Spo14368 (gene) | SpinachBase

Overview


Name	Spo14368
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr3 : 12560443 .. 12565742 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCAAAGACGCAGTTGGCGAGATGCAAACTGTATTTTTGCGCTTTGGTAATAACCAAAGGTAATTTGGGAATTCTCAAACGTACCTTCGATCTTTTAACTTACTTCAATTATAATAATTTAATTTAAAAATAGAAAGAGATTTCAAATCATACGACTCATATATTAGTGTTTAAGTTGTGTTTGATTAAAAATAAATATTTTTAAAAGAAATAACCATGGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTAAGAGGCACATTTGTTGAATTATTAGAGCGCAACGTAGGAAATCTAATGGTTTTGGCCAATGAAAAATAAGATTTCTAATTTTTCCGCATCGGGAATTGGAGGCAGTCGTGAGACTATTCGTCCTCAAACTGGTGTAAAACTTCTCTTTTGAATTAAAAAAATGGACTGCCATGTAGATAATTAATTAGGTGTCACATAAATATTTTAATTAATTAATTGCTAATATATATAACTCCATCCAAGATAAAACACTCTAAAATTAAAAAATAAATCTAAAATAAAATTCATCCAAAATCAAAAATTAATCTAAAGTAAAAGTCAATTCAAAATCAAACACTAATCCAATATTAGAGTGCCACGTAGAAAATCTAATTGTTTCTGCCAATTAAAAATAAGATTTCGAAATTATTTTTGAATTAAAAAAGTCGATTGCCACGTAAATAAATAATTAGGTGCCACATATATAGAACAACAACAACAACAACAACAACAACAACAAAGCCTTAGTCCCAAAATGTTTTGGGGTCGGATAACATGAATCGTCGTAGGAGATCGTCATTGTCACCAATCAAACAAGAAAGGAGCGGGAAGTTAAAAAATAAACAGGGAAGAGGTGAGAAAGTGGAATTAATGAAAGTGAGATAAGAGGAAAATGTATATATGTATTATAGAAAAATATTATAAGGGATAATAAAAATAAGTAAACTTTAAAATAAATAAATAAGTAAAATAAGTACATTAAAAAAAATCAAGAAGTAAAAGTAAGAAGAGGCAAAATGGAAGTTGTATAAGTCAAATGAAGTCATCAATGTATATTCTCTCCCTCCACTCTGTCCTATCCAACGCCACATTTTTCTCAATCCCAAGAAGGCCCATATCGTCTCAATCACTATCCTCCAAGGTTTTCTAGGTCTTCCCCTACCCCTTGAAATTCTATCACTTTGCCACCCTTCTAACCTCCTAACCGGGGCATCACTTAATCTTTTGCTTACATGTCAAAACCATCTTAAACGATTTTCCATCATAATCGGTGCAATCCCTACTTTCTTCCTAATAATCTCATTCCTCAAATGATCCTTTCTTGTATGCCCACACATCCAACGTAACATGTGCATCTCCGCCACATTCATCTTTTGCACGTGTCAATGTTTAACTGCCTAGCATTCCGTGCCGTATAACAACGCTTGTTGAATTGTCGTGCGGTAAAATTTTCCCTTCAATCTTTGGGGCATGCCTGGATCACATAGGAACTCCGTGGCATTTTTCTACTTCAACCAACCTGCTTTGATTCTATGAGCCACATCACCATCCAATTTCCTATCCTTTTGGATAATATATCCTAAATAAAGGAACATTTCAGATCCTTATACAATTTTCACATCTAAGGTAATCGCCCCTGTCTCTCTATCTTGGACTCCACTAAACTTACACTCCATATATTCCGTCTTGTTTATACTCAGCCTAAAACCATGAGATTCCAAAGTTTGTCTCAACAACTCAAACTTATTTTCCACTCCTTCTTTTGTTTCATCAATCAACACAATATCATCTGCAAACATCATGCACCAGGTACCTTATTCTTGTACAAAGGGATGATAGTACCTTTTCTCCACTCTAATGGCATCCTATTACTTCCCCAAATCTTGTTGAAATGAATTGTTAACCATACAACCCCTCTCTCCCCCAAGCATCTCCAGACTTCGGTAGATATACCATCGGGCCCCACTGCCCTCTTGTGTCTCATCTTTTTTAATGTCATTTCGATTCTCTTTTGAATTCTTCGCATAAAGTCTAGGTTAACCGGCCATATCCCAATGGATATTTGTATCTCCAATATCGCACCCTTGATCCCCGTTGAACAAGTTATCAAATTAGAACCTCCATCTATCCTTGATTTCCTTTATCTCCCACCAAAACTTTTTGATCAACATCTTTCATACATTTAATCCTCCATCTATCCTAGATTTCCTTAATACTAATATTACACATATATATACAACTTAACCCAAAATTAAACAATTTAATAATTAAAAAATAAATCTAACATGAAATTCATTCCAAAATTAAAAACTAATCTAATCTACTATATAAAATATAAGTTGATATATTTAGGAGTTTTATTTTACAATTTAATAGAATTCGTATATCTGACGGGCTAAAATCTAGTATGTAGTACATTAACATATTTCTGTTAGTTCCGGAATATGATTAAGACTCTTATTGCAACCGTATAATGCTATAAATATTTATCAATGGAAATTACAGGAACACAAATTCTTATTTACAAGGGGTGTACAATAAATATTGTGCACCGGAGTAAAAGTTAACTCAAAATGCTTAAAAGTTAAGCTTATATATGTAAGAGTTATCTACTTTTTAGTGATAAATTTTTTTATTTTAATAAAACTTACTAGAATTTTGCCCGTGCGATGCACGGATTTTATTAAATTGTTAAGTTAAAATAAAACTTATATACTATACCAACTGCTATATTTTATATATTATATTACATTAATTTTTTTTATTTTGGATTGAATTTTATTTTAGATTTAATTTTTAAATATTAGAGTGTTTGTTCTTTTGATGAAGTTGTATATGCGTAATATTAGTAATTAATTAATAAAAATATCTATATGACACCTAATTATTTACCTACATGACACCCAACTTTTTAAATTCAAAAATAATTTTAACATCTTATTTTTCATAGGTCGGAACCATTAGATTTCTTACGTGGCGCTCTATTATTGGGTTAATGTTTGATTTTGGATTGAATTTTATTTTAGACTAGATTAGATCCCGTGCATGCACGATTTTGATCATTTTTTTTCACAAAATATTTAAATGAATATCTCCCAAACTACTGCATAGTTATAACATTTTTAACAAAATTGTTTAAATTTATTCATCTAATATGCATATTTAAAATGCTAATGTGGTAATTTGACTAAAATATTGAGTGATATATTTTCCATTATTAATATAGTGATTTGACTAAAATATTACCAATTTAGAATAATTATTATTACGTTGTATCTATTATTGCCATAATCTATAAACTAAATTTTGTTTCCATACATAAATCGTTTATAAAAAAAAGGTAGAGAATAAAAATAAAATAAAACAAATACATTTTATTTTAGGAAAGTGTTTTTTGGCGGGAAAAAATCGCACCAGGAATTGACATGTGTCATTCCTGGTGTCTCTTTTAGTATATAGTAATAGATAGACTAGACTTTAGCCCGTGCGATGCACGGTTTCTATTAAATTGTTACGTTAAAATAAAACTCCTACATATATCAACTGCTATATTTTATATATTAGATTAAATTAATCTTTTTTTTTTTGGATTGAATTTTATTTTAGATTTATTTTTTAATTATTATAGTGTTTGATGTTGGATGAAATTGTATATAAGAAATATTAATAATTATTTATTAAAAATATTTACGTGGCATCTAATTATTTATTTACGTGGCATTCGACTTTTTAATTCAAAAATAATTTTAAAGTCTTATTTTTCATTGGCCGATACCATTAGATTTCCTACGTGGCGCTATAATATTGGATTAATGTTTGATTTTGGATTGAATTTTATTTTAGATTAGTGTTTGATTTTGGATGAATTTTATTTTAGATTTATTTTTTTAATTACTAGAGCGTTTGATTTTGGATGGAATTGCATATATCAATAATTAATTAATTAATTTAAATATCTACGTGGCACCTAATTTATTATCTACGTGGCACTCGATTTTTTATAATTCAAAAATAAATTAGAAATCTTATTTTTCATTGGCCGAAACCATTAGTAATCCTAGGTGGCGCTCTAATAGTCCAGCAAATATGATTCCTTTATATATGTATATTAGATTAGTGTTTGATTTTGGATGAAATTTATTTTAGATTTATTTTTTAATTATTAGAGTGTTTGACTTTAGATGGAGTTGTATATATTTGTAATTAATTAATTAACATACCTACGTGGCACCTATTTAATTATCTATGTGGCACTCGATTTTTTTAATTCAAAAATAAATTAGAAATCTTATTTTTTATTGGTCGAAACCATTAGTAAAACTAGGTTAAAGTTACAAAAAAAATGGATAAAAATTATATTGGTGTACAATAAATTTATTGTACACGTTGTGCACGTAAGACCTTTTTGGTACAGGAATTTCTTAAAGAAAAAAAAATACTCGGATTCTTTCAAAGAAATTAAAATACTCGAATTTGTTAAAGAAAAAAAATAATCGAATTTCTTAAAGAAAAAAAATTAGTCGAATATTTTCTCAATCGAACATATTTTCTCTCTCCTCAGGCTCAGACTCAAACTCGAACTCGCAGCTGCTGTTATATCCTCCTCCTTCCTCCCGCCTCCCCCTCATAAAACCCTAACTACTCTCGTCCAACAGAACCAGCATCTTTTAGTTATATCACCACCTCCCCTCGGCGGCGCCTCTCCTTCTCTGCCGCTTCTATTCTTGGTATTGACGACAGTGTATAGCTTATTTTCCTCATCTATTTTATTCCTTTCGTATCGATTATATGGGTTTTTTCTGTTGATTTTATTTGTACTTATAGATCCAAACAGCGTTTAGTCAATTATTCTCATGCGGGGATGATGGATTTTGCCGATATGATGATTTCAAATTGTTCAATAGTCTCTGTTGGCATTGTTTTATGTCTAATTAGTTCATACCCAATTCATAATTGTACTGGGTAATCTGGATATTGGTAATCTGGGAATTGGTGAAAGCTTAAACTTGAAGAAAAACAATGTAATTGGATGTTTTATATGACTGTGGGCGTTGTGGTTGTGTTTTTCTTAATTTATCCATCTTCTCCATGAACACAAATCAATATTAAATGAGAGTGAGCTAGAATCTACCCTTTTTTCACTTGTTAACTCATAGCATATACGAAGTATGGCCTAGATAGGAACATAGTTAATGATTATTCCACTTATTTGGTCAATTATATCTGTTGTAGGCATTTTAG

mRNA sequence

ATGACCAAAGACGCAGTTGGCGAGATGCAAACTGTATTTTTGCGCTTTGGTAATAACCAAAGGCTCAGACTCAAACTCGAACTCGCAGCTGCTGTTATATCCTCCTCCTTCCTCCCGCCTCCCCCTCATAAAACCCTAACTACTCTCGTCCAACAGAACCAGCATCTTTTAGTTATATCACCACCTCCCCTCGGCGGCGCCTCTCCTTCTCTGCCGCTTCTATTCTTGGCATTTTAG

Coding sequence (CDS)

ATGACCAAAGACGCAGTTGGCGAGATGCAAACTGTATTTTTGCGCTTTGGTAATAACCAAAGGCTCAGACTCAAACTCGAACTCGCAGCTGCTGTTATATCCTCCTCCTTCCTCCCGCCTCCCCCTCATAAAACCCTAACTACTCTCGTCCAACAGAACCAGCATCTTTTAGTTATATCACCACCTCCCCTCGGCGGCGCCTCTCCTTCTCTGCCGCTTCTATTCTTGGCATTTTAG

Protein sequence

MTKDAVGEMQTVFLRFGNNQRLRLKLELAAAVISSSFLPPPPHKTLTTLVQQNQHLLVISPPPLGGASPSLPLLFLAF

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo14368.1	Spo14368.1	mRNA

Homology

The following BLAST results are available for this feature:

BLAST of Spo14368.1 vs. NCBI nr
BLAST of Spo14368.1 vs. UniProtKB/TrEMBL
BLAST of Spo14368.1 vs. ExPASy Swiss-Prot
BLAST of Spo14368.1 vs. TAIR (Arabidopsis)

BLAST of Spo14368.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo14368.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo14368.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo14368.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009308	amine metabolic process
biological_process	GO:0009853	photorespiration
biological_process	GO:0009627	systemic acquired resistance
biological_process	GO:0034976	response to endoplasmic reticulum stress
biological_process	GO:0006487	protein N-linked glycosylation
biological_process	GO:0015772	oligosaccharide transport
biological_process	GO:0006412	translation
biological_process	GO:0051788	response to misfolded protein
biological_process	GO:0080129	proteasome core complex assembly
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
biological_process	GO:0006354	DNA-templated transcription, elongation
biological_process	GO:0016192	vesicle-mediated transport
biological_process	GO:0006914	autophagy
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0016020	membrane
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0008250	oligosaccharyltransferase complex
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0044424	intracellular part
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005783	endoplasmic reticulum
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0048038	quinone binding
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0015157	oligosaccharide transmembrane transporter activity
molecular_function	GO:0005515	protein binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo17591	0.73	Barchart \| Table
Spo26185	0.71	Barchart \| Table
Spo21782	0.70	Barchart \| Table
Spo21366	0.68	Barchart \| Table
Spo16134	0.67	Barchart \| Table
Spo11248	0.67	Barchart \| Table
Spo13139	0.67	Barchart \| Table
Spo08157	0.67	Barchart \| Table
Spo25598	0.67	Barchart \| Table
Spo11333	0.66	Barchart \| Table
Spo09445	0.65	Barchart \| Table
Spo08861	0.65	Barchart \| Table