Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GAAGTTGTCAAATTCTTTTCCCTAAAATTACCTACCTTCACCAAACAACATTTTAACCCGCGGTCAACCCTTCCGCGTGATAACGCGTTTCCCAAAATCCGTTATAACTCCCCCCGTCTCTTCAAATTCTAACCTCTGCACCTTCTCCGAAACCGTCACCATCACCTTCAACTACATATATCCCCTTCAATCCCCACCCAATTTCCTCATTCTCTCTCCTACTCAACCGCAACCCCACCGCCGCCACAACAACCACCACCATGAAGTGCTCAAACAGCCTTGTCGGAATCCTTAACTTCGTCACCTTCCTCCTCTCCATCCCCATCCTCGGCGGCGGCATCTGGCTCGCACATAAAGCCACCACCGACTGCGAAAAATACCTCGAAAAACCCGTTATCGCACTCGGCGTCTTTCTCCTCGTCGTCTCTCTCGCTGGCTTCATCGGCGCTTGTTGCCGTGTCAATTGGCTCCTATGGGTTTACCTTGTTGTCATGTTTATACTCATTCTTATTCTCTTTTGCTTCACCATTTTTGCTTTCGTTGTTACCAACAAAGGTGCTGGTGAAGCTGTGAGTCAGCGTGGGTATAAGGAGTATAAGCTTGGTGATTACTCCAATTGGTTGCAGAAAAGGGTTGATAGTTCTAAGAATTGGAATCGTATTAGGAGTTGTTTAGTTGATGGTAAAGTTTGTCAGAAACTTTCTCAGGAAACTAATACTGTTGCTAATGACTTCTTCGCTAAACACTTGTCTCCAATCGAGGTATATTTTCTGAAATTTTAGATCTTAGTTTATGAATTTTGCTGCGTTTTGATCTGTTTCATTTCTGGGTTTTTGCTTTTGCACGATGGCCTGGGTTTTCTGTGTTTGATTTTAGTCTGTTTATATGTTTGAGTAATTTTCTGGGTTTTCGACTTTTTACATCACGTCTAGCAAATTTTTAACTGTGATTCTTCTTCAAGAAGTGGATTAAAAAAATTGGGTTAGGTGAATTCTTTTGCTGCCAAGATAATTTGCTTAAATTCGTAGTACTAGAATGAATCTATGAGATATTATTGTTGGGTTTTTTTAAGAGTTTTTGGTGATTTTTGGAGTTGTAAATTTGTTGATACTCCGTAATGAACAGAAAATTTTAATTAGTTTGTGTGTGAGCATATGATTTTGTTCTTTCATAAGTGGATTGTACAATTCTCTGATATTTTGATCTTCTGGAAAAGTTGACAGCCTTTTTGCAGATCCATGATCACCCTTTTCTTATGCTGTTGCTATCACTTTAGCTTTTCTTTTATTCCGTCTTTTTGAGTTTCATGTTTCTTGTTTTTTTTAATCAAAATCCAGAAATCAGCAAAAAAAAATCAGAATTATCAGGAATTTTATACAGTAATTTCATCCATTGTTGGGTTTTGGTTTAATTTTTGAGTGATTAGTCAGATTGAGTGGAACAGTTTGAAGGTTTCTTTGATTTTGCTGGGTCAATCATTGCATAATTAACTATGCTTTTTTGTTTGAATAGTCTTTTGCTTGTAGGACTTCTCATCTTTGTTAGATAAGTACTCGTATTATAATTGAACTTTAACTTTTCTTGGTCTTTCCTGTTGAATTGTTAAATGGAGAAACAGCCTGGGATATTTTTGCTTGAACACTAGAAGAAGCATCTAGCCGTTTATAAATTTCTTTTACGTAAATTGAGAGAGTATTTTAATTGCATTGTTAGTGGGTGTTAACTAGCTGAGCTGAGCTGAGCTAAACAAAATGGACCGTTAAATTGGATTTTGTTTCCTCGTGTATCAGTTTATGGCTAAAGTTTTCTACACCCTGCAAAATTCATTGACATTCATTTTTGCGTCATTGGGTGTCTGTGTTTACTCTGAATAACATAGTATTAACCTAACATACATACATGAATGAAGAGTTTTTGGAGATCAAGTAACGGTTTTTTAGGAGTCGGAAGCTAATTTTCACTTCACTATATCCCCTTTATAAATGTCATGCACTATGTGGCTTACATTTCTTCTAATCAAACTGTGTTTAAGATCCTGTTATTTTGTACTGAACAAATCTCCATTATCTTTATGCAGTCTGGTTGCTGTAAGCCTCCAGAAAACTGTCAATTCACATATGTGAGCCCAACCAACTGGAACACGAATGGAAACCGTACAACCACCAACCCCGACTGTAATGCCTGGAATAACGCCCCAAACACCCTCTGCTATGACTGCACTTCATGCAAAGCCGGGTTTCTGCAGAACCTCAAGCGTGACTGGAAACGGGTGGCTGTTATCAACATTGTTTTCCTCGTCTTCCTCATCATTGTATATTCAATTGGTTGCTGTGCTTTCCGCAACAACAGGTGGGACAGTAATAATGGATGGAAGCCATACCGCTGAAGATGATGATGACCTTTTAGATGTCTCAGTCATAGACAGTCCTTACTACTTCTTAGAATGCTGTTTGTACAGATGTTTGATCTGTTTTGATACTGGAGTATTCGGTTCATTTTTCCCCCCTCTGCATAGTTTGTTTCTGTCTATTATTTTCGTACACTAGTAGTAGTGTATATGGACTTATGGTTATATGTTAGTCATGCTGCTGTGTATATTCATCACTTTTGTTCTTGCGTAGTGCTCGGAAATAATGGCATTTTGTTATTTTGATGTCAGATTTGTGATTGCCATTGAAAACACCTAAGCTTCATTCTGTGTTTTCTTAGTTTCCTCTGTTCTTGCAACAGTTACTAATGTTCGTTACAACCACACTTGTAGCTAGGGGTGTTCAAAATCCGGTCACGAGAGGAAGATATACCAAATTCGGACTGGTTGATTCTGGTCTAATCGTCTGTCCTTTAAATTTTAGTTTTTGGGGTTTTTGATCCTGTTTGGTCCAAACCCCGAATTTTTGATCTGGACTGCTTGACCCGGTTTAAATTAAATAACACATTGTTCTTCTTTAGTG GAAGTTGTCAAATTCTTTTCCCTAAAATTACCTACCTTCACCAAACAACATTTTAACCCGCGGTCAACCCTTCCGCGTGATAACGCGTTTCCCAAAATCCGTTATAACTCCCCCCGTCTCTTCAAATTCTAACCTCTGCACCTTCTCCGAAACCGTCACCATCACCTTCAACTACATATATCCCCTTCAATCCCCACCCAATTTCCTCATTCTCTCTCCTACTCAACCGCAACCCCACCGCCGCCACAACAACCACCACCATGAAGTGCTCAAACAGCCTTGTCGGAATCCTTAACTTCGTCACCTTCCTCCTCTCCATCCCCATCCTCGGCGGCGGCATCTGGCTCGCACATAAAGCCACCACCGACTGCGAAAAATACCTCGAAAAACCCGTTATCGCACTCGGCGTCTTTCTCCTCGTCGTCTCTCTCGCTGGCTTCATCGGCGCTTGTTGCCGTGTCAATTGGCTCCTATGGGTTTACCTTGTTGTCATGTTTATACTCATTCTTATTCTCTTTTGCTTCACCATTTTTGCTTTCGTTGTTACCAACAAAGGTGCTGGTGAAGCTGTGAGTCAGCGTGGGTATAAGGAGTATAAGCTTGGTGATTACTCCAATTGGTTGCAGAAAAGGGTTGATAGTTCTAAGAATTGGAATCGTATTAGGAGTTGTTTAGTTGATGGTAAAGTTTGTCAGAAACTTTCTCAGGAAACTAATACTGTTGCTAATGACTTCTTCGCTAAACACTTGTCTCCAATCGAGTCTGGTTGCTGTAAGCCTCCAGAAAACTGTCAATTCACATATGTGAGCCCAACCAACTGGAACACGAATGGAAACCGTACAACCACCAACCCCGACTGTAATGCCTGGAATAACGCCCCAAACACCCTCTGCTATGACTGCACTTCATGCAAAGCCGGGTTTCTGCAGAACCTCAAGCGTGACTGGAAACGGGTGGCTGTTATCAACATTGTTTTCCTCGTCTTCCTCATCATTGTATATTCAATTGGTTGCTGTGCTTTCCGCAACAACAGGTGGGACAGTAATAATGGATGGAAGCCATACCGCTGAAGATGATGATGACCTTTTAGATGTCTCAGTCATAGACAGTCCTTACTACTTCTTAGAATGCTGTTTGTACAGATGTTTGATCTGTTTTGATACTGGAGTATTCGGTTCATTTTTCCCCCCTCTGCATAGTTTGTTTCTGTCTATTATTTTCGTACACTAGTAGTAGTGTATATGGACTTATGGTTATATGTTAGTCATGCTGCTGTGTATATTCATCACTTTTGTTCTTGCGTAGTGCTCGGAAATAATGGCATTTTGTTATTTTGATGTCAGATTTGTGATTGCCATTGAAAACACCTAAGCTTCATTCTGTGTTTTCTTAGTTTCCTCTGTTCTTGCAACAGTTACTAATGTTCGTTACAACCACACTTGTAGCTAGGGGTGTTCAAAATCCGGTCACGAGAGGAAGATATACCAAATTCGGACTGGTTGATTCTGGTCTAATCGTCTGTCCTTTAAATTTTAGTTTTTGGGGTTTTTGATCCTGTTTGGTCCAAACCCCGAATTTTTGATCTGGACTGCTTGACCCGGTTTAAATTAAATAACACATTGTTCTTCTTTAGTG ATGAAGTGCTCAAACAGCCTTGTCGGAATCCTTAACTTCGTCACCTTCCTCCTCTCCATCCCCATCCTCGGCGGCGGCATCTGGCTCGCACATAAAGCCACCACCGACTGCGAAAAATACCTCGAAAAACCCGTTATCGCACTCGGCGTCTTTCTCCTCGTCGTCTCTCTCGCTGGCTTCATCGGCGCTTGTTGCCGTGTCAATTGGCTCCTATGGGTTTACCTTGTTGTCATGTTTATACTCATTCTTATTCTCTTTTGCTTCACCATTTTTGCTTTCGTTGTTACCAACAAAGGTGCTGGTGAAGCTGTGAGTCAGCGTGGGTATAAGGAGTATAAGCTTGGTGATTACTCCAATTGGTTGCAGAAAAGGGTTGATAGTTCTAAGAATTGGAATCGTATTAGGAGTTGTTTAGTTGATGGTAAAGTTTGTCAGAAACTTTCTCAGGAAACTAATACTGTTGCTAATGACTTCTTCGCTAAACACTTGTCTCCAATCGAGTCTGGTTGCTGTAAGCCTCCAGAAAACTGTCAATTCACATATGTGAGCCCAACCAACTGGAACACGAATGGAAACCGTACAACCACCAACCCCGACTGTAATGCCTGGAATAACGCCCCAAACACCCTCTGCTATGACTGCACTTCATGCAAAGCCGGGTTTCTGCAGAACCTCAAGCGTGACTGGAAACGGGTGGCTGTTATCAACATTGTTTTCCTCGTCTTCCTCATCATTGTATATTCAATTGGTTGCTGTGCTTTCCGCAACAACAGGTGGGACAGTAATAATGGATGGAAGCCATACCGCTGA MKCSNSLVGILNFVTFLLSIPILGGGIWLAHKATTDCEKYLEKPVIALGVFLLVVSLAGFIGACCRVNWLLWVYLVVMFILILILFCFTIFAFVVTNKGAGEAVSQRGYKEYKLGDYSNWLQKRVDSSKNWNRIRSCLVDGKVCQKLSQETNTVANDFFAKHLSPIESGCCKPPENCQFTYVSPTNWNTNGNRTTTNPDCNAWNNAPNTLCYDCTSCKAGFLQNLKRDWKRVAVINIVFLVFLIIVYSIGCCAFRNNRWDSNNGWKPYR Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo14335.1 vs. NCBI nr
Match: gi|902217086|gb|KNA17614.1| (hypothetical protein SOVF_077780 [Spinacia oleracea]) HSP 1 Score: 562.8 bits (1449), Expect = 3.300e-157 Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 1
BLAST of Spo14335.1 vs. NCBI nr
Match: gi|731352735|ref|XP_010687692.1| (PREDICTED: tetraspanin-8-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 488.0 bits (1255), Expect = 1.000e-134 Identity = 229/269 (85.13%), Postives = 249/269 (92.57%), Query Frame = 1
BLAST of Spo14335.1 vs. NCBI nr
Match: gi|147858412|emb|CAN83511.1| (hypothetical protein VITISV_035079 [Vitis vinifera]) HSP 1 Score: 421.8 bits (1083), Expect = 9.100e-115 Identity = 197/269 (73.23%), Postives = 234/269 (86.99%), Query Frame = 1
BLAST of Spo14335.1 vs. NCBI nr
Match: gi|380719865|gb|AFD63133.1| (senescence-associated protein [Vitis quinquangularis]) HSP 1 Score: 419.1 bits (1076), Expect = 5.900e-114 Identity = 195/269 (72.49%), Postives = 234/269 (86.99%), Query Frame = 1
BLAST of Spo14335.1 vs. NCBI nr
Match: gi|225445732|ref|XP_002271684.1| (PREDICTED: tetraspanin-8 [Vitis vinifera]) HSP 1 Score: 417.5 bits (1072), Expect = 1.700e-113 Identity = 195/269 (72.49%), Postives = 232/269 (86.25%), Query Frame = 1
BLAST of Spo14335.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RF81_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_077780 PE=3 SV=1) HSP 1 Score: 562.8 bits (1449), Expect = 2.300e-157 Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 1
BLAST of Spo14335.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BQ22_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g192070 PE=3 SV=1) HSP 1 Score: 488.0 bits (1255), Expect = 7.200e-135 Identity = 229/269 (85.13%), Postives = 249/269 (92.57%), Query Frame = 1
BLAST of Spo14335.1 vs. UniProtKB/TrEMBL
Match: A5BRM6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035079 PE=3 SV=1) HSP 1 Score: 421.8 bits (1083), Expect = 6.400e-115 Identity = 197/269 (73.23%), Postives = 234/269 (86.99%), Query Frame = 1
BLAST of Spo14335.1 vs. UniProtKB/TrEMBL
Match: H9BYX6_9ROSI (Senescence-associated protein OS=Vitis quinquangularis PE=2 SV=1) HSP 1 Score: 419.1 bits (1076), Expect = 4.100e-114 Identity = 195/269 (72.49%), Postives = 234/269 (86.99%), Query Frame = 1
BLAST of Spo14335.1 vs. UniProtKB/TrEMBL
Match: F6HYN9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0037g01130 PE=3 SV=1) HSP 1 Score: 417.5 bits (1072), Expect = 1.200e-113 Identity = 195/269 (72.49%), Postives = 232/269 (86.25%), Query Frame = 1
BLAST of Spo14335.1 vs. ExPASy Swiss-Prot
Match: TET8_ARATH (Tetraspanin-8 OS=Arabidopsis thaliana GN=TET8 PE=2 SV=1) HSP 1 Score: 386.7 bits (992), Expect = 2.000e-106 Identity = 178/271 (65.68%), Postives = 219/271 (80.81%), Query Frame = 1
BLAST of Spo14335.1 vs. ExPASy Swiss-Prot
Match: TET7_ARATH (Tetraspanin-7 OS=Arabidopsis thaliana GN=TET7 PE=2 SV=1) HSP 1 Score: 345.5 bits (885), Expect = 5.200e-94 Identity = 159/259 (61.39%), Postives = 200/259 (77.22%), Query Frame = 1
BLAST of Spo14335.1 vs. ExPASy Swiss-Prot
Match: TET9_ARATH (Tetraspanin-9 OS=Arabidopsis thaliana GN=TET9 PE=2 SV=1) HSP 1 Score: 334.0 bits (855), Expect = 1.600e-90 Identity = 154/261 (59.00%), Postives = 201/261 (77.01%), Query Frame = 1
BLAST of Spo14335.1 vs. ExPASy Swiss-Prot
Match: TET3_ARATH (Tetraspanin-3 OS=Arabidopsis thaliana GN=TET3 PE=2 SV=1) HSP 1 Score: 279.6 bits (714), Expect = 3.500e-74 Identity = 136/260 (52.31%), Postives = 184/260 (70.77%), Query Frame = 1
BLAST of Spo14335.1 vs. ExPASy Swiss-Prot
Match: TET4_ARATH (Tetraspanin-4 OS=Arabidopsis thaliana GN=TET4 PE=3 SV=1) HSP 1 Score: 269.6 bits (688), Expect = 3.600e-71 Identity = 130/260 (50.00%), Postives = 183/260 (70.38%), Query Frame = 1
BLAST of Spo14335.1 vs. TAIR (Arabidopsis)
Match: AT2G23810.1 (tetraspanin8) HSP 1 Score: 386.7 bits (992), Expect = 1.100e-107 Identity = 178/271 (65.68%), Postives = 219/271 (80.81%), Query Frame = 1
BLAST of Spo14335.1 vs. TAIR (Arabidopsis)
Match: AT4G28050.1 (tetraspanin7) HSP 1 Score: 345.5 bits (885), Expect = 2.900e-95 Identity = 159/259 (61.39%), Postives = 200/259 (77.22%), Query Frame = 1
BLAST of Spo14335.1 vs. TAIR (Arabidopsis)
Match: AT4G30430.1 (tetraspanin9) HSP 1 Score: 334.0 bits (855), Expect = 8.800e-92 Identity = 154/261 (59.00%), Postives = 201/261 (77.01%), Query Frame = 1
BLAST of Spo14335.1 vs. TAIR (Arabidopsis)
Match: AT3G45600.1 (tetraspanin3) HSP 1 Score: 279.6 bits (714), Expect = 2.000e-75 Identity = 136/260 (52.31%), Postives = 184/260 (70.77%), Query Frame = 1
BLAST of Spo14335.1 vs. TAIR (Arabidopsis)
Match: AT5G60220.1 (tetraspanin4) HSP 1 Score: 269.6 bits (688), Expect = 2.000e-72 Identity = 130/260 (50.00%), Postives = 183/260 (70.38%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo14335.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo14335.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo14335.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo14335.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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