0043087 regulation of GTPase activity
biological_process GO:0046686 response to cadmium ion
biological_process GO:0000162 tryptophan biosynthetic process
biological_process GO:0006571 tyrosine biosynthetic process
biological_process GO:0006529 asparagine biosynthetic process
biological_process GO:0009853 photorespiration
biological_process GO:0006541 glutamine metabolic process
biological_process GO:0006177 GMP biosynthetic process
biological_process GO:0006635 fatty acid beta-oxidation
biological_process GO:0006096 glycolytic process
biological_process GO:0007030 Golgi organization
biological_process GO:0006972 hyperosmotic response
biological_process GO:0006499 N-terminal protein myristoylation
biological_process GO:0008033 tRNA processing
biological_process GO:0050826 response to freezing
biological_process GO:0016579 protein deubiquitination
biological_process GO:0051604 protein maturation
biological_process GO:0006183 GTP biosynthetic process
biological_process GO:0001522 pseudouridine synthesis
biological_process GO:0016567 protein ubiquitination
biological_process GO:0001510 RNA methylation
biological_process GO:0000478 endonucleolytic cleavage involved in rRNA processing
biological_process GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process GO:0006606 protein import into nucleus
biological_process GO:0009409 response to cold
biological_process GO:0006364 rRNA processing
biological_process GO:0000373 Group II intron splicing
biological_process GO:0006626 protein targeting to mitochondrion
biological_process GO:0000338 protein deneddylation
biological_process GO:0006241 CTP biosynthetic process
biological_process GO:0006228 UTP biosynthetic process
biological_process GO:0009585 red, far-red light phototransduction
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006396 RNA processing
biological_process GO:0006164 purine nucleotide biosynthetic process
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0009640 photomorphogenesis
biological_process GO:0016571 histone methylation
biological_process GO:0000387 spliceosomal snRNP assembly
biological_process GO:0006821 chloride transport
biological_process GO:0006884 cell volume homeostasis
biological_process GO:0006165 nucleoside diphosphate phosphorylation
biological_process GO:0006334 nucleosome assembly
biological_process GO:0000413 protein peptidyl-prolyl isomerization
biological_process GO:0006457 protein folding
cellular_component GO:0005730 nucleolus
cellular_component GO:0000502 proteasome complex
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0031429 box H/ACA snoRNP complex
cellular_component GO:0005737 cytoplasm
cellular_component GO:0030687 preribosome, large subunit precursor
cellular_component GO:0009506 plasmodesma
cellular_component GO:0080008 Cul4-RING E3 ubiquitin ligase complex
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005759 mitochondrial matrix
cellular_component GO:0005840 ribosome
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0044424 intracellular part
cellular_component GO:0005634 nucleus
cellular_component GO:0005654 nucleoplasm
cellular_component GO:0016459 myosin complex
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005829 cytosol
cellular_component GO:0032040 small-subunit processome
cellular_component GO:0032991 protein-containing complex
cellular_component GO:0034709 methylosome
cellular_component GO:0034715 pICln-Sm protein complex
cellular_component GO:1990904 ribonucleoprotein complex
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009507 chloroplast
cellular_component GO:0016592 mediator complex
cellular_component GO:0005618 cell wall
cellular_component GO:0042575 DNA polymerase complex
cellular_component GO:0016020 membrane
molecular_function GO:0030515 snoRNA binding
molecular_function GO:0004177 aminopeptidase activity
molecular_function GO:0009982 pseudouridine synthase activity
molecular_function GO:0008237 metallopeptidase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0016779 nucleotidyltransferase activity
molecular_function GO:0042393 histone binding
molecular_function GO:0005525 GTP binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0008235 metalloexopeptidase activity
molecular_function GO:0051082 unfolded protein binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003755 peptidyl-prolyl cis-trans isomerase activity
molecular_function GO:0019843 rRNA binding
molecular_function GO:0008168 methyltransferase activity
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0004427 inorganic diphosphatase activity
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0005488 binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004550 nucleoside diphosphate kinase activity
molecular_function GO:0003887 DNA-directed DNA polymerase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0005507 copper ion binding
molecular_function GO:0005096 GTPase activator activity
molecular_function GO:0004069 L-aspartate:2-oxoglutarate aminotransferase activity
molecular_function GO:0080130 L-phenylalanine:2-oxoglutarate aminotransferase activity
molecular_function GO:0030170 pyridoxal phosphate binding
molecular_function GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0003922 GMP synthase (glutamine-hydrolyzing) activity
molecular_function GO:0016462 pyrophosphatase activity
molecular_function GO:0016740 transferase activity
molecular_function GO:0008097 5S rRNA binding
molecular_function GO:0008026 ATP-dependent helicase activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0005515 protein binding
molecular_function GO:0004612 phosphoenolpyruvate carboxykinase (ATP) activity
molecular_function GO:0016905 myosin heavy chain kinase activity
molecular_function GO:0043021 ribonucleoprotein complex binding
molecular_function GO:0008469 histone-arginine N-methyltransferase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo167491.00Barchart | Table
Spo060940.77Barchart | Table
Spo172710.76Barchart | Table
Spo036750.76Barchart | Table
Spo025340.75Barchart | Table
Spo201610.75Barchart | Table
Spo231930.74Barchart | Table
Spo005040.74Barchart | Table
Spo041170.74Barchart | Table
Spo088160.74Barchart | Table
Spo074320.74Barchart | Table
Spo123040.73Barchart | Table
Spo070750.73Barchart | Table
Spo271540.73Barchart | Table
Spo055550.73Barchart | Table
Spo134810.72Barchart | Table
Spo120450.72Barchart | Table
Spo010960.72Barchart | Table
Spo203760.72Barchart | Table
Spo197610.72Barchart | Table
Spo184340.72Barchart | Table
Spo183040.72Barchart | Table
Spo056320.72Barchart | Table
Spo258410.72Barchart | Table
Spo155830.72Barchart | Table
Spo093530.72Barchart | Table
Spo001700.72Barchart | Table
Spo128090.72Barchart | Table
Spo232200.71Barchart | Table
Spo186470.71Barchart | Table
Spo105180.71Barchart | Table
Spo225780.71Barchart | Table
Spo052750.71Barchart | Table
Spo153630.71Barchart | Table
Spo118700.70Barchart | Table
Spo074020.70Barchart | Table
Spo076680.70Barchart | Table
Spo132880.70Barchart | Table
Spo179290.70Barchart | Table
Spo194400.70Barchart | Table
Spo255100.70Barchart | Table
Spo020110.70Barchart | Table
Spo239760.70Barchart | Table
Spo011300.70Barchart | Table
Spo121930.70Barchart | Table
Spo157110.70Barchart | Table
Spo094230.70Barchart | Table
Spo128160.69Barchart | Table
Spo047550.69Barchart | Table
Spo057830.69Barchart | Table
Spo061360.69Barchart | Table
Spo084880.69Barchart | Table
Spo110720.69Barchart | Table
Spo110930.69Barchart | Table
Spo120710.69Barchart | Table
Spo123110.69Barchart | Table
Spo127590.69Barchart | Table
Spo130480.69Barchart | Table
Spo194130.69Barchart | Table
Spo207890.69Barchart | Table
Spo223940.69Barchart | Table
Spo002110.68Barchart | Table
Spo104610.68Barchart | Table
Spo228090.68Barchart | Table
Spo010010.68Barchart | Table
Spo243950.68Barchart | Table
Spo007800.68Barchart | Table
Spo160330.68Barchart | Table
Spo052100.68Barchart | Table
Spo125160.68Barchart | Table
Spo100240.68Barchart | Table
Spo183930.68Barchart | Table
Spo109810.68Barchart | Table
Spo192000.68Barchart | Table
Spo193450.68Barchart | Table
Spo266800.68Barchart | Table
Spo026990.68Barchart | Table
Spo003630.68Barchart | Table
Spo204880.68Barchart | Table
Spo148230.68Barchart | Table
Spo247030.68Barchart | Table
Spo021890.67Barchart | Table
Spo151500.67Barchart | Table
Spo065010.67Barchart | Table
Spo256690.67Barchart | Table
Spo225200.67Barchart | Table
Spo061680.67Barchart | Table
Spo031050.67Barchart | Table
Spo157510.67Barchart | Table
Spo023800.67Barchart | Table
Spo232410.67Barchart | Table
Spo266360.67Barchart | Table
Spo234980.67Barchart | Table
Spo239220.67Barchart | Table
Spo137070.67Barchart | Table
Spo192360.67Barchart | Table
Spo164600.67Barchart | Table
Spo199810.67Barchart | Table
Spo044540.67Barchart | Table
Spo174960.67Barchart | Table
Spo022180.67Barchart | Table
Spo007020.66Barchart | Table
Spo082850.66Barchart | Table
Spo071450.66Barchart | Table
Spo143230.66Barchart | Table
Spo061720.66Barchart | Table
Spo037010.66Barchart | Table
Spo192070.66Barchart | Table
Spo198330.66Barchart | Table
Spo205190.66Barchart | Table
Spo217190.66Barchart | Table
Spo223100.66Barchart | Table
Spo272230.66Barchart | Table
Spo021810.66Barchart | Table
Spo010920.66Barchart | Table
Spo264880.66Barchart | Table
Spo119430.66Barchart | Table
Spo262490.66Barchart | Table
Spo123910.66Barchart | Table
Spo196500.65Barchart | Table
Spo125980.65Barchart | Table
Spo030590.65Barchart | Table
Spo234280.65Barchart | Table
Spo209970.65Barchart | Table
Spo039640.65Barchart | Table
Spo204600.65Barchart | Table