Spo14393 (gene) | SpinachBase

Overview


Name	Spo14393
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr1 : 35704861 .. 35705736 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGCCGTTGGATTGACGATCAACGGCTATGATGTAAAGATGGGAGTTGAGGAAAGAAACGGGTGGGTATAAATCAACAGTTTAAGAAGAGAGAGAACATTTCTTTTCTTCTCTCTTGTCTCTCTGTTTGCACCATTCAAGCTTTCTCTCTCCTCTTTTTCTCATTTGCACTTCAAATTCTTCAACTTTCTGAGTTTTTTTGAATTTTTTTACAAATTGTTGGTGAAAAATGCGAAAACAGAGTTTCAATTAAAAATGAGTAGTAGCTTTCATCTGTAGTTGACGATCTTGAATGAGTTTTCTTGTTGTTTCTGGAATTTGAAGGTTTGTAGTTTTTGTTTCAATGGAGGATTTCGGAATTGAAAGAGTTAAAACCTGTAATAATCATCAAAACGATTAAAATGTCTAGAATATTTGGACGATTGAACAATTGGAAAATTGGAAGTTTTGTTTGTTAATCAATTTTAGGCTAACGAATTTATAGCATTTCTTATTAAAATCTAACTAATTATGTGTAAATTTCTTCAACTTTTACAGCTGTTTGGCTCAAAATCAATCGATTTCTTCAGTTACGTGGTTGAATTCGGAGAGAAGAACAGGTAAATTTATACGAAAGAGTGAGAGAACAACTGTGATTTCTGTTCAAATTCTGGTTGAATTTTCATCAAATCATTGTTAACCTTGTGTACATCGAATCTGCGTTTCAGCAATTCGAAAGCTCAACCATACAGAAAGAACAATACTGAAGAAAAGGAAGAAGAAACTTCAATTACTGGTACCGATCCTCGAAGTCGTCGCTTCAATTTCATCTTCCACCATTTTTGTTCAAATCAGCTCAATCTGAAGCTTCATTTTCAAATTTGCAAGCTTTGA

mRNA sequence

ATGAGAGCCGTTGGATTGACGATCAACGGCTATGATGTAAAGATGGGAGTTGAGGAAAGAAACGGGTGGTTGACGATCTTGAATGAGTTTTCTTGTTGTTTCTGGAATTTGAAGCTGTTTGGCTCAAAATCAATCGATTTCTTCAGTTACGTGGTTGAATTCGGAGAGAAGAACAGCAATTCGAAAGCTCAACCATACAGAAAGAACAATACTGAAGAAAAGGAAGAAGAAACTTCAATTACTGGTACCGATCCTCGAAGTCGTCGCTTCAATTTCATCTTCCACCATTTTTGTTCAAATCAGCTCAATCTGAAGCTTCATTTTCAAATTTGCAAGCTTTGA

Coding sequence (CDS)

ATGAGAGCCGTTGGATTGACGATCAACGGCTATGATGTAAAGATGGGAGTTGAGGAAAGAAACGGGTGGTTGACGATCTTGAATGAGTTTTCTTGTTGTTTCTGGAATTTGAAGCTGTTTGGCTCAAAATCAATCGATTTCTTCAGTTACGTGGTTGAATTCGGAGAGAAGAACAGCAATTCGAAAGCTCAACCATACAGAAAGAACAATACTGAAGAAAAGGAAGAAGAAACTTCAATTACTGGTACCGATCCTCGAAGTCGTCGCTTCAATTTCATCTTCCACCATTTTTGTTCAAATCAGCTCAATCTGAAGCTTCATTTTCAAATTTGCAAGCTTTGA

Protein sequence

MRAVGLTINGYDVKMGVEERNGWLTILNEFSCCFWNLKLFGSKSIDFFSYVVEFGEKNSNSKAQPYRKNNTEEKEEETSITGTDPRSRRFNFIFHHFCSNQLNLKLHFQICKL

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo14393.1	Spo14393.1	mRNA

Homology

The following BLAST results are available for this feature:

BLAST of Spo14393.1 vs. NCBI nr
BLAST of Spo14393.1 vs. UniProtKB/TrEMBL
BLAST of Spo14393.1 vs. ExPASy Swiss-Prot
BLAST of Spo14393.1 vs. TAIR (Arabidopsis)

BLAST of Spo14393.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo14393.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo14393.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo14393.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009651	response to salt stress
biological_process	GO:0007030	Golgi organization
biological_process	GO:0007033	vacuole organization
biological_process	GO:0006623	protein targeting to vacuole
biological_process	GO:0006486	protein glycosylation
biological_process	GO:0048193	Golgi vesicle transport
biological_process	GO:0006119	oxidative phosphorylation
biological_process	GO:0000902	cell morphogenesis
biological_process	GO:0016049	cell growth
biological_process	GO:0006816	calcium ion transport
biological_process	GO:0015991	ATP hydrolysis coupled proton transport
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0000325	plant-type vacuole
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0000221	vacuolar proton-transporting V-type ATPase, V1 domain
molecular_function	GO:0008553	proton-exporting ATPase activity, phosphorylative mechanism
molecular_function	GO:0046961	proton-transporting ATPase activity, rotational mechanism
molecular_function	GO:0005515	protein binding
molecular_function	GO:0020037	heme binding
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0016491	oxidoreductase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo09220	0.71	Barchart \| Table
Spo16830	0.69	Barchart \| Table
Spo15234	0.68	Barchart \| Table
Spo05269	0.68	Barchart \| Table
Spo22436	0.68	Barchart \| Table
Spo14953	0.68	Barchart \| Table
Spo23856	0.67	Barchart \| Table
Spo18285	0.67	Barchart \| Table
Spo01196	0.67	Barchart \| Table
Spo18130	0.67	Barchart \| Table
Spo00190	0.66	Barchart \| Table
Spo02749	0.66	Barchart \| Table
Spo06022	0.66	Barchart \| Table
Spo11980	0.66	Barchart \| Table
Spo12423	0.66	Barchart \| Table
Spo16186	0.66	Barchart \| Table
Spo21422	0.66	Barchart \| Table
Spo26304	0.65	Barchart \| Table