Spo14071 (gene) | SpinachBase

Overview


Name	Spo14071
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	SAUR-like auxin-responsive protein family
Location	chr4 : 80872732 .. 80873013 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTATCCGGTTCCCTTTTATGCTATCTAGTGCAAAGCAAATTCTTAGAAGAAATCAAAACGTAGCAGCAGTACCAAAAGGTCATATCCCAGTATATGTAGGTGATCAGGCTAATAAGAAAAGACATGTGGTACCACTTTCATACTTAAGCCACCCTGCATTTCAGTGCATGCTACACCGTGCTGAACAAGAGTTTGGTTTCAGTCATCTTATGGGAGGTCTGACGATTCCATGCTCTGAAGAAACATTTTTTGAACTAACTTCTGAACTCAAGTGCTAG

mRNA sequence

ATGGCTATCCGGTTCCCTTTTATGCTATCTAGTGCAAAGCAAATTCTTAGAAGAAATCAAAACGTAGCAGCAGTACCAAAAGGTCATATCCCAGTATATGTAGGTGATCAGGCTAATAAGAAAAGACATGTGGTACCACTTTCATACTTAAGCCACCCTGCATTTCAGTGCATGCTACACCGTGCTGAACAAGAGTTTGGTTTCAGTCATCTTATGGGAGGTCTGACGATTCCATGCTCTGAAGAAACATTTTTTGAACTAACTTCTGAACTCAAGTGCTAG

Coding sequence (CDS)

ATGGCTATCCGGTTCCCTTTTATGCTATCTAGTGCAAAGCAAATTCTTAGAAGAAATCAAAACGTAGCAGCAGTACCAAAAGGTCATATCCCAGTATATGTAGGTGATCAGGCTAATAAGAAAAGACATGTGGTACCACTTTCATACTTAAGCCACCCTGCATTTCAGTGCATGCTACACCGTGCTGAACAAGAGTTTGGTTTCAGTCATCTTATGGGAGGTCTGACGATTCCATGCTCTGAAGAAACATTTTTTGAACTAACTTCTGAACTCAAGTGCTAG

Protein sequence

MAIRFPFMLSSAKQILRRNQNVAAVPKGHIPVYVGDQANKKRHVVPLSYLSHPAFQCMLHRAEQEFGFSHLMGGLTIPCSEETFFELTSELKC

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo14071.1	Spo14071.1	mRNA

Homology

[Close]

BLAST of Spo14071.1 vs. NCBI nr
Match: gi|902225502|gb|KNA20089.1| (hypothetical protein SOVF_055590 [Spinacia oleracea])

HSP 1 Score: 148.3 bits (373), Expect = 6.700e-33
Identity = 73/93 (78.49%), Postives = 80/93 (86.02%), Query Frame = 1

		  
Query: 1  MAIRFPFMLSSAKQILRRNQNVAAVPKGHIPVYVGDQANKKRHVVPLSYLSHPAFQCMLH 60
          MAIRFP MLS AKQIL RNQ V  VPKGH+PVYVG+QA+KKR+VVPLSYLSHP FQ +L 
Sbjct: 1  MAIRFPSMLSHAKQILARNQQV--VPKGHVPVYVGEQADKKRYVVPLSYLSHPTFQYLLQ 60

Query: 61 RAEQEFGFSHLMGGLTIPCSEETFFELTSELKC 94
          RAE+EFGF H MG LTIPCS ETFF+LTSELKC
Sbjct: 61 RAEEEFGFDHPMGCLTIPCSTETFFKLTSELKC 91

[Close]

BLAST of Spo14071.1 vs. NCBI nr
Match: gi|731360102|ref|XP_010691635.1| (PREDICTED: auxin-induced protein 15A-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 146.7 bits (369), Expect = 2.000e-32
Identity = 72/93 (77.42%), Postives = 81/93 (87.10%), Query Frame = 1

		  
Query: 1  MAIRFPFMLSSAKQILRRNQNVAAVPKGHIPVYVGDQANKKRHVVPLSYLSHPAFQCMLH 60
          MAIRFP ++SS KQI  +NQ  AAVPKG +PVYVGD A+KKR+VVPLSYLSHPAFQ +L 
Sbjct: 1  MAIRFPSVVSSVKQIRAKNQQ-AAVPKGCVPVYVGDHADKKRYVVPLSYLSHPAFQDLLQ 60

Query: 61 RAEQEFGFSHLMGGLTIPCSEETFFELTSELKC 94
          RAE+EFGF+H MGGLTIPCSEETF ELTSELKC
Sbjct: 61 RAEEEFGFNHPMGGLTIPCSEETFMELTSELKC 92

[Close]

BLAST of Spo14071.1 vs. NCBI nr
Match: gi|731360098|ref|XP_010691632.1| (PREDICTED: auxin-induced protein 15A-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 146.0 bits (367), Expect = 3.300e-32
Identity = 69/93 (74.19%), Postives = 81/93 (87.10%), Query Frame = 1

		  
Query: 1  MAIRFPFMLSSAKQILRRNQNVAAVPKGHIPVYVGDQANKKRHVVPLSYLSHPAFQCMLH 60
          MAIRFP +LS+AKQIL +NQ V  VPKGH+PVYVG+QA+KKRH+VPLSYLSHP FQ +L 
Sbjct: 1  MAIRFPSVLSNAKQILTKNQQV--VPKGHVPVYVGEQADKKRHLVPLSYLSHPVFQDLLQ 60

Query: 61 RAEQEFGFSHLMGGLTIPCSEETFFELTSELKC 94
          RAE+EFGF+H MG LTIPC+EE FF LTSEL+C
Sbjct: 61 RAEEEFGFNHPMGALTIPCTEEMFFNLTSELRC 91

[Close]

BLAST of Spo14071.1 vs. NCBI nr
Match: gi|870848795|gb|KMT01084.1| (hypothetical protein BVRB_9g223390 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 144.4 bits (363), Expect = 9.700e-32
Identity = 69/93 (74.19%), Postives = 81/93 (87.10%), Query Frame = 1

		  
Query: 1  MAIRFPFMLSSAKQILRRNQNVAAVPKGHIPVYVGDQANKKRHVVPLSYLSHPAFQCMLH 60
          MAIRFP +LS+AKQIL +NQ V  VPKGHIPVYVG+QA+KKR+VVPLSYLSHP FQ +L 
Sbjct: 1  MAIRFPSVLSTAKQILTKNQQV--VPKGHIPVYVGEQASKKRYVVPLSYLSHPVFQDLLQ 60

Query: 61 RAEQEFGFSHLMGGLTIPCSEETFFELTSELKC 94
          RAE+EFGF+H MG LTIPC+EE FF LTSE++C
Sbjct: 61 RAEEEFGFNHPMGALTIPCTEELFFNLTSEIRC 91

[Close]

BLAST of Spo14071.1 vs. NCBI nr
Match: gi|731360100|ref|XP_010691633.1| (PREDICTED: auxin-induced protein 15A-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 144.1 bits (362), Expect = 1.300e-31
Identity = 69/93 (74.19%), Postives = 80/93 (86.02%), Query Frame = 1

		  
Query: 1  MAIRFPFMLSSAKQILRRNQNVAAVPKGHIPVYVGDQANKKRHVVPLSYLSHPAFQCMLH 60
          MAIRFP +LS+AKQIL +NQ V  VPK H+PVYVG+QA+KKRHVVPLSYLSHP FQ +L 
Sbjct: 1  MAIRFPSVLSTAKQILTKNQQV--VPKRHVPVYVGEQADKKRHVVPLSYLSHPVFQDLLQ 60

Query: 61 RAEQEFGFSHLMGGLTIPCSEETFFELTSELKC 94
          RAE+EFGF+H MG LTIPC+EE FF LTSEL+C
Sbjct: 61 RAEEEFGFNHPMGALTIPCTEEMFFNLTSELRC 91

[Close]

BLAST of Spo14071.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RMC7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_055590 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 4.700e-33
Identity = 73/93 (78.49%), Postives = 80/93 (86.02%), Query Frame = 1

		  
Query: 1  MAIRFPFMLSSAKQILRRNQNVAAVPKGHIPVYVGDQANKKRHVVPLSYLSHPAFQCMLH 60
          MAIRFP MLS AKQIL RNQ V  VPKGH+PVYVG+QA+KKR+VVPLSYLSHP FQ +L 
Sbjct: 1  MAIRFPSMLSHAKQILARNQQV--VPKGHVPVYVGEQADKKRYVVPLSYLSHPTFQYLLQ 60

Query: 61 RAEQEFGFSHLMGGLTIPCSEETFFELTSELKC 94
          RAE+EFGF H MG LTIPCS ETFF+LTSELKC
Sbjct: 61 RAEEEFGFDHPMGCLTIPCSTETFFKLTSELKC 91

[Close]

BLAST of Spo14071.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BM81_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g223490 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.400e-32
Identity = 72/93 (77.42%), Postives = 81/93 (87.10%), Query Frame = 1

		  
Query: 1  MAIRFPFMLSSAKQILRRNQNVAAVPKGHIPVYVGDQANKKRHVVPLSYLSHPAFQCMLH 60
          MAIRFP ++SS KQI  +NQ  AAVPKG +PVYVGD A+KKR+VVPLSYLSHPAFQ +L 
Sbjct: 1  MAIRFPSVVSSVKQIRAKNQQ-AAVPKGCVPVYVGDHADKKRYVVPLSYLSHPAFQDLLQ 60

Query: 61 RAEQEFGFSHLMGGLTIPCSEETFFELTSELKC 94
          RAE+EFGF+H MGGLTIPCSEETF ELTSELKC
Sbjct: 61 RAEEEFGFNHPMGGLTIPCSEETFMELTSELKC 92

[Close]

BLAST of Spo14071.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BM03_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g223430 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 2.300e-32
Identity = 69/93 (74.19%), Postives = 81/93 (87.10%), Query Frame = 1

		  
Query: 1  MAIRFPFMLSSAKQILRRNQNVAAVPKGHIPVYVGDQANKKRHVVPLSYLSHPAFQCMLH 60
          MAIRFP +LS+AKQIL +NQ V  VPKGH+PVYVG+QA+KKRH+VPLSYLSHP FQ +L 
Sbjct: 1  MAIRFPSVLSNAKQILTKNQQV--VPKGHVPVYVGEQADKKRHLVPLSYLSHPVFQDLLQ 60

Query: 61 RAEQEFGFSHLMGGLTIPCSEETFFELTSELKC 94
          RAE+EFGF+H MG LTIPC+EE FF LTSEL+C
Sbjct: 61 RAEEEFGFNHPMGALTIPCTEEMFFNLTSELRC 91

[Close]

BLAST of Spo14071.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BM70_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g223390 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 6.800e-32
Identity = 69/93 (74.19%), Postives = 81/93 (87.10%), Query Frame = 1

		  
Query: 1  MAIRFPFMLSSAKQILRRNQNVAAVPKGHIPVYVGDQANKKRHVVPLSYLSHPAFQCMLH 60
          MAIRFP +LS+AKQIL +NQ V  VPKGHIPVYVG+QA+KKR+VVPLSYLSHP FQ +L 
Sbjct: 1  MAIRFPSVLSTAKQILTKNQQV--VPKGHIPVYVGEQASKKRYVVPLSYLSHPVFQDLLQ 60

Query: 61 RAEQEFGFSHLMGGLTIPCSEETFFELTSELKC 94
          RAE+EFGF+H MG LTIPC+EE FF LTSE++C
Sbjct: 61 RAEEEFGFNHPMGALTIPCTEELFFNLTSEIRC 91

[Close]

BLAST of Spo14071.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EDP6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g223460 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 8.800e-32
Identity = 69/93 (74.19%), Postives = 80/93 (86.02%), Query Frame = 1

		  
Query: 1  MAIRFPFMLSSAKQILRRNQNVAAVPKGHIPVYVGDQANKKRHVVPLSYLSHPAFQCMLH 60
          MAIRFP +LS+AKQIL +NQ V  VPK H+PVYVG+QA+KKRHVVPLSYLSHP FQ +L 
Sbjct: 1  MAIRFPSVLSTAKQILTKNQQV--VPKRHVPVYVGEQADKKRHVVPLSYLSHPVFQDLLQ 60

Query: 61 RAEQEFGFSHLMGGLTIPCSEETFFELTSELKC 94
          RAE+EFGF+H MG LTIPC+EE FF LTSEL+C
Sbjct: 61 RAEEEFGFNHPMGALTIPCTEEMFFNLTSELRC 91

[Close]

BLAST of Spo14071.1 vs. ExPASy Swiss-Prot
Match: SAU21_ARATH (Auxin-responsive protein SAUR21 OS=Arabidopsis thaliana GN=SAUR21 PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.900e-20
Identity = 48/84 (57.14%), Postives = 64/84 (76.19%), Query Frame = 1

		  
Query: 9  LSSAKQILRRNQNVAAVPKGHIPVYVGDQANKKRHVVPLSYLSHPAFQCMLHRAEQEFGF 68
          L  AK+IL R+   +A PKG + VYVG+ + KKR++VPLSYLS P+FQ +L ++E+EFGF
Sbjct: 7  LLGAKKILSRS-TASAAPKGFLAVYVGE-SQKKRYLVPLSYLSQPSFQALLSKSEEEFGF 66

Query: 69 SHLMGGLTIPCSEETFFELTSELK 93
           H MGGLTIPC E+TF  +TS L+
Sbjct: 67 DHPMGGLTIPCPEDTFINVTSRLQ 88

[Close]

BLAST of Spo14071.1 vs. ExPASy Swiss-Prot
Match: SAU19_ARATH (Auxin-responsive protein SAUR19 OS=Arabidopsis thaliana GN=SAUR19 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 5.000e-20
Identity = 48/85 (56.47%), Postives = 65/85 (76.47%), Query Frame = 1

		  
Query: 9  LSSAKQILRRNQNV-AAVPKGHIPVYVGDQANKKRHVVPLSYLSHPAFQCMLHRAEQEFG 68
          L  AK+IL R+    +A PKG + VYVG+ + KKR++VPLSYLS P+FQ +L ++E+EFG
Sbjct: 7  LLGAKKILSRSTAAGSAAPKGFLAVYVGE-SQKKRYLVPLSYLSQPSFQALLSKSEEEFG 66

Query: 69 FSHLMGGLTIPCSEETFFELTSELK 93
          F+H MGGLTIPC E+TF  +TS L+
Sbjct: 67 FAHPMGGLTIPCPEDTFINVTSRLQ 90

[Close]

BLAST of Spo14071.1 vs. ExPASy Swiss-Prot
Match: SAU22_ARATH (Auxin-responsive protein SAUR22 OS=Arabidopsis thaliana GN=SAUR22 PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 8.500e-20
Identity = 48/85 (56.47%), Postives = 64/85 (75.29%), Query Frame = 1

		  
Query: 9  LSSAKQILRRNQN-VAAVPKGHIPVYVGDQANKKRHVVPLSYLSHPAFQCMLHRAEQEFG 68
          L  AK+IL R+   V+A PKG + VYVG+ + KKR++VPLSYL+ P+FQ +L ++E EFG
Sbjct: 7  LLGAKKILSRSTAAVSAAPKGFLAVYVGE-SQKKRYLVPLSYLNQPSFQALLSKSEDEFG 66

Query: 69 FSHLMGGLTIPCSEETFFELTSELK 93
          F H MGGLTIPC E+TF  +TS L+
Sbjct: 67 FDHPMGGLTIPCHEDTFINVTSRLQ 90

[Close]

BLAST of Spo14071.1 vs. ExPASy Swiss-Prot
Match: SAU20_ARATH (Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana GN=SAUR20 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.900e-19
Identity = 46/85 (54.12%), Postives = 63/85 (74.12%), Query Frame = 1

		  
Query: 9  LSSAKQILRRNQNVA-AVPKGHIPVYVGDQANKKRHVVPLSYLSHPAFQCMLHRAEQEFG 68
          L  AK+IL R+   A A PKG + VYVG+ + KKR++VP+SYL+ P+FQ +L ++E+EFG
Sbjct: 7  LLGAKKILSRSTTAASAAPKGFLAVYVGE-SQKKRYLVPISYLNQPSFQALLSKSEEEFG 66

Query: 69 FSHLMGGLTIPCSEETFFELTSELK 93
          F H MGGLTIPC E+TF  +TS  +
Sbjct: 67 FDHPMGGLTIPCPEDTFINVTSRFQ 90

[Close]

BLAST of Spo14071.1 vs. ExPASy Swiss-Prot
Match: SAU24_ARATH (Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana GN=SAUR24 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.900e-19
Identity = 46/85 (54.12%), Postives = 64/85 (75.29%), Query Frame = 1

		  
Query: 9  LSSAKQILRRNQNV-AAVPKGHIPVYVGDQANKKRHVVPLSYLSHPAFQCMLHRAEQEFG 68
          L  AK+IL R+    +A PKG + VYVG+ + KKR++VP+SYL+ P+FQ +L ++E+EFG
Sbjct: 7  LLGAKKILSRSTGAGSAAPKGFLAVYVGE-SQKKRYLVPVSYLNQPSFQALLSKSEEEFG 66

Query: 69 FSHLMGGLTIPCSEETFFELTSELK 93
          F H MGGLTIPC E+TF  +TS L+
Sbjct: 67 FDHPMGGLTIPCPEDTFINVTSRLQ 90

[Close]

BLAST of Spo14071.1 vs. TAIR (Arabidopsis)
Match: AT2G21210.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 111.3 bits (277), Expect = 3.200e-25
Identity = 52/94 (55.32%), Postives = 69/94 (73.40%), Query Frame = 1

		  
Query: 1  MAIRFPFMLSSAKQILR---RNQNVAAVPKGHIPVYVGDQANKKRHVVPLSYLSHPAFQC 60
          MAIR   +L S+KQ+L+    + N  A+PKGH+ VYVG+   K+R VVP++YLSHP FQ 
Sbjct: 1  MAIRISRVLQSSKQLLKSLSHSSNNVAIPKGHLAVYVGEMMQKRRFVVPVTYLSHPCFQK 60

Query: 61 MLHRAEQEFGFSHLMGGLTIPCSEETFFELTSEL 92
          +L +AE+EFGF H MGGLTIPC+E+ F +L S L
Sbjct: 61 LLRKAEEEFGFDHPMGGLTIPCTEQIFIDLASRL 94

[Close]

BLAST of Spo14071.1 vs. TAIR (Arabidopsis)
Match: AT4G38840.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 105.9 bits (263), Expect = 1.300e-23
Identity = 55/97 (56.70%), Postives = 71/97 (73.20%), Query Frame = 1

		  
Query: 1  MAIRFPFMLSSAKQILRRNQNVAA--------VPKGHIPVYVGDQANKKRHVVPLSYLSH 60
          MAIR P +L S+KQILR+ + +++        VPKG++ VYVG+Q N KR VVP+SYL  
Sbjct: 1  MAIRIPRVLQSSKQILRQAKLLSSSSSSSSLDVPKGYLAVYVGEQ-NMKRFVVPVSYLDQ 60

Query: 61 PAFQCMLHRAEQEFGFSHLMGGLTIPCSEETFFELTS 90
          P+FQ +L +AE+EFGF H MGGLTIPCSEE F +L S
Sbjct: 61 PSFQDLLRKAEEEFGFDHPMGGLTIPCSEEIFIDLAS 96

[Close]

BLAST of Spo14071.1 vs. TAIR (Arabidopsis)
Match: AT5G18030.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 99.0 bits (245), Expect = 1.600e-21
Identity = 48/84 (57.14%), Postives = 64/84 (76.19%), Query Frame = 1

		  
Query: 9  LSSAKQILRRNQNVAAVPKGHIPVYVGDQANKKRHVVPLSYLSHPAFQCMLHRAEQEFGF 68
          L  AK+IL R+   +A PKG + VYVG+ + KKR++VPLSYLS P+FQ +L ++E+EFGF
Sbjct: 7  LLGAKKILSRS-TASAAPKGFLAVYVGE-SQKKRYLVPLSYLSQPSFQALLSKSEEEFGF 66

Query: 69 SHLMGGLTIPCSEETFFELTSELK 93
           H MGGLTIPC E+TF  +TS L+
Sbjct: 67 DHPMGGLTIPCPEDTFINVTSRLQ 88

[Close]

BLAST of Spo14071.1 vs. TAIR (Arabidopsis)
Match: AT4G34800.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 98.6 bits (244), Expect = 2.200e-21
Identity = 49/94 (52.13%), Postives = 69/94 (73.40%), Query Frame = 1

		  
Query: 1  MAIRFPFMLSSAKQILRRNQNVAAVPKGHIPVYVGDQA-NKKRHVVPLSYLSHPAFQCML 60
          MAIR   +++S +   ++++    VPKGH+ VYVG++  +KKR VVP+SYL+HP+FQ +L
Sbjct: 1  MAIRLSRVINSKQSQKQQSR----VPKGHVAVYVGEEMESKKRFVVPISYLNHPSFQGLL 60

Query: 61 HRAEQEFGFSHLMGGLTIPCSEETFFELTSELKC 94
           RAE+EFGF+H +GGLTIPC EETF  L +   C
Sbjct: 61 SRAEEEFGFNHPIGGLTIPCREETFVGLLNSYGC 90

[Close]

BLAST of Spo14071.1 vs. TAIR (Arabidopsis)
Match: AT5G18010.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 98.2 bits (243), Expect = 2.800e-21
Identity = 48/85 (56.47%), Postives = 65/85 (76.47%), Query Frame = 1

		  
Query: 9  LSSAKQILRRNQNV-AAVPKGHIPVYVGDQANKKRHVVPLSYLSHPAFQCMLHRAEQEFG 68
          L  AK+IL R+    +A PKG + VYVG+ + KKR++VPLSYLS P+FQ +L ++E+EFG
Sbjct: 7  LLGAKKILSRSTAAGSAAPKGFLAVYVGE-SQKKRYLVPLSYLSQPSFQALLSKSEEEFG 66

Query: 69 FSHLMGGLTIPCSEETFFELTSELK 93
          F+H MGGLTIPC E+TF  +TS L+
Sbjct: 67 FAHPMGGLTIPCPEDTFINVTSRLQ 90

The following BLAST results are available for this feature:

BLAST of Spo14071.1 vs. NCBI nr
BLAST of Spo14071.1 vs. UniProtKB/TrEMBL
BLAST of Spo14071.1 vs. ExPASy Swiss-Prot
BLAST of Spo14071.1 vs. TAIR (Arabidopsis)

BLAST of Spo14071.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902225502\|gb\|KNA20089.1\|	6.7e-33	78.4	hypothetical protein SOVF_0555...	[more]
gi\|731360102\|ref\|XP_010691635.1\|	2.0e-32	77.4	PREDICTED: auxin-induced prote...	[more]
gi\|731360098\|ref\|XP_010691632.1\|	3.3e-32	74.1	PREDICTED: auxin-induced prote...	[more]
gi\|870848795\|gb\|KMT01084.1\|	9.7e-32	74.1	hypothetical protein BVRB_9g22...	[more]
gi\|731360100\|ref\|XP_010691633.1\|	1.3e-31	74.1	PREDICTED: auxin-induced prote...	[more]

BLAST of Spo14071.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9RMC7_SPIOL	4.7e-33	78.4	Uncharacterized protein OS=Spi...	[more]
A0A0J8BM81_BETVU	1.4e-32	77.4	Uncharacterized protein OS=Bet...	[more]
A0A0J8BM03_BETVU	2.3e-32	74.1	Uncharacterized protein OS=Bet...	[more]
A0A0J8BM70_BETVU	6.8e-32	74.1	Uncharacterized protein OS=Bet...	[more]
A0A0J8EDP6_BETVU	8.8e-32	74.1	Uncharacterized protein OS=Bet...	[more]

BLAST of Spo14071.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
SAU21_ARATH	2.9e-20	57.1	Auxin-responsive protein SAUR2...	[more]
SAU19_ARATH	5.0e-20	56.4	Auxin-responsive protein SAUR1...	[more]
SAU22_ARATH	8.5e-20	56.4	Auxin-responsive protein SAUR2...	[more]
SAU20_ARATH	1.9e-19	54.1	Auxin-responsive protein SAUR2...	[more]
SAU24_ARATH	1.9e-19	54.1	Auxin-responsive protein SAUR2...	[more]

BLAST of Spo14071.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
AT2G21210.1	3.2e-25	55.3	SAUR-like auxin-responsive pro...	[more]
AT4G38840.1	1.3e-23	56.7	SAUR-like auxin-responsive pro...	[more]
AT5G18030.1	1.6e-21	57.1	SAUR-like auxin-responsive pro...	[more]
AT4G34800.1	2.2e-21	52.1	SAUR-like auxin-responsive pro...	[more]
AT5G18010.1	2.8e-21	56.4	SAUR-like auxin-responsive pro...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003676	Small auxin-up RNA	PFAM	PF02519	Auxin_inducible	coord: 20..88 score: 3.2
None	No IPR available	PANTHER	PTHR31929	FAMILY NOT NAMED	coord: 2..93 score: 7.5
None	No IPR available	PANTHER	PTHR31929:SF3	SUBFAMILY NOT NAMED	coord: 2..93 score: 7.5

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0009733	response to auxin
biological_process	GO:0010200	response to chitin
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000785	chromatin
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo14074	0.73	Barchart \| Table
Spo02371	0.70	Barchart \| Table
Spo03184	0.69	Barchart \| Table
Spo26013	0.69	Barchart \| Table
Spo27165	0.69	Barchart \| Table
Spo11767	0.68	Barchart \| Table
Spo00782	0.68	Barchart \| Table
Spo01514	0.68	Barchart \| Table
Spo00748	0.68	Barchart \| Table
Spo27031	0.68	Barchart \| Table
Spo14294	0.67	Barchart \| Table
Spo23852	0.67	Barchart \| Table
Spo14073	0.67	Barchart \| Table
Spo07515	0.66	Barchart \| Table
Spo01925	0.66	Barchart \| Table
Spo07077	0.65	Barchart \| Table