Spo14153 (gene)

Overview
NameSpo14153
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionSmall ubiquitin-related modifier (SUMO)
Locationchr4 : 93837079 .. 93839798 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATATTTTGAAGCGAGAAATGAATAAATAAATAGAGGCTGAAAATTGAAAAAAAAGGAAGAAAGCTGTGCATTGAGAGAGCGAGTGTTTGTTCCTGTTGGCGTGAAAAGGAAGCTGTGCGCAGTCGTAGTGAGAGAAAATGTCAGGAACTCAAGAGGAAGACAAGAAGCCAGGTGGTGACCAAGCTGCTCACATCAATCTTAAAGTCAAGGGTCAGGTAATTTTGATTTTAGATTTTATTTTTGAGTTAGGGTTTATTTTTCTGTGATTTTTGTGCATACTATTCAATTTCCATCCCCCTATTTCCCTCTTTTTTTTCTCGCATAATTCGAGGGTTGTTACTGCTTGTTATAGTTTGATTTTTGTTTCTAATTATTTTTATCGTTTGTTTTGATTTTGCTTAGTTTTGCTTAATTTTTTATGCTCGTGAATCGCGTTATTTGAATAATACATGATTTAGGGTTTTGAGTGTGTTGTGTTGGTTTTAGGCAGTTGCTTAAATTGATCTGCTCATGGCGAGTTATTTCAAATAAGTTGAAAAAGTAGAACAAACAAATACAACTTGTTTTTATAAATTATAAGAAATTAATTTATTTTGTTTGGTTGTAATGGAACATTATTGGTTTCTGCTTGAATTGCAGGACGTTTTGGGGGTGAATTGCTGATTTGAGTGTAAATATTTAAGGAATTTTCGTATGCTAGGGTAAATGGATGTTTATAAGTGTGCGATAGAGGCAACTTATGATGGTGAGGATTTTGATTGTCTTTATTGAAACACTGAGTTACTTCAGAAAGAGTTATGATTGATGAAATGTGAGGATTTTTGCGTATTCTTTGGTTGTAGGTGTATTATTCACGGAATTTTGATGTGATTGTGAAAATTTGGATGAAGTTGCTCTGTGTTTTGTTTATTACACATGATTGTAGGATACTAATTGATGTAGTAAAATGTTTCTAGTTATTTACTGGGAGAATTTATTAGTATGCTATTAGAATTTTAAAACCCGAGGATTAAAAAGGGAGTGATTGTATTACACCGCTAATTTATTATGAGTGGTTGATATGTAAGACTACTGATACACAGTGTTTACAATGTAATTACCAATAAGTTGTCCACGAACGTAAGCCATCAATCATCCTACTTTCCCATTGTGCACTATAGCAAATTAGCTTTTATTTTCTCTATAGTTCAATAAATTATCTTCTGTCAATGTAATTAGGCGAGGTAAGTATCTCATTGTTTGATTTATTCAATTTGGTATCTTCTTTGGCTTTATAAGTTTATGCGTTTTCCAGTTTCAAAATAAATGTCTGCTTTATGCGAGTGCTAGATTATGAGATGCCCATTATTGGAAGCAAGGTCGGGTATGCTGCTGGATTTAGCAAGTCACATATGTTGTGATAGTATGACACAAGCTGCCCCCCTGCCCCAATTGGGACAACTGAAATGTGCTTGAATGGGTGTTGGGCTATGTTCTTTTCAGAGTTCAACCCTCGTTATTTGGACTTTATTCGAACTTTTTGGGTCCTTGTTTGATGAACTTAGTCGTGAAATGAACTTTGTTGCCCTTGTCTAAATTTATGTCAACTTATCAAAACCCCAAAATGTATTTAGACTTATTTTCCCTAGAACTTTAATTTTAAGGTGAGAAAAACAAGGCCCTTAAAGCTGTGTTGGTGTGAAATCATACCATGTGTGTGTTTGTGGTGACTTTCCCCTCTTTTCTCTTGCCACACGGTTTGGTTGAAGTGTCAAGTTCAATATGTCCTGTATTCCTAGCCATGGTTTCTGATTTAGTGCTTGGATTGATATTTATCAGAAACTAAGCTTGCACTTCCCTCGAATTAAAAAAAGCTTACTGCACTTGAATGTTTTTTTATCTGTTTTGGGTATGTGCATCAGGAATGCTTCAGTTCTTAATGTGTTTTTGTTTGGGGTGTGTTTTTAGGATGGCAATGAAGTCTTCTTCCGTATTAAGAGGTCTACACAACTGAAGAAGCTTATGAATGCTTATTGTGACCGACAGTCAGTGGAATTGAACTCTATCGCTTTCTTGTTTGATGGACGTCGACTTCGAGCCGAGCAGACTCCTGACGAGGTTCTTTCTTCTTCATTCCTCTTTCTTTTTCTGTATCACATACCTTGGGTTGATTGTCTATGCGAAATTTTCACATCTTCTAGGCCTTAGTCCGAACAGTAGGATTATCTCCAGATATCTTTCTTTGCTCGCTTTCCTCTATTAATAGTTTCTCTTATTGAATGTCTTGCAACAGTTGGAAATGGAGGATGGTGATGAGATAGACGCTATGCTTCATCAGACTGGAGGTGCTATGATCTAGTTTTTGTTGTTGTGTGCTTGTGTCTCAGGCTTACTAGGATGAAAATTTTAGGTTATTTCTGCGATTGGCTTTCTGAAAAAGACCATGTCTAAAACTTTATTGTAACTTGGATCCAGTCTATTTTGAAACCTAGTTGCTCCGTCTGAGCTCTGTTTGTCTGCGTGACTTGATGCTTAGTATGTCATTACCTGTTTGGGCTGTCGTCCCAAATCACAACTTATTAGTATCTCAACTTGTCGTACTTGGAAACCATTTTGTATATTCTTATTATCTTGTGGCTTTGGAACCAATGTTATTCTTTGTTGCCTGATGAAGTATCCAGGGTTGTTATAGACGCTCTCATAGTTTGATTTCGATTATAATTTATCTCGATCTAACCCCA

mRNA sequence

ATATTTTGAAGCGAGAAATGAATAAATAAATAGAGGCTGAAAATTGAAAAAAAAGGAAGAAAGCTGTGCATTGAGAGAGCGAGTGTTTGTTCCTGTTGGCGTGAAAAGGAAGCTGTGCGCAGTCGTAGTGAGAGAAAATGTCAGGAACTCAAGAGGAAGACAAGAAGCCAGGTGGTGACCAAGCTGCTCACATCAATCTTAAAGTCAAGGGTCAGGATGGCAATGAAGTCTTCTTCCGTATTAAGAGGTCTACACAACTGAAGAAGCTTATGAATGCTTATTGTGACCGACAGTCAGTGGAATTGAACTCTATCGCTTTCTTGTTTGATGGACGTCGACTTCGAGCCGAGCAGACTCCTGACGAGTTGGAAATGGAGGATGGTGATGAGATAGACGCTATGCTTCATCAGACTGGAGGTGCTATGATCTAGTTTTTGTTGTTGTGTGCTTGTGTCTCAGGCTTACTAGGATGAAAATTTTAGGTTATTTCTGCGATTGGCTTTCTGAAAAAGACCATGTCTAAAACTTTATTGTAACTTGGATCCAGTCTATTTTGAAACCTAGTTGCTCCGTCTGAGCTCTGTTTGTCTGCGTGACTTGATGCTTAGTATGTCATTACCTGTTTGGGCTGTCGTCCCAAATCACAACTTATTAGTATCTCAACTTGTCGTACTTGGAAACCATTTTGTATATTCTTATTATCTTGTGGCTTTGGAACCAATGTTATTCTTTGTTGCCTGATGAAGTATCCAGGGTTGTTATAGACGCTCTCATAGTTTGATTTCGATTATAATTTATCTCGATCTAACCCCA

Coding sequence (CDS)

ATGTCAGGAACTCAAGAGGAAGACAAGAAGCCAGGTGGTGACCAAGCTGCTCACATCAATCTTAAAGTCAAGGGTCAGGATGGCAATGAAGTCTTCTTCCGTATTAAGAGGTCTACACAACTGAAGAAGCTTATGAATGCTTATTGTGACCGACAGTCAGTGGAATTGAACTCTATCGCTTTCTTGTTTGATGGACGTCGACTTCGAGCCGAGCAGACTCCTGACGAGTTGGAAATGGAGGATGGTGATGAGATAGACGCTATGCTTCATCAGACTGGAGGTGCTATGATCTAG

Protein sequence

MSGTQEEDKKPGGDQAAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGAMI
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo14153.1Spo14153.1mRNA


Homology
[Close]
BLAST of Spo14153.1 vs. NCBI nr
Match: gi|902141134|gb|KNA04684.1| (hypothetical protein SOVF_197390 [Spinacia oleracea])

HSP 1 Score: 196.1 bits (497), Expect = 2.900e-47
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 

		  

Query: 1  MSGTQEEDKKPGGDQAAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIA 60
          MSGTQEEDKKPGGDQAAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIA
Sbjct: 1  MSGTQEEDKKPGGDQAAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIA 60

Query: 61 FLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGAMI 98
          FLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGAMI
Sbjct: 61 FLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGAMI 97
[Close]
BLAST of Spo14153.1 vs. NCBI nr
Match: gi|731329735|ref|XP_010675753.1| (PREDICTED: small ubiquitin-related modifier 1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 185.3 bits (469), Expect = 5.200e-44
Identity = 92/97 (94.85%), Postives = 96/97 (98.97%), Query Frame = 1 

		  

Query: 1  MSGTQEEDKKPGGDQAAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIA 60
          MSGTQEEDKKPG DQ+AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIA
Sbjct: 1  MSGTQEEDKKPG-DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIA 60

Query: 61 FLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGAMI 98
          FLFDGRRLRAEQTP+ELEMEDGDEIDAMLHQTGG+M+
Sbjct: 61 FLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGSMV 96
[Close]
BLAST of Spo14153.1 vs. NCBI nr
Match: gi|590711666|ref|XP_007049172.1| (Small ubiquitin-like modifier 1, 1,SUMO1,ATSUMO1, partial [Theobroma cacao])

HSP 1 Score: 180.3 bits (456), Expect = 1.700e-42
Identity = 89/94 (94.68%), Postives = 89/94 (94.68%), Query Frame = 1 

		  

Query: 1   MSGTQEEDKKPGGDQAAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIA 60
           MSG QEEDKKPG   AAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIA
Sbjct: 30  MSGQQEEDKKPGDQSAAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIA 89

Query: 61  FLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGG 95
           FLFDGRRLR EQTPDELEMEDGDEIDAMLHQTGG
Sbjct: 90  FLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 123
[Close]
BLAST of Spo14153.1 vs. NCBI nr
Match: gi|697104563|ref|XP_009606082.1| (PREDICTED: small ubiquitin-related modifier 2 [Nicotiana tomentosiformis])

HSP 1 Score: 179.1 bits (453), Expect = 3.700e-42
Identity = 89/97 (91.75%), Postives = 92/97 (94.85%), Query Frame = 1 

		  

Query: 1  MSGTQEEDKKPGGDQAAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIA 60
          MSG  EEDKKP GDQAAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV+ NSIA
Sbjct: 1  MSGA-EEDKKPAGDQAAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDFNSIA 60

Query: 61 FLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGAMI 98
          FLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGG ++
Sbjct: 61 FLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGTIL 96
[Close]
BLAST of Spo14153.1 vs. NCBI nr
Match: gi|922407899|ref|XP_013617527.1| (PREDICTED: small ubiquitin-related modifier 1-like [Brassica oleracea var. oleracea])

HSP 1 Score: 178.7 bits (452), Expect = 4.800e-42
Identity = 86/94 (91.49%), Postives = 90/94 (95.74%), Query Frame = 1 

		  

Query: 1  MSGTQEEDKKPGGDQAAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIA 60
          MS TQEEDKKPGGD   HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV++N+IA
Sbjct: 1  MSATQEEDKKPGGDGGVHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNAIA 60

Query: 61 FLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGG 95
          FLFDGRRLRAEQTPDEL+MEDGDEIDAMLHQTGG
Sbjct: 61 FLFDGRRLRAEQTPDELDMEDGDEIDAMLHQTGG 94
[Close]
BLAST of Spo14153.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QBN8_SPIOL (Small ubiquitin-related modifier OS=Spinacia oleracea GN=SOVF_197390 PE=3 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 2.000e-47
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 

		  

Query: 1  MSGTQEEDKKPGGDQAAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIA 60
          MSGTQEEDKKPGGDQAAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIA
Sbjct: 1  MSGTQEEDKKPGGDQAAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIA 60

Query: 61 FLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGAMI 98
          FLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGAMI
Sbjct: 61 FLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGAMI 97
[Close]
BLAST of Spo14153.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CL60_BETVU (Small ubiquitin-related modifier OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g088830 PE=3 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 3.600e-44
Identity = 92/97 (94.85%), Postives = 96/97 (98.97%), Query Frame = 1 

		  

Query: 1  MSGTQEEDKKPGGDQAAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIA 60
          MSGTQEEDKKPG DQ+AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIA
Sbjct: 1  MSGTQEEDKKPG-DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIA 60

Query: 61 FLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGAMI 98
          FLFDGRRLRAEQTP+ELEMEDGDEIDAMLHQTGG+M+
Sbjct: 61 FLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGSMV 96
[Close]
BLAST of Spo14153.1 vs. UniProtKB/TrEMBL
Match: A0A061DKL7_THECC (Small ubiquitin-like modifier 1, 1,SUMO1,ATSUMO1 (Fragment) OS=Theobroma cacao GN=TCM_002167 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.200e-42
Identity = 89/94 (94.68%), Postives = 89/94 (94.68%), Query Frame = 1 

		  

Query: 1   MSGTQEEDKKPGGDQAAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIA 60
           MSG QEEDKKPG   AAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIA
Sbjct: 30  MSGQQEEDKKPGDQSAAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIA 89

Query: 61  FLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGG 95
           FLFDGRRLR EQTPDELEMEDGDEIDAMLHQTGG
Sbjct: 90  FLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 123
[Close]
BLAST of Spo14153.1 vs. UniProtKB/TrEMBL
Match: M4EC90_BRARP (Small ubiquitin-related modifier OS=Brassica rapa subsp. pekinensis PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 3.400e-42
Identity = 86/94 (91.49%), Postives = 90/94 (95.74%), Query Frame = 1 

		  

Query: 1  MSGTQEEDKKPGGDQAAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIA 60
          MS TQEEDKKPGGD   HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV++N+IA
Sbjct: 1  MSATQEEDKKPGGDGGVHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNAIA 60

Query: 61 FLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGG 95
          FLFDGRRLRAEQTPDEL+MEDGDEIDAMLHQTGG
Sbjct: 61 FLFDGRRLRAEQTPDELDMEDGDEIDAMLHQTGG 94
[Close]
BLAST of Spo14153.1 vs. UniProtKB/TrEMBL
Match: A0A078GXA8_BRANA (Small ubiquitin-related modifier OS=Brassica napus GN=BnaC01g19050D PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 3.400e-42
Identity = 86/94 (91.49%), Postives = 90/94 (95.74%), Query Frame = 1 

		  

Query: 1  MSGTQEEDKKPGGDQAAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIA 60
          MS TQEEDKKPGGD   HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV++N+IA
Sbjct: 1  MSATQEEDKKPGGDGGVHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNAIA 60

Query: 61 FLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGG 95
          FLFDGRRLRAEQTPDEL+MEDGDEIDAMLHQTGG
Sbjct: 61 FLFDGRRLRAEQTPDELDMEDGDEIDAMLHQTGG 94
[Close]
BLAST of Spo14153.1 vs. ExPASy Swiss-Prot
Match: SUMO1_ARATH (Small ubiquitin-related modifier 1 OS=Arabidopsis thaliana GN=SUMO1 PE=1 SV=2)

HSP 1 Score: 173.3 bits (438), Expect = 1.300e-42
Identity = 86/95 (90.53%), Postives = 90/95 (94.74%), Query Frame = 1 

		  

Query: 1  MSGTQEEDKKPGGDQAAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIA 60
          MS  QEEDKKPG D  AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV++NSIA
Sbjct: 1  MSANQEEDKKPG-DGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNSIA 60

Query: 61 FLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGA 96
          FLFDGRRLRAEQTPDEL+MEDGDEIDAMLHQTGG+
Sbjct: 61 FLFDGRRLRAEQTPDELDMEDGDEIDAMLHQTGGS 94
[Close]
BLAST of Spo14153.1 vs. ExPASy Swiss-Prot
Match: SUMO2_ARATH (Small ubiquitin-related modifier 2 OS=Arabidopsis thaliana GN=SUMO2 PE=1 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 1.700e-42
Identity = 87/94 (92.55%), Postives = 88/94 (93.62%), Query Frame = 1 

		  

Query: 1  MSGTQEEDKKPGGDQAAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIA 60
          MS T EEDKKP  DQ AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV+ NSIA
Sbjct: 1  MSATPEEDKKP--DQGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDFNSIA 60

Query: 61 FLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGG 95
          FLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGG
Sbjct: 61 FLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGG 92
[Close]
BLAST of Spo14153.1 vs. ExPASy Swiss-Prot
Match: SUMO1_ORYSJ (Small ubiquitin-related modifier 1 OS=Oryza sativa subsp. japonica GN=SUMO1 PE=1 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 7.000e-41
Identity = 83/98 (84.69%), Postives = 88/98 (89.80%), Query Frame = 1 

		  

Query: 1  MSGTQEEDKKPGGDQA--AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNS 60
          MS   EEDKKP G +   AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV++N+
Sbjct: 1  MSAAGEEDKKPAGGEGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNA 60

Query: 61 IAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGAM 97
          IAFLFDGRRLR EQTPDELEMEDGDEIDAMLHQTGG +
Sbjct: 61 IAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGCL 98
[Close]
BLAST of Spo14153.1 vs. ExPASy Swiss-Prot
Match: PMT3_SCHPO (Ubiquitin-like protein pmt3/smt3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pmt3 PE=1 SV=2)

HSP 1 Score: 108.6 bits (270), Expect = 3.900e-23
Identity = 52/91 (57.14%), Postives = 67/91 (73.63%), Query Frame = 1 

		  

Query: 4   TQEEDKKPGGDQAAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLF 63
           T ++D KP  +   HINLKV GQD NEVFF+IK++T+  KLM  YC RQ   +NS+ FL 
Sbjct: 24  TSQQDVKPSTE---HINLKVVGQDNNEVFFKIKKTTEFSKLMKIYCARQGKSMNSLRFLV 83

Query: 64  DGRRLRAEQTPDELEMEDGDEIDAMLHQTGG 95
           DG R+R +QTP EL+MEDGD+I+A+L Q GG
Sbjct: 84  DGERIRPDQTPAELDMEDGDQIEAVLEQLGG 111
[Close]
BLAST of Spo14153.1 vs. ExPASy Swiss-Prot
Match: SUMO3_ARATH (Small ubiquitin-related modifier 3 OS=Arabidopsis thaliana GN=SUMO3 PE=1 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.000e-20
Identity = 47/89 (52.81%), Postives = 65/89 (73.03%), Query Frame = 1 

		  

Query: 6  EEDKKPGGDQAAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDG 65
          ++DK    +Q AH+ LKVK QDG+EV F+ K+S  LKKLM  YCDR+ ++L++ AF+F+G
Sbjct: 5  QDDKPIDQEQEAHVILKVKSQDGDEVLFKNKKSAPLKKLMYVYCDRRGLKLDAFAFIFNG 64

Query: 66 RRLRAEQTPDELEMEDGDEIDAMLHQTGG 95
           R+   +TPDEL+MEDGD IDA    +GG
Sbjct: 65 ARIGGLETPDELDMEDGDVIDACRAMSGG 93
[Close]
BLAST of Spo14153.1 vs. TAIR (Arabidopsis)
Match: AT4G26840.1 (small ubiquitin-like modifier 1)

HSP 1 Score: 173.3 bits (438), Expect = 7.200e-44
Identity = 86/95 (90.53%), Postives = 90/95 (94.74%), Query Frame = 1 

		  

Query: 1  MSGTQEEDKKPGGDQAAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIA 60
          MS  QEEDKKPG D  AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV++NSIA
Sbjct: 1  MSANQEEDKKPG-DGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNSIA 60

Query: 61 FLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGA 96
          FLFDGRRLRAEQTPDEL+MEDGDEIDAMLHQTGG+
Sbjct: 61 FLFDGRRLRAEQTPDELDMEDGDEIDAMLHQTGGS 94
[Close]
BLAST of Spo14153.1 vs. TAIR (Arabidopsis)
Match: AT5G55160.2 (small ubiquitin-like modifier 2)

HSP 1 Score: 163.7 bits (413), Expect = 5.700e-41
Identity = 87/107 (81.31%), Postives = 88/107 (82.24%), Query Frame = 1 

		  

Query: 1   MSGTQEEDKKPGGDQAAHINLKVKGQ-------------DGNEVFFRIKRSTQLKKLMNA 60
           MS T EEDKKP  DQ AHINLKVKGQ             DGNEVFFRIKRSTQLKKLMNA
Sbjct: 1   MSATPEEDKKP--DQGAHINLKVKGQAFFVVGTWLVIDTDGNEVFFRIKRSTQLKKLMNA 60

Query: 61  YCDRQSVELNSIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGG 95
           YCDRQSV+ NSIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGG
Sbjct: 61  YCDRQSVDFNSIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGG 105
[Close]
BLAST of Spo14153.1 vs. TAIR (Arabidopsis)
Match: AT5G55170.1 (small ubiquitin-like modifier 3)

HSP 1 Score: 98.6 bits (244), Expect = 2.200e-21
Identity = 47/89 (52.81%), Postives = 65/89 (73.03%), Query Frame = 1 

		  

Query: 6  EEDKKPGGDQAAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDG 65
          ++DK    +Q AH+ LKVK QDG+EV F+ K+S  LKKLM  YCDR+ ++L++ AF+F+G
Sbjct: 5  QDDKPIDQEQEAHVILKVKSQDGDEVLFKNKKSAPLKKLMYVYCDRRGLKLDAFAFIFNG 64

Query: 66 RRLRAEQTPDELEMEDGDEIDAMLHQTGG 95
           R+   +TPDEL+MEDGD IDA    +GG
Sbjct: 65 ARIGGLETPDELDMEDGDVIDACRAMSGG 93
[Close]
BLAST of Spo14153.1 vs. TAIR (Arabidopsis)
Match: AT5G55856.1 (Ubiquitin-like superfamily protein)

HSP 1 Score: 89.7 bits (221), Expect = 1.000e-18
Identity = 45/87 (51.72%), Postives = 63/87 (72.41%), Query Frame = 1 

		  

Query: 8  DKKPGGDQAAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRR 67
          DKKP    ++HI +KVK QD   V+FRIKR  +L+K+M+AY D+  VE++++ FLFDG R
Sbjct: 5  DKKPL-IPSSHITVKVKNQDDICVYFRIKRDVELRKMMHAYSDKVGVEMSTLRFLFDGNR 64

Query: 68 LRAEQTPDELEMEDGDEIDAMLHQTGG 95
          ++  QTP+EL +ED DEI+A   Q GG
Sbjct: 65 IKLNQTPNELGLEDEDEIEAFGEQLGG 90
[Close]
BLAST of Spo14153.1 vs. TAIR (Arabidopsis)
Match: AT5G48710.1 (Ubiquitin-like superfamily protein)

HSP 1 Score: 80.1 bits (196), Expect = 8.300e-16
Identity = 42/90 (46.67%), Postives = 55/90 (61.11%), Query Frame = 1 

		  

Query: 6   EEDKKPGGDQAAHINLKVKGQDGNEV-FFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFD 65
           E  K+       H+ LKVKGQD  +   F ++R+ +L K+M  Y   + +E N+  FLFD
Sbjct: 15  EGQKRKVVSDPTHVTLKVKGQDEEDFRVFWVRRNAKLLKMMELYTKMRGIEWNTFRFLFD 74

Query: 66  GRRLRAEQTPDELEMEDGDEIDAMLHQTGG 95
           G R+R   TPDELE +DGDEIDAML Q  G
Sbjct: 75  GSRIREYHTPDELERKDGDEIDAMLCQQSG 104
The following BLAST results are available for this feature:
BLAST of Spo14153.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902141134|gb|KNA04684.1|2.9e-47100.hypothetical protein SOVF_1973... [more]
gi|731329735|ref|XP_010675753.1|5.2e-4494.8PREDICTED: small ubiquitin-rel... [more]
gi|590711666|ref|XP_007049172.1|1.7e-4294.6Small ubiquitin-like modifier ... [more]
gi|697104563|ref|XP_009606082.1|3.7e-4291.7PREDICTED: small ubiquitin-rel... [more]
gi|922407899|ref|XP_013617527.1|4.8e-4291.4PREDICTED: small ubiquitin-rel... [more]
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BLAST of Spo14153.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QBN8_SPIOL2.0e-47100.Small ubiquitin-related modifi... [more]
A0A0J8CL60_BETVU3.6e-4494.8Small ubiquitin-related modifi... [more]
A0A061DKL7_THECC1.2e-4294.6Small ubiquitin-like modifier ... [more]
M4EC90_BRARP3.4e-4291.4Small ubiquitin-related modifi... [more]
A0A078GXA8_BRANA3.4e-4291.4Small ubiquitin-related modifi... [more]
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BLAST of Spo14153.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SUMO1_ARATH1.3e-4290.5Small ubiquitin-related modifi... [more]
SUMO2_ARATH1.7e-4292.5Small ubiquitin-related modifi... [more]
SUMO1_ORYSJ7.0e-4184.6Small ubiquitin-related modifi... [more]
PMT3_SCHPO3.9e-2357.1Ubiquitin-like protein pmt3/sm... [more]
SUMO3_ARATH4.0e-2052.8Small ubiquitin-related modifi... [more]
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BLAST of Spo14153.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT4G26840.17.2e-4490.5small ubiquitin-like modifier ... [more]
AT5G55160.25.7e-4181.3small ubiquitin-like modifier ... [more]
AT5G55170.12.2e-2152.8small ubiquitin-like modifier ... [more]
AT5G55856.11.0e-1851.7Ubiquitin-like superfamily pro... [more]
AT5G48710.18.3e-1646.6Ubiquitin-like superfamily pro... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000626Ubiquitin domainSMARTSM00213ubq_7coord: 19..90
score: 1.1
IPR000626Ubiquitin domainPROFILEPS50053UBIQUITIN_2coord: 17..94
score: 16
IPR022617Rad60/SUMO-like domainPFAMPF11976Rad60-SLDcoord: 19..89
score: 1.1
NoneNo IPR availableGENE3D3.10.20.90coord: 11..94
score: 4.1
NoneNo IPR availablePANTHERPTHR10562SMALL UBIQUITIN-RELATED MODIFIERcoord: 2..96
score: 1.6
NoneNo IPR availablePANTHERPTHR10562:SF26SUBFAMILY NOT NAMEDcoord: 2..96
score: 1.6

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007010 cytoskeleton organization
biological_process GO:0007033 vacuole organization
biological_process GO:0015991 ATP hydrolysis coupled proton transport
biological_process GO:0016192 vesicle-mediated transport
biological_process GO:0006886 intracellular protein transport
biological_process GO:0006412 translation
biological_process GO:0001510 RNA methylation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0009664 plant-type cell wall organization
biological_process GO:0042545 cell wall modification
biological_process GO:0010103 stomatal complex morphogenesis
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:0006094 gluconeogenesis
biological_process GO:0006897 endocytosis
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0055085 transmembrane transport
biological_process GO:0009651 response to salt stress
biological_process GO:0006816 calcium ion transport
biological_process GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation
biological_process GO:0006007 glucose catabolic process
biological_process GO:0007030 Golgi organization
biological_process GO:0006623 protein targeting to vacuole
biological_process GO:0010498 proteasomal protein catabolic process
biological_process GO:1902600 proton transmembrane transport
biological_process GO:0009086 methionine biosynthetic process
cellular_component GO:0005795 Golgi stack
cellular_component GO:0016020 membrane
cellular_component GO:0031410 cytoplasmic vesicle
cellular_component GO:0033179 proton-transporting V-type ATPase, V0 domain
cellular_component GO:0009506 plasmodesma
cellular_component GO:0005777 peroxisome
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005618 cell wall
cellular_component GO:0005634 nucleus
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0000325 plant-type vacuole
cellular_component GO:0005886 plasma membrane
cellular_component GO:0009507 chloroplast
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005525 GTP binding
molecular_function GO:0005515 protein binding
molecular_function GO:0042626 ATPase activity, coupled to transmembrane movement of substances
molecular_function GO:0005484 SNAP receptor activity
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0046872 metal ion binding
molecular_function GO:0015078 proton transmembrane transporter activity
molecular_function GO:0031386 protein tag
molecular_function GO:0047617 acyl-CoA hydrolase activity
RNA-Seq Expression