Spo14194 (gene) | SpinachBase

Overview


Name	Spo14194
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	rRNA intron-encoded homing endonuclease, putative
Location	SpoScf_23462 : 372 .. 935 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAGCTCGTAGTTGGACCTTGGGGTGGTACGACCGGTCTGCCTTTTGGTGTGCACCGGCCGTCTCGCCTCTTTCGCCGGCGATGCGCTCCTGGCCTTAATTGGCCGGGTCGTGCCTCCGGCACTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCATGGGATAACATTATAGGATTCCGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATCGGCGGATGTTACTTTTAGGACGCCGCCGGCACCTTATGAGAAATCAAAGTTTTTGGGTTCCGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCT

mRNA sequence

AAAAAGCTCGTAGTTGGACCTTGGGGTGGTACGACCGGTCTGCCTTTTGGTGTGCACCGGCCGTCTCGCCTCTTTCGCCGGCGATGCGCTCCTGGCCTTAATTGGCCGGGTCGTGCCTCCGGCACTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCATGGGATAACATTATAGGATTCCGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATCGGCGGATGTTACTTTTAGGACGCCGCCGGCACCTTATGAGAAATCAAAGTTTTTGGGTTCCGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCT

Coding sequence (CDS)

AAAAAGCTCGTAGTTGGACCTTGGGGTGGTACGACCGGTCTGCCTTTTGGTGTGCACCGGCCGTCTCGCCTCTTTCGCCGGCGATGCGCTCCTGGCCTTAATTGGCCGGGTCGTGCCTCCGGCACTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCATGGGATAACATTATAGGATTCCGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATCGGCGGATGTTACTTTTAGGACGCCGCCGGCACCTTATGAGAAATCAAAGTTTTTGGGTTCCGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCT

Protein sequence

KKLVVGPWGGTTGLPFGVHRPSRLFRRRCAPGLNWPGRASGTVTLKKLECSKQAYALYTLAWDNIIGFRRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSKFLGSGGSMVARLKLKGIDGRAPPGVEPAA

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo14194.1	Spo14194.1	mRNA

Homology

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BLAST of Spo14194.1 vs. NCBI nr
Match: gi|703137890|ref|XP_010106597.1| (hypothetical protein L484_002552 [Morus notabilis])

HSP 1 Score: 264.6 bits (675), Expect = 1.100e-67
Identity = 131/138 (94.93%), Postives = 132/138 (95.65%), Query Frame = 1

		  
Query: 17  GVHRPSRLFRRRCAPGLNWPGRASGTVTLKKLECSKQAYALYTLAWDNIIGFRRTTAKAF 76
           GVHR +R F RRCAPGLNWPGRASG VTLKKLECSKQAYALYTLAWDNIIGFRRTTAKAF
Sbjct: 55  GVHRSARPFCRRCAPGLNWPGRASGAVTLKKLECSKQAYALYTLAWDNIIGFRRTTAKAF 114

Query: 77  AKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSKFLGSGGSMVAR 136
           AKDVFINQERKLGARRRSDTVLVSTINDADQGSADV FRTP APYEKSKFLGSGGSMVAR
Sbjct: 115 AKDVFINQERKLGARRRSDTVLVSTINDADQGSADVAFRTPLAPYEKSKFLGSGGSMVAR 174

Query: 137 LKLKGIDGRAPPGVEPAA 155
           LKLKGIDGRAPPGVEPAA
Sbjct: 175 LKLKGIDGRAPPGVEPAA 192

[Close]

BLAST of Spo14194.1 vs. NCBI nr
Match: gi|694380941|ref|XP_009366572.1| (PREDICTED: uncharacterized protein LOC103956333 [Pyrus x bretschneideri])

HSP 1 Score: 224.6 bits (571), Expect = 1.200e-55
Identity = 118/142 (83.10%), Postives = 121/142 (85.21%), Query Frame = 1

		  
Query: 17  GVHRPSRLFRRRCAPGLNWPGRASGTVTLKKLECSKQAYALYTLAWD-----NIIGFRRT 76
           GVHR +R F RR APGLNWPGRASG VTLKKLECSKQ +    LA+      N     RT
Sbjct: 228 GVHRSARPFCRRYAPGLNWPGRASGAVTLKKLECSKQDFGPILLAFGIGVMINRDSRGRT 287

Query: 77  TAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSKFLGSGG 136
           TAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSKFLGSGG
Sbjct: 288 TAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSKFLGSGG 347

Query: 137 SMVARLKLKGIDGRAPPGVEPA 154
           SMVARLKLKGIDGRAPPGVEPA
Sbjct: 348 SMVARLKLKGIDGRAPPGVEPA 369

[Close]

BLAST of Spo14194.1 vs. NCBI nr
Match: gi|823127874|ref|XP_012440607.1| (PREDICTED: uncharacterized protein LOC105765883 [Gossypium raimondii])

HSP 1 Score: 221.1 bits (562), Expect = 1.400e-54
Identity = 115/151 (76.16%), Postives = 120/151 (79.47%), Query Frame = 1

		  
Query: 1   KKLVVGPWGGTTGLPFGVHRPSRLFRRRCAPGLNWPGRASGTVTLKKLECSKQAYALYTL 60
           KKLVVG  GG+ G P G HR +R + RRCAPGLNWPGR+S  VTLKKLECSKQAYA    
Sbjct: 41  KKLVVGLRGGSAGPPHGEHRSARPYCRRCAPGLNWPGRSSDAVTLKKLECSKQAYA---- 100

Query: 61  AWDNIIGFRRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAP 120
                         +FAKDVFINQERKLGARRRSDTVLVSTINDADQGSADV FRTPPAP
Sbjct: 101 --------------SFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVAFRTPPAP 160

Query: 121 YEKSKFLGSGGSMVARLKLKGIDGRAPPGVE 152
           YEKSK LGSGGSMVARLKLKGIDGRAPPGVE
Sbjct: 161 YEKSKSLGSGGSMVARLKLKGIDGRAPPGVE 173

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BLAST of Spo14194.1 vs. NCBI nr
Match: gi|922327155|ref|XP_013442970.1| (hypothetical protein MTR_0055s0130 [Medicago truncatula])

HSP 1 Score: 218.4 bits (555), Expect = 8.800e-54
Identity = 116/143 (81.12%), Postives = 119/143 (83.22%), Query Frame = 1

		  
Query: 16  FGVHRPSRLFRRRCAPGLNWPGRASGTVTLKKLECSKQAYALYTLAWD-----NIIGFRR 75
           +GVHR +R F RRCAPGLNWPGRASG VTLKKLECSKQ      LA+      N     R
Sbjct: 485 YGVHRLARPFCRRCAPGLNWPGRASGAVTLKKLECSKQDSDPIVLAFGIGVMINRDSRGR 544

Query: 76  TTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSKFLGSG 135
           TTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADV FRTP APYEKSK LGSG
Sbjct: 545 TTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVAFRTPLAPYEKSKSLGSG 604

Query: 136 GSMVARLKLKGIDGRAPPGVEPA 154
           GSMVARLKLKGIDGRAPPGVEPA
Sbjct: 605 GSMVARLKLKGIDGRAPPGVEPA 627

[Close]

BLAST of Spo14194.1 vs. NCBI nr
Match: gi|947068904|gb|KRH17795.1| (hypothetical protein GLYMA_13G016700 [Glycine max])

HSP 1 Score: 215.7 bits (548), Expect = 5.700e-53
Identity = 116/143 (81.12%), Postives = 118/143 (82.52%), Query Frame = 1

		  
Query: 17  GVHRPSRLFRRRCAPGLNWPGRASGTVTLKKLECSKQAYALYTLAWD-----NIIGFRRT 76
           GVHR +R F RRCAP LNWPGRASG VTLKKLECSKQ      LA+      N     RT
Sbjct: 128 GVHRSARPFCRRCAPVLNWPGRASGAVTLKKLECSKQDSDPIVLAFGIGVMINRDSRGRT 187

Query: 77  TAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSKFLGSGG 136
           TAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADV FRTP APYEKSK LGSGG
Sbjct: 188 TAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVAFRTPLAPYEKSKSLGSGG 247

Query: 137 SMVARLKLKGIDGRAPPGVEPAA 155
           SMVARLKLKGIDGRAPPGVEPAA
Sbjct: 248 SMVARLKLKGIDGRAPPGVEPAA 270

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BLAST of Spo14194.1 vs. UniProtKB/TrEMBL
Match: M1DUP9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400044276 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 1.100e-68
Identity = 132/137 (96.35%), Postives = 132/137 (96.35%), Query Frame = 1

		  
Query: 18  VHRPSRLFRRRCAPGLNWPGRASGTVTLKKLECSKQAYALYTLAWDNIIGFRRTTAKAFA 77
           VHR SR F RRCAPGLNWPGRASG VTLKKLECSKQAYALYTLAWDNIIGFRRTTAKAFA
Sbjct: 49  VHRSSRPFCRRCAPGLNWPGRASGAVTLKKLECSKQAYALYTLAWDNIIGFRRTTAKAFA 108

Query: 78  KDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSKFLGSGGSMVARL 137
           KDVFINQERKLGARRRSDTVLVSTINDADQGSADV FRTPPAPYEKSKFLGSGGSMVARL
Sbjct: 109 KDVFINQERKLGARRRSDTVLVSTINDADQGSADVAFRTPPAPYEKSKFLGSGGSMVARL 168

Query: 138 KLKGIDGRAPPGVEPAA 155
           KLKGIDGRAPPGVEPAA
Sbjct: 169 KLKGIDGRAPPGVEPAA 185

[Close]

BLAST of Spo14194.1 vs. UniProtKB/TrEMBL
Match: W9SJ11_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_002552 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 7.400e-68
Identity = 131/138 (94.93%), Postives = 132/138 (95.65%), Query Frame = 1

		  
Query: 17  GVHRPSRLFRRRCAPGLNWPGRASGTVTLKKLECSKQAYALYTLAWDNIIGFRRTTAKAF 76
           GVHR +R F RRCAPGLNWPGRASG VTLKKLECSKQAYALYTLAWDNIIGFRRTTAKAF
Sbjct: 55  GVHRSARPFCRRCAPGLNWPGRASGAVTLKKLECSKQAYALYTLAWDNIIGFRRTTAKAF 114

Query: 77  AKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSKFLGSGGSMVAR 136
           AKDVFINQERKLGARRRSDTVLVSTINDADQGSADV FRTP APYEKSKFLGSGGSMVAR
Sbjct: 115 AKDVFINQERKLGARRRSDTVLVSTINDADQGSADVAFRTPLAPYEKSKFLGSGGSMVAR 174

Query: 137 LKLKGIDGRAPPGVEPAA 155
           LKLKGIDGRAPPGVEPAA
Sbjct: 175 LKLKGIDGRAPPGVEPAA 192

[Close]

BLAST of Spo14194.1 vs. UniProtKB/TrEMBL
Match: M1DB49_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400035737 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 6.500e-64
Identity = 124/130 (95.38%), Postives = 126/130 (96.92%), Query Frame = 1

		  
Query: 25  FRRRCAPGLNWPGRASGTVTLKKLECSKQAYALYTLAWDNIIGFRRTTAKAFAKDVFINQ 84
           F RRCAPGLNWPGRASG VTLKKLECSKQAYALYTLAWDNIIGFRRTTAKAFAKDVFINQ
Sbjct: 5   FCRRCAPGLNWPGRASGAVTLKKLECSKQAYALYTLAWDNIIGFRRTTAKAFAKDVFINQ 64

Query: 85  ERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSKFLGSGGSMVARLKLKGIDG 144
           ERKLGARRRSDTVLVSTINDADQGSADV FRTPPAPYEKSKFLGSGGS+VARLKLKGIDG
Sbjct: 65  ERKLGARRRSDTVLVSTINDADQGSADVAFRTPPAPYEKSKFLGSGGSIVARLKLKGIDG 124

Query: 145 RAPPGVEPAA 155
           +APPGVE AA
Sbjct: 125 KAPPGVELAA 134

[Close]

BLAST of Spo14194.1 vs. UniProtKB/TrEMBL
Match: A0A0D2ZQ67_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 8.200e-59
Identity = 120/142 (84.51%), Postives = 124/142 (87.32%), Query Frame = 1

		  
Query: 17  GVHRPSRLFRRRCAPGLNWPGRASGTVTLKKLECSKQAYALYTLAWDNIIGFRRTTA--- 76
           G+HR +  F R+ APGLNWPGRASG VTLKKLECSKQAY LYTLAWDNIIGF    A   
Sbjct: 189 GMHRSACPFCRQYAPGLNWPGRASGAVTLKKLECSKQAYTLYTLAWDNIIGFLSYCAGLQ 248

Query: 77  -KAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSKFLGSGGS 136
            + FAKDVFINQERKLGARRRSDTVLVSTINDADQGSADV FRTP APYEKSKFLGSGGS
Sbjct: 249 DRTFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVAFRTPLAPYEKSKFLGSGGS 308

Query: 137 MVARLKLKGIDGRAPPGVEPAA 155
           MVARLKLKGIDGRAPPGVEPAA
Sbjct: 309 MVARLKLKGIDGRAPPGVEPAA 330

[Close]

BLAST of Spo14194.1 vs. UniProtKB/TrEMBL
Match: A0A072TTW7_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_0055s0130 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 6.100e-54
Identity = 116/143 (81.12%), Postives = 119/143 (83.22%), Query Frame = 1

		  
Query: 16  FGVHRPSRLFRRRCAPGLNWPGRASGTVTLKKLECSKQAYALYTLAWD-----NIIGFRR 75
           +GVHR +R F RRCAPGLNWPGRASG VTLKKLECSKQ      LA+      N     R
Sbjct: 485 YGVHRLARPFCRRCAPGLNWPGRASGAVTLKKLECSKQDSDPIVLAFGIGVMINRDSRGR 544

Query: 76  TTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSKFLGSG 135
           TTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADV FRTP APYEKSK LGSG
Sbjct: 545 TTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVAFRTPLAPYEKSKSLGSG 604

Query: 136 GSMVARLKLKGIDGRAPPGVEPA 154
           GSMVARLKLKGIDGRAPPGVEPA
Sbjct: 605 GSMVARLKLKGIDGRAPPGVEPA 627

The following BLAST results are available for this feature:

BLAST of Spo14194.1 vs. NCBI nr
BLAST of Spo14194.1 vs. UniProtKB/TrEMBL
BLAST of Spo14194.1 vs. ExPASy Swiss-Prot
BLAST of Spo14194.1 vs. TAIR (Arabidopsis)

BLAST of Spo14194.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|703137890\|ref\|XP_010106597.1\|	1.1e-67	94.9	hypothetical protein L484_0025...	[more]
gi\|694380941\|ref\|XP_009366572.1\|	1.2e-55	83.1	PREDICTED: uncharacterized pro...	[more]
gi\|823127874\|ref\|XP_012440607.1\|	1.4e-54	76.1	PREDICTED: uncharacterized pro...	[more]
gi\|922327155\|ref\|XP_013442970.1\|	8.8e-54	81.1	hypothetical protein MTR_0055s...	[more]
gi\|947068904\|gb\|KRH17795.1\|	5.7e-53	81.1	hypothetical protein GLYMA_13G...	[more]

BLAST of Spo14194.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
M1DUP9_SOLTU	1.1e-68	96.3	Uncharacterized protein OS=Sol...	[more]
W9SJ11_9ROSA	7.4e-68	94.9	Uncharacterized protein OS=Mor...	[more]
M1DB49_SOLTU	6.5e-64	95.3	Uncharacterized protein OS=Sol...	[more]
A0A0D2ZQ67_BRAOL	8.2e-59	84.5	Uncharacterized protein OS=Bra...	[more]
A0A072TTW7_MEDTR	6.1e-54	81.1	Uncharacterized protein OS=Med...	[more]

BLAST of Spo14194.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo14194.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34410	FAMILY NOT NAMED	coord: 59..154 score: 7.4
None	No IPR available	PANTHER	PTHR34410:SF2	SUBFAMILY NOT NAMED	coord: 59..154 score: 7.4

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006506	GPI anchor biosynthetic process
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006606	protein import into nucleus
biological_process	GO:0031348	negative regulation of defense response
biological_process	GO:0006810	transport
biological_process	GO:0000278	mitotic cell cycle
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006354	DNA-templated transcription, elongation
biological_process	GO:0006412	translation
biological_process	GO:0016246	RNA interference
biological_process	GO:0006346	methylation-dependent chromatin silencing
biological_process	GO:0080129	proteasome core complex assembly
biological_process	GO:0009735	response to cytokinin
biological_process	GO:0051788	response to misfolded protein
biological_process	GO:0001510	RNA methylation
biological_process	GO:0006857	oligopeptide transport
biological_process	GO:0009816	defense response to bacterium, incompatible interaction
biological_process	GO:0009058	biosynthetic process
biological_process	GO:0043687	post-translational protein modification
biological_process	GO:0006396	RNA processing
biological_process	GO:0044262	cellular carbohydrate metabolic process
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006486	protein glycosylation
biological_process	GO:0006897	endocytosis
biological_process	GO:0009407	toxin catabolic process
biological_process	GO:0009651	response to salt stress
biological_process	GO:0006909	phagocytosis
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process	GO:0008152	metabolic process
biological_process	GO:0046777	protein autophosphorylation
biological_process	GO:0009069	serine family amino acid metabolic process
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0042545	cell wall modification
biological_process	GO:0009664	plant-type cell wall organization
biological_process	GO:0006508	proteolysis
biological_process	GO:0080167	response to karrikin
biological_process	GO:0010048	vernalization response
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0044085	cellular component biogenesis
biological_process	GO:0006629	lipid metabolic process
biological_process	GO:0042967	obsolete acyl-carrier-protein biosynthetic process
biological_process	GO:0016998	cell wall macromolecule catabolic process
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0016579	protein deubiquitination
biological_process	GO:0048767	root hair elongation
biological_process	GO:0006623	protein targeting to vacuole
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0016558	protein import into peroxisome matrix
biological_process	GO:0006547	histidine metabolic process
biological_process	GO:0006636	unsaturated fatty acid biosynthetic process
biological_process	GO:0006427	histidyl-tRNA aminoacylation
biological_process	GO:0006635	fatty acid beta-oxidation
biological_process	GO:0006499	N-terminal protein myristoylation
biological_process	GO:0009932	cell tip growth
biological_process	GO:0043248	proteasome assembly
biological_process	GO:0030001	metal ion transport
biological_process	GO:0006470	protein dephosphorylation
biological_process	GO:0045892	negative regulation of transcription, DNA-templated
biological_process	GO:0006766	vitamin metabolic process
biological_process	GO:0019748	secondary metabolic process
biological_process	GO:0034660	ncRNA metabolic process
biological_process	GO:0030154	cell differentiation
biological_process	GO:0009657	plastid organization
biological_process	GO:0015031	protein transport
biological_process	GO:0031323	regulation of cellular metabolic process
biological_process	GO:0060255	regulation of macromolecule metabolic process
biological_process	GO:0080090	regulation of primary metabolic process
biological_process	GO:0044070	regulation of anion transport
biological_process	GO:0009073	aromatic amino acid family biosynthetic process
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0009249	protein lipoylation
biological_process	GO:0006546	glycine catabolic process
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0009695	jasmonic acid biosynthetic process
biological_process	GO:0009965	leaf morphogenesis
biological_process	GO:0009107	lipoate biosynthetic process
biological_process	GO:0009117	nucleotide metabolic process
biological_process	GO:0006733	oxidoreduction coenzyme metabolic process
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0032259	methylation
biological_process	GO:0006465	signal peptide processing
biological_process	GO:0009987	cellular process
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0007033	vacuole organization
biological_process	GO:0006833	water transport
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0045116	protein neddylation
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0006782	protoporphyrinogen IX biosynthetic process
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0046686	response to cadmium ion
biological_process	GO:0006744	ubiquinone biosynthetic process
biological_process	GO:0006571	tyrosine biosynthetic process
biological_process	GO:0016255	attachment of GPI anchor to protein
biological_process	GO:0006544	glycine metabolic process
biological_process	GO:0006563	L-serine metabolic process
biological_process	GO:0009089	lysine biosynthetic process via diaminopimelate
biological_process	GO:0009266	response to temperature stimulus
biological_process	GO:0010498	proteasomal protein catabolic process
biological_process	GO:0009088	threonine biosynthetic process
biological_process	GO:0007010	cytoskeleton organization
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0009853	photorespiration
biological_process	GO:0015991	ATP hydrolysis coupled proton transport
biological_process	GO:0006816	calcium ion transport
biological_process	GO:0016049	cell growth
biological_process	GO:0000902	cell morphogenesis
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0009555	pollen development
biological_process	GO:0006007	glucose catabolic process
biological_process	GO:0006096	glycolytic process
biological_process	GO:0007030	Golgi organization
biological_process	GO:0048193	Golgi vesicle transport
biological_process	GO:0006972	hyperosmotic response
biological_process	GO:0006119	oxidative phosphorylation
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0016310	phosphorylation
biological_process	GO:0008643	carbohydrate transport
biological_process	GO:0000162	tryptophan biosynthetic process
biological_process	GO:0051301	cell division
biological_process	GO:0006397	mRNA processing
biological_process	GO:0016120	carotene biosynthetic process
biological_process	GO:0009765	photosynthesis, light harvesting
biological_process	GO:0010103	stomatal complex morphogenesis
biological_process	GO:0016123	xanthophyll biosynthetic process
biological_process	GO:0043631	RNA polyadenylation
biological_process	GO:0009790	embryo development
biological_process	GO:0006090	pyruvate metabolic process
biological_process	GO:2001295	malonyl-CoA biosynthetic process
biological_process	GO:0006633	fatty acid biosynthetic process
biological_process	GO:0009094	L-phenylalanine biosynthetic process
biological_process	GO:0033587	shikimate biosynthetic process
biological_process	GO:0009423	chorismate biosynthetic process
cellular_component	GO:0009343	biotin carboxylase complex
cellular_component	GO:0048471	perinuclear region of cytoplasm
cellular_component	GO:0031410	cytoplasmic vesicle
cellular_component	GO:0048046	apoplast
cellular_component	GO:0005618	cell wall
cellular_component	GO:0005759	mitochondrial matrix
cellular_component	GO:0000139	Golgi membrane
cellular_component	GO:0005856	cytoskeleton
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005665	DNA-directed RNA polymerase II, core complex
cellular_component	GO:0030659	cytoplasmic vesicle membrane
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005839	proteasome core complex
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
cellular_component	GO:0031969	chloroplast membrane
cellular_component	GO:0000502	proteasome complex
cellular_component	GO:0033179	proton-transporting V-type ATPase, V0 domain
cellular_component	GO:0005768	endosome
cellular_component	GO:0005802	trans-Golgi network
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0000325	plant-type vacuole
cellular_component	GO:0046658	anchored component of plasma membrane
cellular_component	GO:0019773	proteasome core complex, alpha-subunit complex
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0042765	GPI-anchor transamidase complex
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005840	ribosome
cellular_component	GO:0055029	nuclear DNA-directed RNA polymerase complex
cellular_component	GO:0005749	mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)
cellular_component	GO:0005829	cytosol
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0008540	proteasome regulatory particle, base subcomplex
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0009505	plant-type cell wall
cellular_component	GO:0009706	chloroplast inner membrane
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0005741	mitochondrial outer membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0009524	phragmoplast
cellular_component	GO:0032991	protein-containing complex
cellular_component	GO:0033180	proton-transporting V-type ATPase, V1 domain
cellular_component	GO:0042651	thylakoid membrane
cellular_component	GO:0009570	chloroplast stroma
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0010181	FMN binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0019706	protein-cysteine S-palmitoyltransferase activity
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0051287	NAD binding
molecular_function	GO:0008081	phosphoric diester hydrolase activity
molecular_function	GO:0032947	protein-containing complex scaffold activity
molecular_function	GO:0003856	3-dehydroquinate synthase activity
molecular_function	GO:0019781	NEDD8 activating enzyme activity
molecular_function	GO:0000035	acyl binding
molecular_function	GO:0042802	identical protein binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0004672	protein kinase activity
molecular_function	GO:0004298	threonine-type endopeptidase activity
molecular_function	GO:0004721	phosphoprotein phosphatase activity
molecular_function	GO:0004072	aspartate kinase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
molecular_function	GO:0045435	lycopene epsilon cyclase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004075	biotin carboxylase activity
molecular_function	GO:0003989	acetyl-CoA carboxylase activity
molecular_function	GO:0004652	polynucleotide adenylyltransferase activity
molecular_function	GO:0016597	amino acid binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0004842	ubiquitin-protein transferase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0005351	carbohydrate:proton symporter activity
molecular_function	GO:0004853	uroporphyrinogen decarboxylase activity
molecular_function	GO:0046961	proton-transporting ATPase activity, rotational mechanism
molecular_function	GO:0002020	protease binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016758	transferase activity, transferring hexosyl groups
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008422	beta-glucosidase activity
molecular_function	GO:0008308	voltage-gated anion channel activity
molecular_function	GO:0016757	transferase activity, transferring glycosyl groups
molecular_function	GO:0015078	proton transmembrane transporter activity
molecular_function	GO:0008236	serine-type peptidase activity
molecular_function	GO:0004821	histidine-tRNA ligase activity
molecular_function	GO:0036459	thiol-dependent ubiquitinyl hydrolase activity
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0004843	thiol-dependent ubiquitin-specific protease activity
molecular_function	GO:0008242	omega peptidase activity
molecular_function	GO:0016992	lipoate synthase activity
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0035673	oligopeptide transmembrane transporter activity
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0008565	protein transporter activity
molecular_function	GO:0042626	ATPase activity, coupled to transmembrane movement of substances
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004683	calmodulin-dependent protein kinase activity
molecular_function	GO:0005516	calmodulin binding
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0043565	sequence-specific DNA binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo12253	0.95	Barchart \| Table
Spo14687	0.95	Barchart \| Table
Spo00936	0.95	Barchart \| Table
Spo05029	0.95	Barchart \| Table
Spo03618	0.94	Barchart \| Table
Spo00898	0.94	Barchart \| Table
Spo24625	0.94	Barchart \| Table
Spo19206	0.89	Barchart \| Table
Spo13459	0.83	Barchart \| Table
Spo14441	0.83	Barchart \| Table
Spo12202	0.81	Barchart \| Table
Spo14849	0.80	Barchart \| Table
Spo15603	0.78	Barchart \| Table
Spo06030	0.78	Barchart \| Table
Spo27102	0.78	Barchart \| Table
Spo14008	0.78	Barchart \| Table
Spo01914	0.77	Barchart \| Table
Spo03608	0.77	Barchart \| Table
Spo04923	0.77	Barchart \| Table
Spo01929	0.77	Barchart \| Table
Spo12942	0.76	Barchart \| Table
Spo06805	0.76	Barchart \| Table
Spo23908	0.76	Barchart \| Table
Spo06681	0.76	Barchart \| Table
Spo12128	0.76	Barchart \| Table
Spo08540	0.76	Barchart \| Table
Spo12176	0.75	Barchart \| Table
Spo17268	0.74	Barchart \| Table
Spo02731	0.74	Barchart \| Table
Spo00175	0.74	Barchart \| Table
Spo16786	0.74	Barchart \| Table
Spo18451	0.74	Barchart \| Table
Spo23329	0.74	Barchart \| Table
Spo09674	0.74	Barchart \| Table
Spo13031	0.74	Barchart \| Table
Spo11733	0.73	Barchart \| Table
Spo21691	0.73	Barchart \| Table
Spo05228	0.73	Barchart \| Table
Spo23717	0.73	Barchart \| Table
Spo16945	0.73	Barchart \| Table
Spo06294	0.73	Barchart \| Table
Spo06962	0.73	Barchart \| Table
Spo12201	0.73	Barchart \| Table
Spo20957	0.72	Barchart \| Table
Spo08969	0.72	Barchart \| Table
Spo17372	0.72	Barchart \| Table
Spo09803	0.72	Barchart \| Table
Spo12663	0.72	Barchart \| Table
Spo02085	0.72	Barchart \| Table
Spo02107	0.72	Barchart \| Table
Spo13579	0.72	Barchart \| Table
Spo05225	0.72	Barchart \| Table
Spo23123	0.72	Barchart \| Table
Spo05531	0.72	Barchart \| Table
Spo05557	0.72	Barchart \| Table
Spo05731	0.72	Barchart \| Table
Spo19558	0.72	Barchart \| Table
Spo01204	0.71	Barchart \| Table
Spo23664	0.71	Barchart \| Table
Spo15420	0.71	Barchart \| Table
Spo10222	0.71	Barchart \| Table
Spo18269	0.71	Barchart \| Table
Spo01231	0.70	Barchart \| Table
Spo25856	0.70	Barchart \| Table
Spo01998	0.70	Barchart \| Table
Spo24309	0.70	Barchart \| Table
Spo03306	0.70	Barchart \| Table
Spo04282	0.70	Barchart \| Table
Spo05487	0.70	Barchart \| Table
Spo22906	0.70	Barchart \| Table
Spo20677	0.70	Barchart \| Table
Spo18714	0.70	Barchart \| Table
Spo06473	0.70	Barchart \| Table
Spo18575	0.70	Barchart \| Table
Spo08546	0.70	Barchart \| Table
Spo17724	0.70	Barchart \| Table
Spo17340	0.69	Barchart \| Table
Spo09949	0.69	Barchart \| Table
Spo17371	0.69	Barchart \| Table
Spo18103	0.69	Barchart \| Table
Spo16821	0.69	Barchart \| Table
Spo18194	0.69	Barchart \| Table
Spo19635	0.69	Barchart \| Table
Spo05655	0.69	Barchart \| Table
Spo05514	0.69	Barchart \| Table
Spo24066	0.69	Barchart \| Table
Spo24712	0.69	Barchart \| Table
Spo00615	0.69	Barchart \| Table
Spo25851	0.69	Barchart \| Table
Spo26266	0.69	Barchart \| Table
Spo01097	0.69	Barchart \| Table
Spo27347	0.69	Barchart \| Table
Spo23679	0.68	Barchart \| Table
Spo00397	0.68	Barchart \| Table
Spo00751	0.68	Barchart \| Table
Spo02184	0.68	Barchart \| Table
Spo10473	0.68	Barchart \| Table
Spo10969	0.68	Barchart \| Table
Spo11098	0.68	Barchart \| Table
Spo14438	0.68	Barchart \| Table
Spo14454	0.68	Barchart \| Table
Spo19172	0.68	Barchart \| Table
Spo19701	0.68	Barchart \| Table
Spo22760	0.68	Barchart \| Table
Spo23710	0.68	Barchart \| Table
Spo24368	0.68	Barchart \| Table
Spo24598	0.68	Barchart \| Table
Spo24857	0.68	Barchart \| Table
Spo27064	0.68	Barchart \| Table
Spo27226	0.68	Barchart \| Table
Spo10940	0.67	Barchart \| Table
Spo11296	0.67	Barchart \| Table
Spo06199	0.67	Barchart \| Table
Spo08999	0.67	Barchart \| Table
Spo15367	0.67	Barchart \| Table
Spo20071	0.67	Barchart \| Table
Spo14777	0.67	Barchart \| Table
Spo05990	0.67	Barchart \| Table
Spo14661	0.67	Barchart \| Table
Spo01048	0.67	Barchart \| Table
Spo08529	0.67	Barchart \| Table
Spo21465	0.67	Barchart \| Table
Spo11266	0.67	Barchart \| Table
Spo21743	0.67	Barchart \| Table
Spo03251	0.67	Barchart \| Table
Spo22592	0.67	Barchart \| Table
Spo17021	0.67	Barchart \| Table
Spo04146	0.67	Barchart \| Table
Spo01357	0.67	Barchart \| Table
Spo16732	0.67	Barchart \| Table
Spo23192	0.67	Barchart \| Table
Spo03196	0.67	Barchart \| Table
Spo06465	0.67	Barchart \| Table
Spo12394	0.67	Barchart \| Table
Spo03197	0.67	Barchart \| Table
Spo24594	0.67	Barchart \| Table
Spo13179	0.67	Barchart \| Table
Spo25445	0.67	Barchart \| Table
Spo03381	0.66	Barchart \| Table
Spo15639	0.66	Barchart \| Table
Spo15865	0.66	Barchart \| Table
Spo11095	0.66	Barchart \| Table
Spo17310	0.66	Barchart \| Table
Spo09015	0.66	Barchart \| Table
Spo07426	0.66	Barchart \| Table
Spo07204	0.66	Barchart \| Table
Spo18459	0.66	Barchart \| Table
Spo18764	0.66	Barchart \| Table
Spo19126	0.66	Barchart \| Table
Spo06464	0.66	Barchart \| Table
Spo06314	0.66	Barchart \| Table
Spo02068	0.66	Barchart \| Table
Spo19874	0.66	Barchart \| Table
Spo20244	0.66	Barchart \| Table
Spo20826	0.66	Barchart \| Table
Spo21067	0.66	Barchart \| Table
Spo05535	0.66	Barchart \| Table
Spo01397	0.66	Barchart \| Table
Spo05341	0.66	Barchart \| Table
Spo23507	0.66	Barchart \| Table
Spo23527	0.66	Barchart \| Table
Spo00049	0.66	Barchart \| Table
Spo23957	0.66	Barchart \| Table
Spo13029	0.66	Barchart \| Table
Spo01181	0.66	Barchart \| Table
Spo24626	0.66	Barchart \| Table
Spo13953	0.66	Barchart \| Table
Spo13516	0.66	Barchart \| Table
Spo14856	0.66	Barchart \| Table
Spo15236	0.66	Barchart \| Table
Spo15270	0.66	Barchart \| Table
Spo05753	0.65	Barchart \| Table
Spo18962	0.65	Barchart \| Table
Spo08850	0.65	Barchart \| Table
Spo18893	0.65	Barchart \| Table
Spo05127	0.65	Barchart \| Table
Spo17391	0.65	Barchart \| Table
Spo07199	0.65	Barchart \| Table
Spo04949	0.65	Barchart \| Table
Spo30013	0.65	Barchart \| Table
Spo22970	0.65	Barchart \| Table
Spo04254	0.65	Barchart \| Table
Spo05515	0.65	Barchart \| Table
Spo08572	0.65	Barchart \| Table
Spo17329	0.65	Barchart \| Table
Spo22256	0.65	Barchart \| Table
Spo24323	0.65	Barchart \| Table