Spo14399 (gene) | SpinachBase

Overview


Name	Spo14399
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Chlorophyll a-b binding protein 1, chloroplastic (Chlorophyll a-b protein 140) (CAB-140) (LHCII type I CAB-1) (Precursor)
Location	chr1 : 35817088 .. 35823338 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAGCTGTATTTTGAGTGCACCTGATGGTTCTCTGTATGTAATGTTGTATGTACTTGAATTGAAGAGAGGGTAATAATATCTCGGTTCTATTGTTCCGTGTCCATGTATTCAAAATTCTGAATGAACCACGTTTATATGATGTCAAAGGGTTATCATTCAAGTAATTTGGTACTGTCAGAAAATTGGAAACCAAGTCCTTGTTTACTTCCTCTTGTGTTTTATTTTGGCTTTTTTTTTTTTTTTTTTTTGGTTTTACTACGAGGAGTTCCCACCGCCTTCGGTGAGTGGACTAATCTTCCGCGGGAGTTTGCATGGATATCTCGATGGGCAGCATACCTCCCAATTGAGATTTCTTCCATTCCCAAGCCTCGAACCCGATATCTTGGTTAATGAGCAAGAGGATCTCAACCACTCATGCCAACCTCAATTGATATTTTGGCTTTATTATTGCTAGCTATTTTCTCATATACGGAGTACTCATTCCGCATTTGTGAAAATTATTGCATGTATGCTGGTATGCTTGGAACCAACATAAGTTGGTGGAGTTGGTGGGAAACTCACCTTGTGACTTGGAGGTCACAAGTTCGAGCCCCATCAACTGCGAAATGCTTGGGAGTGGCTCAAGCGATGACCTGCGGAGCTGGGCTGGTTAACCTGTGCTAGGTGCTGGTTCAGTTAGGGTCTCTTCTTCTTACCTATTAAAAAAAAAATGCTGGTATGCTTGGCTCTTAGGTGCGCCTATGCGCAAAATAGAAACTTGCTATACGAAATAGAAGTTTTTGTATACAGTTTTTTGTTTAAGGTACAAATGTACATCCTTAACTGGTGATATTTGATGATAAAAAATTTATACTCTCTTTGTCCCTTATTGTTTGCTTCATTTGACTTTAAACGATCTTTAACACACAAGTCAAACTGTAACTTTAATTAAAAATTTAAAAGGTCGATATGCTATAATTGTACATTGAATAAGACCTGACATGTTACTCTTTTATAGATTTATAAGAATTCATGATAACGCGTTTTAAAGTTTGACCCCAAAAAATACAATAGAGCAAACGTTAGGGGACGAAAGGAGTAGCAATAAACAATTATTACCATTAAAATTTAGGCTTACTAGCTAGGTCAAAATAAGTTTTTTTTTAATCATATTCTCTTACTAATCGTTATCAGATGATTTCTTACATTAATCTATTAACTATAGGGTACTTATTTACTAACTACCCTATTATTACAACTAATAATTAGAGCTAAACCAAGTTGTATGATTTTCTGTAGACTAAAATTCTTATACAAGTAACTATTTTACAAACTTAACAACTACAGATGGGAAGCATAGAATTACACAAATGAGTATTGAGTGGGACATAGATATTACTACTAGGCTACTAGCCATGCATATTGAAGGAAAGAGAACCACAAGTTTCTGATTATTCCAAGCAAAACAGAAGACATGAGATTCTATATGCCACATGGCAATCCCATTAACCAATTGGAAATCAAACTTATCTATCTTTCAAGATAAGCCCACTCCCCATTTCTTACAATTAAGGCAGCATCAAAAAGCCCATTTGGGTTGATATCATTTCTACCAAAACACACAGCCAAAAATTCACAACAAATATGTCTTCTGTGTGTGCTTCTTCAGCCACCACAGCTGTTTGTGCTTCTTCTGCCAGGCAAGTTCTTTCTTGATCCATTATCGTTTTTAAAAATAAAAAATAACATATAATCTTTTATGTATTACTTTGTTTCATATGGCATATAATAAGCTTAATTAGAGTTTTAAAAAGATTACAAAATGTCACACTTTCCAACATAAATACCAGATCATATTGTAAGGTTTGTTAAAAAAAATGAAACAGTTCACAGAAGAAAGGAAATGTATTGGGAGCAACAAGAGCATCATTCCTAGGAGGAAAGAAGTTGAGAGACAGCAGCAAATACAGAACACCCGTTTCCTCAAACTCCTTCTCTGTCTCCGCAGCTGCAGCTGAACCAGAGAGGCCTATTTGGTTCCCTGGTAGCACCCCTCCTTCTTGGCTAGATGGAAGGTCTGTAACTTTTTTTTTTTTTTTGTTTTTACTCTCTTCCGTTCACCCCTAATTATTTCATATTACGTATATGTTAGGGTAAAATAGTAAATTTTCATAGAGATCGTGCACGTTCTATCCCTTTGTTTTGAATCCGTATATATAATGGTACTCCATCTTTATTTTAAAATACAAACTAAAAAAGAGATACATTTCCTTAAACGGCCGTATTTTAAAAAGAGATAAGCTTTTCTACTAATATTTCTCTCTTTCTCGTGGTCGCTGCACTTACTCGCATCATCCTTATATTATACTCCGTAATAAATAATTCATCCACTATCCGACTTTCATCTTATTTTAATAAATTCAACTCACTCTCCTAAAACTAAATGTCGGTCAAAGTATATCTCTTTTTTAAAACTAGAAGTAAAATAATAATATTTCATAGAAATCATGCATATTTTATCCCCATTGTTTTGAATCCGTACATGTGATAGTAAAATAGTAAATTTTCTTAGAGATCGCGCATGTTTTATCCCCATTGTTTTGAATCCGTACAAGCCTCAGATCAACTACCACTATTAATAATGTTCGCCATAGTGAACCCAGCATTCTCTTACTAAGTTACTAGAGATATGCATATCTGAGGTGATCTTCCCCTTGATTTTGCATATCAGCTGAGGAGAAAATGTGAGAATGATCACTGTGGCACCCCAAATCATGACATAAAAATACCATTTTTACACCATTACTGTATATCCAGCACCAACACCAAATCCATCAAACAAGCGAACTCTTGAAACTTCAGTAACTTAACATTGTATAAAAATTCAAAATCGAAGCTTCGAAACAACAAGGCCATTAACATTATAACTTAACATTGTATTCATCTTTCACTAACAAATCAAAGCTCATCCTCCAACCTCAAATACTCACCAATATCACCTTGATGAATGACCACCATAGTTTGCGGGTCTGATTTACGAACATCCTTGGTCGATTTGGTGGCGATTCCGAAACCCAAAGGAACATCAGACATTGAATAAACAACAATACCATCACCACCATTTATATCTTCAGTAATCCTCCCTAAATGAGCCTTCAACACAGCATTCCCATACAAAAACGACATCTCTGAGGTCGGTTTAAGCCATACCTTGTGCTTCGCATTCGGGGCCAAGAGAGATAGAGCGTGAATTGTCAGATGGAAGTTCCCACTGTGGGTGAACTTCCCCACTTGTACACCCAGTGAAACCAGCAGCTCCTTCGAAACGTTTGTTGCGCGTTTCACGAGTGATTCACTAGCGTAGTACACACGATTCTTCTGGAGGCGGAAGCAGTACCGGCCTGGGAGCGGGTCTTGTGCGGGCCCTTCGTAGGATGGATTGTCGACGATGTTCTTGAGGTTGTTGCCGACGAACTTGAAGAGTTTCTCGAACACGATGGTGGTTTCTTGCTCGTCTAGGGTTCTCATATTCTAGTACGATGGTGGTTATTGAGGCGGCGTCAACGGCGGCGATTAGGGCTTTAGGGGATACCGGTTCACTTTAGTCAAATTTGGGAGGGTTTAGAGAGAGATCACGTTTATTTTTAGTCTCTACTTGATTTATTTTTATTGCTTTTGCCCCTTTGTATGTGTAAAGGTAAAATCTACCTATTACTATGGTGTAAAATTTTCCCGCCTAAAATATTTTTCAAAAATATATATATTTTTATTTTTTTATTATTCTCTACCTTTTTGTAAACTATCTTATACCCCCATAATGCAAAGTGCAGCTTCTGGGGCCAGTCTTTGTAATTGGTTGTCATTTTCATGATGATGGTTTTGACATTCTTGTTGGCTTCTTCGACTGCCCCATTAGTTTGCGGGCGATAAGGCGAAAAACGGTGATGTTGAATTTTGTACTCATTGAATAGATCTTCACACTCTCCTTGAAAATGGGTTCCCTGGTCGCTAATATGGAAAAAAAGTTAATAAATTATGGCAATAATAGATATCACGTGATAATAATTTTGCTAAATATTTTTTGATAATGTTTTAGTCAAATCGGTAGTATAGTAATGAAAAATATATTCACTCGATATGTCGATCAAATTAGCATATTACACATATATAATATGCATATTAGATTAATAAATTTAAATGAGTATGTTGATTTTTTTTTATAATTATGCAGTACTTTGGGGATATTTAGTTAAATATTTTATGAAAAATAATTATCATAATCCGTGCGTGCACGGGATCTAATCTAGTACTGTAGTACATAGAGATCACATTTGTTTTATCCCGCTTTTCTTTATTTTTGTGCAATTTTATTGTTTCTGATTAATTTCATATTATGTTTATGAAATTGCAGCCTTCCAGCAGACTTTGGCTTTGATCCTCTTGGATTTGGTAAGTCCACTTAAGACTTTTTTCCTTTACGAAATACTTTGACTTTTGACCCTATTCACAAATTTTAATTTGACTATCATTTATGATTTATAGGTAATAAAAAATATAGTCGTGTGGTATCTTGTTTGATTTGTCTCGATATATATACTTTCAAAATATCAACTTCTTATAATTTTTACGAATGCAAAAATAGAGATATTAATGTCTAAACATTTTCATTAGCAAGCGTGAAAAGTTAAATTGTCCCCATTATTTCGAAACGGAAGGAGTAAGTAACAAACACGCACGTGACATTAATTTTTGTGACGTACGGAGTATATTATTTAAAAACAACCCTCTAAGTCTATGATGGCTTGGATCCAAATACAACATCTTTAGTACCAACACAGAATATGTCAATACCAAAAACGAAAATGAAGTTAAAGTAGCTAACGAGTAGCTGAATAGGCTAGACTCATTATCATTTACTTGTATCAGTTATCACCCCTAGTTACAAAACTATGTAAAGGGTATCTAGTCAAATTGTACCATGTTTTAATTGAAATGTGGTGAAAGTGGAAGAATTAAGCAATTTTGTAGGCCAATGATTAGATACATTACCATTGTCAATATTAATTTCAATTTTCAAGAAAACGATGTTAAATAGATAATTCTATGTATGTAACTACGTACCATTACCATTATATATCCGGGTGTACCATGTATATACTATAAGGACACTCATTTTTTTGCTCATTTGCTTGTTTGATCAATCTCTTTGTAATGAACAAGTAGCAAAAAAAATTACGTTTGGATTTACGATACATATATCTGGATGGATGAACAATGGAAATTGTAGGTAAAAAATCTAATGATATGAGTTTTGTTATGGAATATGGACCCCAAAATCTGTAAATAATGTACATGACATTTAAACAGGTTCGGACCCAGAAACATTGAGATGGATGGTACAATCAGAAATAGTACATTGCAGGTGGGCAATGTTAGGAGCAGCTGGTATTTTCATCCCTGAATTCTTAACCAAACTTGGCATCCTAAACACCCCTTCTTGGTACACTGCTGGTGAACTCGACTACTTCACCGACACCACCACCCTTTTCGTTGTCGAGTTGGTTTTGATTGGTTGGGCCGAAGGACGTAGATGGGCTGACATCCTTAAACCCGGTTGCGTCAACACCGACCCAATCTTCCCCAACAACAAGCTCACCGGTACCGATGTGGGCTACCCTGGTGGGCTTTGGTTTGACCCATTGGGCTGGGGTTCGGGCTCGCCACAAAAGGTTAAGGAGTTGAGGACTAAGGAGATCAAGAATGGTAGGTTGGCTATGTTGGCTGTTATGGGAGCTTGGTTCCAACACATTTACACTGGGACTGGCCCAATTGATAACCTCTTTGCTCATCTTGCTGATCCTGGCCATGCCACTATTTTTTCTGTAAGTGTATTCATTTTCGCTTTTTATAACTTATCCGAACTTATTTTATCTGAAATAAGTCAAAATAACTTCTTTTTTTATATAATTTATCTGAACTTATTTTATCTGAAGTTATTAAATAAGTCGAACATACAGAATAGACGACCATTAATCACACTCGGATTATATTGATGCAAAATAATTGTCCTTTTTTCAGGCTTTTACCCCCAAGTGATGAGAGCAGAGGAAGAAGCTAGAAATGTTGGTTGTTCTAGGATAAGAGGAATGGGTTAATTTAAAAGGGTATTTGGAGGAAATTACGAGCAAATCAGCAGATCTTGAATGGTTGTTTAGTGGTTGCACCTACGAAATGTTGGAGCTTTGTACAAATGCCTCTTGGATTTAA

mRNA sequence

ATGAGGAGCTGTATTTTGAGTGCACCTGATGGTTCTCTCATCAAAAAGCCCATTTGGGTTGATATCATTTCTACCAAAACACACAGCCAAAAATTCACAACAAATATGTCTTCTGTGTGTGCTTCTTCAGCCACCACAGCTGTTTGTGCTTCTTCTGCCAGTTCACAGAAGAAAGGAAATGTATTGGGAGCAACAAGAGCATCATTCCTAGGAGGAAAGAAGTTGAGAGACAGCAGCAAATACAGAACACCCGTTTCCTCAAACTCCTTCTCTGTCTCCGCAGCTGCAGCTGAACCAGAGAGGCCTATTTGGTTCCCTGGTAGCACCCCTCCTTCTTGGCTAGATGGAAGCCTTCCAGCAGACTTTGGCTTTGATCCTCTTGGATTTGGTTCGGACCCAGAAACATTGAGATGGATGGTACAATCAGAAATAGTACATTGCAGGTGGGCAATGTTAGGAGCAGCTGGTATTTTCATCCCTGAATTCTTAACCAAACTTGGCATCCTAAACACCCCTTCTTGGTACACTGCTGGTGAACTCGACTACTTCACCGACACCACCACCCTTTTCGTTGTCGAGTTGGTTTTGATTGGTTGGGCCGAAGGACGTAGATGGGCTGACATCCTTAAACCCGGTTGCGTCAACACCGACCCAATCTTCCCCAACAACAAGCTCACCGGTACCGATGTGGGCTACCCTGGTGGGCTTTGGTTTGACCCATTGGGCTGGGGTTCGGGCTCGCCACAAAAGGTTAAGGAGTTGAGGACTAAGGAGATCAAGAATGGTAGGTTGGCTATGTTGGCTGTTATGGGAGCTTGGTTCCAACACATTTACACTGGGACTGGCCCAATTGATAACCTCTTTGCTCATCTTGCTGATCCTGGCCATGCCACTATTTTTTCTGTAAGCTTTTACCCCCAAGTGATGAGAGCAGAGGAAGAAGCTAGAAATGTTGGTTGTTCTAGGATAAGAGGAATGGCAGATCTTGAATGGTTGTTTAGTGGTTGCACCTACGAAATGTTGGAGCTTTGTACAAATGCCTCTTGGATTTAA

Coding sequence (CDS)

ATGAGGAGCTGTATTTTGAGTGCACCTGATGGTTCTCTCATCAAAAAGCCCATTTGGGTTGATATCATTTCTACCAAAACACACAGCCAAAAATTCACAACAAATATGTCTTCTGTGTGTGCTTCTTCAGCCACCACAGCTGTTTGTGCTTCTTCTGCCAGTTCACAGAAGAAAGGAAATGTATTGGGAGCAACAAGAGCATCATTCCTAGGAGGAAAGAAGTTGAGAGACAGCAGCAAATACAGAACACCCGTTTCCTCAAACTCCTTCTCTGTCTCCGCAGCTGCAGCTGAACCAGAGAGGCCTATTTGGTTCCCTGGTAGCACCCCTCCTTCTTGGCTAGATGGAAGCCTTCCAGCAGACTTTGGCTTTGATCCTCTTGGATTTGGTTCGGACCCAGAAACATTGAGATGGATGGTACAATCAGAAATAGTACATTGCAGGTGGGCAATGTTAGGAGCAGCTGGTATTTTCATCCCTGAATTCTTAACCAAACTTGGCATCCTAAACACCCCTTCTTGGTACACTGCTGGTGAACTCGACTACTTCACCGACACCACCACCCTTTTCGTTGTCGAGTTGGTTTTGATTGGTTGGGCCGAAGGACGTAGATGGGCTGACATCCTTAAACCCGGTTGCGTCAACACCGACCCAATCTTCCCCAACAACAAGCTCACCGGTACCGATGTGGGCTACCCTGGTGGGCTTTGGTTTGACCCATTGGGCTGGGGTTCGGGCTCGCCACAAAAGGTTAAGGAGTTGAGGACTAAGGAGATCAAGAATGGTAGGTTGGCTATGTTGGCTGTTATGGGAGCTTGGTTCCAACACATTTACACTGGGACTGGCCCAATTGATAACCTCTTTGCTCATCTTGCTGATCCTGGCCATGCCACTATTTTTTCTGTAAGCTTTTACCCCCAAGTGATGAGAGCAGAGGAAGAAGCTAGAAATGTTGGTTGTTCTAGGATAAGAGGAATGGCAGATCTTGAATGGTTGTTTAGTGGTTGCACCTACGAAATGTTGGAGCTTTGTACAAATGCCTCTTGGATTTAA

Protein sequence

MRSCILSAPDGSLIKKPIWVDIISTKTHSQKFTTNMSSVCASSATTAVCASSASSQKKGNVLGATRASFLGGKKLRDSSKYRTPVSSNSFSVSAAAAEPERPIWFPGSTPPSWLDGSLPADFGFDPLGFGSDPETLRWMVQSEIVHCRWAMLGAAGIFIPEFLTKLGILNTPSWYTAGELDYFTDTTTLFVVELVLIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFSVSFYPQVMRAEEEARNVGCSRIRGMADLEWLFSGCTYEMLELCTNASWI

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo14399.1	Spo14399.1	mRNA

Homology

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BLAST of Spo14399.1 vs. NCBI nr
Match: gi|902233476|gb|KNA23071.1| (hypothetical protein SOVF_028160 [Spinacia oleracea])

HSP 1 Score: 555.8 bits (1431), Expect = 5.300e-155
Identity = 268/272 (98.53%), Postives = 270/272 (99.26%), Query Frame = 1


		  
Query: 36  MSSVCASSATTAVCASSASSQKKGNVLGATRASFLGGKKLRDSSKYRTPVSSNSFSVSAA 95
           MSSVCASSATTAVCASSASSQKKGNVLGATRASFLGGKKLRDSSKYRTPVSSNSFSVSAA
Sbjct: 1   MSSVCASSATTAVCASSASSQKKGNVLGATRASFLGGKKLRDSSKYRTPVSSNSFSVSAA 60

Query: 96  AAEPERPIWFPGSTPPSWLDGSLPADFGFDPLGFGSDPETLRWMVQSEIVHCRWAMLGAA 155
           AAEPERPIWFPGSTPPSWLDGSLPADFGFDPLGFGSDPETLRWMVQSEIVHCRWAMLGAA
Sbjct: 61  AAEPERPIWFPGSTPPSWLDGSLPADFGFDPLGFGSDPETLRWMVQSEIVHCRWAMLGAA 120

Query: 156 GIFIPEFLTKLGILNTPSWYTAGELDYFTDTTTLFVVELVLIGWAEGRRWADILKPGCVN 215
           GIFIPEFLTKLGILNTPSWYTAGELDYFTDTTTLFVVELVLIGWAEGRRWADILKPGCVN
Sbjct: 121 GIFIPEFLTKLGILNTPSWYTAGELDYFTDTTTLFVVELVLIGWAEGRRWADILKPGCVN 180

Query: 216 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKVKELRTKEIKNGRLAMLAVMGAWFQ 275
           TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKVKELRTKEIKNGRLAMLAVMGAWFQ
Sbjct: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKVKELRTKEIKNGRLAMLAVMGAWFQ 240

Query: 276 HIYTGTGPIDNLFAHLADPGHATIFSVSFYPQ 308
           HIYTGTGPIDNLFAHLADPGHATIFS +F P+
Sbjct: 241 HIYTGTGPIDNLFAHLADPGHATIFS-AFTPK 271

[Close]

BLAST of Spo14399.1 vs. NCBI nr
Match: gi|731317473|ref|XP_010669087.1| (PREDICTED: chlorophyll a-b binding protein, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 517.7 bits (1332), Expect = 1.600e-143
Identity = 243/272 (89.34%), Postives = 261/272 (95.96%), Query Frame = 1


		  
Query: 36  MSSVCASSATTAVCASSASSQKKGNVLGATRASFLGGKKLRDSSKYRTPVSSNSFSVSAA 95
           M+S+CASSA+TAVCASS SSQKKG+VLGAT+ASFLGGKKLRD+ KY+ P +S S SVSAA
Sbjct: 1   MASLCASSASTAVCASSHSSQKKGSVLGATKASFLGGKKLRDT-KYKAPTASKSLSVSAA 60

Query: 96  AAEPERPIWFPGSTPPSWLDGSLPADFGFDPLGFGSDPETLRWMVQSEIVHCRWAMLGAA 155
           AAEPERPIWFPGSTPP WLDGSLP DFGFDPLGFGSDPETL+WMVQSE+VHCRWAMLGAA
Sbjct: 61  AAEPERPIWFPGSTPPPWLDGSLPGDFGFDPLGFGSDPETLKWMVQSELVHCRWAMLGAA 120

Query: 156 GIFIPEFLTKLGILNTPSWYTAGELDYFTDTTTLFVVELVLIGWAEGRRWADILKPGCVN 215
           GIFIPEFLTKLGILNTPSWYTAGEL+YFTDTTTLF++E++LIGWAEGRRWADILKPGCVN
Sbjct: 121 GIFIPEFLTKLGILNTPSWYTAGELEYFTDTTTLFIIEMILIGWAEGRRWADILKPGCVN 180

Query: 216 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKVKELRTKEIKNGRLAMLAVMGAWFQ 275
           TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQK KELRTKEIKNGRLAMLAVMGAWFQ
Sbjct: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKTKELRTKEIKNGRLAMLAVMGAWFQ 240

Query: 276 HIYTGTGPIDNLFAHLADPGHATIFSVSFYPQ 308
           HIYTGTGPIDNLFAHLADPGHATIF+ +F P+
Sbjct: 241 HIYTGTGPIDNLFAHLADPGHATIFA-AFTPK 270

[Close]

BLAST of Spo14399.1 vs. NCBI nr
Match: gi|763748100|gb|KJB15539.1| (hypothetical protein B456_002G183400 [Gossypium raimondii])

HSP 1 Score: 487.6 bits (1254), Expect = 1.800e-134
Identity = 227/273 (83.15%), Postives = 247/273 (90.48%), Query Frame = 1


		  
Query: 36  MSSVCASSATTAVCASSASSQKKGNVLGATRASFLGGKKLRDSSKYRTPVSSNSFSVSAA 95
           M+SVCASSA  AV  SS SSQK G+V+G T+ASFL GKKLR   KY  P +  +F V  A
Sbjct: 1   MASVCASSAIAAVAISSPSSQKTGSVVGTTKASFLTGKKLRSVRKYTKPAAGPTFPV-CA 60

Query: 96  AAEPERPIWFPGSTPPSWLDGSLPADFGFDPLGFGSDPETLRWMVQSEIVHCRWAMLGAA 155
           AA+P+RP+WFPGSTPP WLDGSLP DFGFDPLG GSDPETLRW VQ+E+VHCRWAMLGAA
Sbjct: 61  AADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAA 120

Query: 156 GIFIPEFLTKLGILNTPSWYTAGELDYFTDTTTLFVVELVLIGWAEGRRWADILKPGCVN 215
           GIFIPEFLTK+GILNTPSWY+AG  +YFTDTTTLF+VEL+ IGWAEGRRWADILKPGCVN
Sbjct: 121 GIFIPEFLTKIGILNTPSWYSAGTEEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVN 180

Query: 216 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKVKELRTKEIKNGRLAMLAVMGAWFQ 275
           TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP+K+KELRTKEIKNGRLAMLAVMGAWFQ
Sbjct: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQ 240

Query: 276 HIYTGTGPIDNLFAHLADPGHATIFSVSFYPQV 309
           HIYTGTGPIDNLFAHLADPGHATIF+VSF+PQV
Sbjct: 241 HIYTGTGPIDNLFAHLADPGHATIFAVSFHPQV 272

[Close]

BLAST of Spo14399.1 vs. NCBI nr
Match: gi|763748101|gb|KJB15540.1| (hypothetical protein B456_002G183400 [Gossypium raimondii])

HSP 1 Score: 479.6 bits (1233), Expect = 4.800e-132
Identity = 224/271 (82.66%), Postives = 243/271 (89.67%), Query Frame = 1


		  
Query: 36  MSSVCASSATTAVCASSASSQKKGNVLGATRASFLGGKKLRDSSKYRTPVSSNSFSVSAA 95
           M+SVCASSA  AV  SS SSQK G+V+G T+ASFL GKKLR   KY  P +  +F V  A
Sbjct: 1   MASVCASSAIAAVAISSPSSQKTGSVVGTTKASFLTGKKLRSVRKYTKPAAGPTFPV-CA 60

Query: 96  AAEPERPIWFPGSTPPSWLDGSLPADFGFDPLGFGSDPETLRWMVQSEIVHCRWAMLGAA 155
           AA+P+RP+WFPGSTPP WLDGSLP DFGFDPLG GSDPETLRW VQ+E+VHCRWAMLGAA
Sbjct: 61  AADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAA 120

Query: 156 GIFIPEFLTKLGILNTPSWYTAGELDYFTDTTTLFVVELVLIGWAEGRRWADILKPGCVN 215
           GIFIPEFLTK+GILNTPSWY+AG  +YFTDTTTLF+VEL+ IGWAEGRRWADILKPGCVN
Sbjct: 121 GIFIPEFLTKIGILNTPSWYSAGTEEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVN 180

Query: 216 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKVKELRTKEIKNGRLAMLAVMGAWFQ 275
           TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP+K+KELRTKEIKNGRLAMLAVMGAWFQ
Sbjct: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQ 240

Query: 276 HIYTGTGPIDNLFAHLADPGHATIFSVSFYP 307
           HIYTGTGPIDNLFAHLADPGHATIF+VS  P
Sbjct: 241 HIYTGTGPIDNLFAHLADPGHATIFAVSSTP 270

[Close]

BLAST of Spo14399.1 vs. NCBI nr
Match: gi|698480194|ref|XP_009787153.1| (PREDICTED: chlorophyll a-b binding protein, chloroplastic [Nicotiana sylvestris])

HSP 1 Score: 477.2 bits (1227), Expect = 2.400e-131
Identity = 223/272 (81.99%), Postives = 247/272 (90.81%), Query Frame = 1


		  
Query: 36  MSSVCASSATTAVCASSASSQKKGNVLGATRASFLGGKKLRDSSKYRTPVSSNSFSVSAA 95
           M+S CASSA  AV  SS SSQK G+++GAT+ASFLGGK+LR  SK+  P  S S +VSA 
Sbjct: 1   MASACASSAIAAVAFSSPSSQKNGSIVGATKASFLGGKRLR-VSKHVAPAGSRSVAVSAV 60

Query: 96  AAEPERPIWFPGSTPPSWLDGSLPADFGFDPLGFGSDPETLRWMVQSEIVHCRWAMLGAA 155
           AA+P+RP+WFPGSTPP WLDGSLP DFGFDPLG  SDPE+L+W  Q+E+VHCRWAMLGAA
Sbjct: 61  AADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLKWNQQAELVHCRWAMLGAA 120

Query: 156 GIFIPEFLTKLGILNTPSWYTAGELDYFTDTTTLFVVELVLIGWAEGRRWADILKPGCVN 215
           GIFIPEFLTK+GILNTPSWYTAGE +YFTDTTTLFV+ELVLIGWAEGRRWADI+KPGCVN
Sbjct: 121 GIFIPEFLTKIGILNTPSWYTAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVN 180

Query: 216 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKVKELRTKEIKNGRLAMLAVMGAWFQ 275
           TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP+K+KELRTKEIKNGRLAMLAVMGAWFQ
Sbjct: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQ 240

Query: 276 HIYTGTGPIDNLFAHLADPGHATIFSVSFYPQ 308
           HIYTGTGPIDNLFAHLADPGHATIF+ +F P+
Sbjct: 241 HIYTGTGPIDNLFAHLADPGHATIFA-AFSPK 270

[Close]

BLAST of Spo14399.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RU56_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea GN=SOVF_028160 PE=3 SV=1)

HSP 1 Score: 555.8 bits (1431), Expect = 3.700e-155
Identity = 268/272 (98.53%), Postives = 270/272 (99.26%), Query Frame = 1


		  
Query: 36  MSSVCASSATTAVCASSASSQKKGNVLGATRASFLGGKKLRDSSKYRTPVSSNSFSVSAA 95
           MSSVCASSATTAVCASSASSQKKGNVLGATRASFLGGKKLRDSSKYRTPVSSNSFSVSAA
Sbjct: 1   MSSVCASSATTAVCASSASSQKKGNVLGATRASFLGGKKLRDSSKYRTPVSSNSFSVSAA 60

Query: 96  AAEPERPIWFPGSTPPSWLDGSLPADFGFDPLGFGSDPETLRWMVQSEIVHCRWAMLGAA 155
           AAEPERPIWFPGSTPPSWLDGSLPADFGFDPLGFGSDPETLRWMVQSEIVHCRWAMLGAA
Sbjct: 61  AAEPERPIWFPGSTPPSWLDGSLPADFGFDPLGFGSDPETLRWMVQSEIVHCRWAMLGAA 120

Query: 156 GIFIPEFLTKLGILNTPSWYTAGELDYFTDTTTLFVVELVLIGWAEGRRWADILKPGCVN 215
           GIFIPEFLTKLGILNTPSWYTAGELDYFTDTTTLFVVELVLIGWAEGRRWADILKPGCVN
Sbjct: 121 GIFIPEFLTKLGILNTPSWYTAGELDYFTDTTTLFVVELVLIGWAEGRRWADILKPGCVN 180

Query: 216 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKVKELRTKEIKNGRLAMLAVMGAWFQ 275
           TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKVKELRTKEIKNGRLAMLAVMGAWFQ
Sbjct: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKVKELRTKEIKNGRLAMLAVMGAWFQ 240

Query: 276 HIYTGTGPIDNLFAHLADPGHATIFSVSFYPQ 308
           HIYTGTGPIDNLFAHLADPGHATIFS +F P+
Sbjct: 241 HIYTGTGPIDNLFAHLADPGHATIFS-AFTPK 271

[Close]

BLAST of Spo14399.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CWG9_BETVU (Chlorophyll a-b binding protein, chloroplastic OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g033010 PE=3 SV=1)

HSP 1 Score: 517.7 bits (1332), Expect = 1.100e-143
Identity = 243/272 (89.34%), Postives = 261/272 (95.96%), Query Frame = 1


		  
Query: 36  MSSVCASSATTAVCASSASSQKKGNVLGATRASFLGGKKLRDSSKYRTPVSSNSFSVSAA 95
           M+S+CASSA+TAVCASS SSQKKG+VLGAT+ASFLGGKKLRD+ KY+ P +S S SVSAA
Sbjct: 1   MASLCASSASTAVCASSHSSQKKGSVLGATKASFLGGKKLRDT-KYKAPTASKSLSVSAA 60

Query: 96  AAEPERPIWFPGSTPPSWLDGSLPADFGFDPLGFGSDPETLRWMVQSEIVHCRWAMLGAA 155
           AAEPERPIWFPGSTPP WLDGSLP DFGFDPLGFGSDPETL+WMVQSE+VHCRWAMLGAA
Sbjct: 61  AAEPERPIWFPGSTPPPWLDGSLPGDFGFDPLGFGSDPETLKWMVQSELVHCRWAMLGAA 120

Query: 156 GIFIPEFLTKLGILNTPSWYTAGELDYFTDTTTLFVVELVLIGWAEGRRWADILKPGCVN 215
           GIFIPEFLTKLGILNTPSWYTAGEL+YFTDTTTLF++E++LIGWAEGRRWADILKPGCVN
Sbjct: 121 GIFIPEFLTKLGILNTPSWYTAGELEYFTDTTTLFIIEMILIGWAEGRRWADILKPGCVN 180

Query: 216 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKVKELRTKEIKNGRLAMLAVMGAWFQ 275
           TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQK KELRTKEIKNGRLAMLAVMGAWFQ
Sbjct: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKTKELRTKEIKNGRLAMLAVMGAWFQ 240

Query: 276 HIYTGTGPIDNLFAHLADPGHATIFSVSFYPQ 308
           HIYTGTGPIDNLFAHLADPGHATIF+ +F P+
Sbjct: 241 HIYTGTGPIDNLFAHLADPGHATIFA-AFTPK 270

[Close]

BLAST of Spo14399.1 vs. UniProtKB/TrEMBL
Match: A0A0D2Q8H6_GOSRA (Chlorophyll a-b binding protein, chloroplastic OS=Gossypium raimondii GN=B456_002G183400 PE=3 SV=1)

HSP 1 Score: 487.6 bits (1254), Expect = 1.200e-134
Identity = 227/273 (83.15%), Postives = 247/273 (90.48%), Query Frame = 1


		  
Query: 36  MSSVCASSATTAVCASSASSQKKGNVLGATRASFLGGKKLRDSSKYRTPVSSNSFSVSAA 95
           M+SVCASSA  AV  SS SSQK G+V+G T+ASFL GKKLR   KY  P +  +F V  A
Sbjct: 1   MASVCASSAIAAVAISSPSSQKTGSVVGTTKASFLTGKKLRSVRKYTKPAAGPTFPV-CA 60

Query: 96  AAEPERPIWFPGSTPPSWLDGSLPADFGFDPLGFGSDPETLRWMVQSEIVHCRWAMLGAA 155
           AA+P+RP+WFPGSTPP WLDGSLP DFGFDPLG GSDPETLRW VQ+E+VHCRWAMLGAA
Sbjct: 61  AADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAA 120

Query: 156 GIFIPEFLTKLGILNTPSWYTAGELDYFTDTTTLFVVELVLIGWAEGRRWADILKPGCVN 215
           GIFIPEFLTK+GILNTPSWY+AG  +YFTDTTTLF+VEL+ IGWAEGRRWADILKPGCVN
Sbjct: 121 GIFIPEFLTKIGILNTPSWYSAGTEEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVN 180

Query: 216 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKVKELRTKEIKNGRLAMLAVMGAWFQ 275
           TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP+K+KELRTKEIKNGRLAMLAVMGAWFQ
Sbjct: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQ 240

Query: 276 HIYTGTGPIDNLFAHLADPGHATIFSVSFYPQV 309
           HIYTGTGPIDNLFAHLADPGHATIF+VSF+PQV
Sbjct: 241 HIYTGTGPIDNLFAHLADPGHATIFAVSFHPQV 272

[Close]

BLAST of Spo14399.1 vs. UniProtKB/TrEMBL
Match: A0A0D2R8N0_GOSRA (Chlorophyll a-b binding protein, chloroplastic OS=Gossypium raimondii GN=B456_002G183400 PE=3 SV=1)

HSP 1 Score: 479.6 bits (1233), Expect = 3.300e-132
Identity = 224/271 (82.66%), Postives = 243/271 (89.67%), Query Frame = 1


		  
Query: 36  MSSVCASSATTAVCASSASSQKKGNVLGATRASFLGGKKLRDSSKYRTPVSSNSFSVSAA 95
           M+SVCASSA  AV  SS SSQK G+V+G T+ASFL GKKLR   KY  P +  +F V  A
Sbjct: 1   MASVCASSAIAAVAISSPSSQKTGSVVGTTKASFLTGKKLRSVRKYTKPAAGPTFPV-CA 60

Query: 96  AAEPERPIWFPGSTPPSWLDGSLPADFGFDPLGFGSDPETLRWMVQSEIVHCRWAMLGAA 155
           AA+P+RP+WFPGSTPP WLDGSLP DFGFDPLG GSDPETLRW VQ+E+VHCRWAMLGAA
Sbjct: 61  AADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAA 120

Query: 156 GIFIPEFLTKLGILNTPSWYTAGELDYFTDTTTLFVVELVLIGWAEGRRWADILKPGCVN 215
           GIFIPEFLTK+GILNTPSWY+AG  +YFTDTTTLF+VEL+ IGWAEGRRWADILKPGCVN
Sbjct: 121 GIFIPEFLTKIGILNTPSWYSAGTEEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVN 180

Query: 216 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKVKELRTKEIKNGRLAMLAVMGAWFQ 275
           TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP+K+KELRTKEIKNGRLAMLAVMGAWFQ
Sbjct: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQ 240

Query: 276 HIYTGTGPIDNLFAHLADPGHATIFSVSFYP 307
           HIYTGTGPIDNLFAHLADPGHATIF+VS  P
Sbjct: 241 HIYTGTGPIDNLFAHLADPGHATIFAVSSTP 270

[Close]

BLAST of Spo14399.1 vs. UniProtKB/TrEMBL
Match: D7TAY3_VITVI (Chlorophyll a-b binding protein, chloroplastic OS=Vitis vinifera GN=VIT_01s0010g03620 PE=3 SV=1)

HSP 1 Score: 476.5 bits (1225), Expect = 2.800e-131
Identity = 225/273 (82.42%), Postives = 247/273 (90.48%), Query Frame = 1


		  
Query: 36  MSSVCASSATTAVCASSASSQKKGNVLGATRASFLGGKKLRDSSKYRTPVS-SNSFSVSA 95
           M+SVCASSA  AV   S SSQK G+V+GAT+ASFLGGK+L    K+  P + + SF+VSA
Sbjct: 1   MASVCASSAMAAVATISPSSQKTGSVVGATKASFLGGKRL-SLKKFTAPAAGTRSFTVSA 60

Query: 96  AAAEPERPIWFPGSTPPSWLDGSLPADFGFDPLGFGSDPETLRWMVQSEIVHCRWAMLGA 155
           AAA+P RP+WFPGSTPP WLDGSLP DFGFDPLG GSDPETL+WMVQSEIVHCRWAMLGA
Sbjct: 61  AAADPNRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPETLKWMVQSEIVHCRWAMLGA 120

Query: 156 AGIFIPEFLTKLGILNTPSWYTAGELDYFTDTTTLFVVELVLIGWAEGRRWADILKPGCV 215
           AGIFIPEFLTK+GILNTPSWYTAGEL+YFTD TTLF+VE++ IGWAEGRRWADI+KPGCV
Sbjct: 121 AGIFIPEFLTKIGILNTPSWYTAGELEYFTDKTTLFIVEMIFIGWAEGRRWADIIKPGCV 180

Query: 216 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKVKELRTKEIKNGRLAMLAVMGAWF 275
           NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP K+KELRTKEIKNGRLAMLAVMGAWF
Sbjct: 181 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPDKIKELRTKEIKNGRLAMLAVMGAWF 240

Query: 276 QHIYTGTGPIDNLFAHLADPGHATIFSVSFYPQ 308
           Q IYTGTGPIDNLFAHLADPGHATIF+ +F P+
Sbjct: 241 QAIYTGTGPIDNLFAHLADPGHATIFA-AFTPK 271

[Close]

BLAST of Spo14399.1 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 475.7 bits (1223), Expect = 4.300e-133
Identity = 222/272 (81.62%), Postives = 246/272 (90.44%), Query Frame = 1


		  
Query: 36  MSSVCASSATTAVCASSASSQKKGNVLGATRASFLGGKKLRDSSKYRTPVSSNSFSVSAA 95
           M+S CASS   AV  SS SSQK G+++GAT+ASFLGGK+LR  SK+  PV S S +VSA 
Sbjct: 1   MASACASSTIAAVAFSSPSSQKNGSIVGATKASFLGGKRLR-VSKFIAPVGSRSVAVSAV 60

Query: 96  AAEPERPIWFPGSTPPSWLDGSLPADFGFDPLGFGSDPETLRWMVQSEIVHCRWAMLGAA 155
           AA+P+RP+WFPGSTPP WLDGSLP DFGFDPLG GSDPE+L+W  Q+E+VH RWAMLGAA
Sbjct: 61  AADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAA 120

Query: 156 GIFIPEFLTKLGILNTPSWYTAGELDYFTDTTTLFVVELVLIGWAEGRRWADILKPGCVN 215
           GIFIPEFLTK+G+LNTPSWYTAGE +YFTDTTTLFV+ELVLIGWAEGRRWADI+KPGCVN
Sbjct: 121 GIFIPEFLTKIGVLNTPSWYTAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVN 180

Query: 216 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKVKELRTKEIKNGRLAMLAVMGAWFQ 275
           TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP K+KELRTKEIKNGRLAMLAVMGAWFQ
Sbjct: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQ 240

Query: 276 HIYTGTGPIDNLFAHLADPGHATIFSVSFYPQ 308
           HIYTGTGPIDNLFAHLADPGHATIF+ +F P+
Sbjct: 241 HIYTGTGPIDNLFAHLADPGHATIFA-AFSPK 270

[Close]

BLAST of Spo14399.1 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 462.2 bits (1188), Expect = 5.000e-129
Identity = 215/272 (79.04%), Postives = 241/272 (88.60%), Query Frame = 1


		  
Query: 36  MSSVCASSATTAVCASSASSQKKGNVLGATRASFLGGKKLRDSSKYRTPVSSNSFSVSAA 95
           M+S CASS   AV  SS SS++ G+++G T+ASFLGG++LR  SKY T  ++ S +    
Sbjct: 1   MASACASSTIAAVAFSSPSSRRNGSIVGTTKASFLGGRRLR-VSKYSTTPTARSATTVCV 60

Query: 96  AAEPERPIWFPGSTPPSWLDGSLPADFGFDPLGFGSDPETLRWMVQSEIVHCRWAMLGAA 155
           AA+P+RP+WFPGSTPP WLDGSLP DFGFDPLG  SDPE+LRW  Q+E+VHCRWAMLGAA
Sbjct: 61  AADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAA 120

Query: 156 GIFIPEFLTKLGILNTPSWYTAGELDYFTDTTTLFVVELVLIGWAEGRRWADILKPGCVN 215
           GIFIPE LTK+GILNTPSWYTAGE +YFTDTTTLF+VELVLIGWAEGRRWADI+KPGCVN
Sbjct: 121 GIFIPELLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELVLIGWAEGRRWADIIKPGCVN 180

Query: 216 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKVKELRTKEIKNGRLAMLAVMGAWFQ 275
           TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP K+KELRTKEIKNGRLAMLAVMGAWFQ
Sbjct: 181 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQ 240

Query: 276 HIYTGTGPIDNLFAHLADPGHATIFSVSFYPQ 308
           HIYTGTGPIDNLFAHLADPGHATIF+ +F P+
Sbjct: 241 HIYTGTGPIDNLFAHLADPGHATIFA-AFSPK 270

[Close]

BLAST of Spo14399.1 vs. ExPASy Swiss-Prot
Match: LHCA2_ARATH (Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=LHCA2 PE=1 SV=1)

HSP 1 Score: 437.2 bits (1123), Expect = 1.700e-121
Identity = 210/272 (77.21%), Postives = 228/272 (83.82%), Query Frame = 1


		  
Query: 37  SSVCASSATTAVCASSASSQKKGNVLGATRASFLGGKKLRDSSKYRTP-VSSNSFSVSAA 96
           SS+CASSA  A+ + S                FLGGKKLR   K   P VS    SV A 
Sbjct: 3   SSLCASSAIAAISSPS----------------FLGGKKLRLKKKLTVPAVSRPDASVRAV 62

Query: 97  AAEPERPIWFPGSTPPSWLDGSLPADFGFDPLGFGSDPETLRWMVQSEIVHCRWAMLGAA 156
           AA+P+RPIWFPGSTPP WLDGSLP DFGFDPLG  SDP++L+W VQ+EIVHCRWAMLGAA
Sbjct: 63  AADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAA 122

Query: 157 GIFIPEFLTKLGILNTPSWYTAGELDYFTDTTTLFVVELVLIGWAEGRRWADILKPGCVN 216
           GIFIPEFLTK+GILNTPSWYTAGE +YFTD TTLFVVEL+LIGWAEGRRWADI+KPG VN
Sbjct: 123 GIFIPEFLTKIGILNTPSWYTAGEQEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVN 182

Query: 217 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKVKELRTKEIKNGRLAMLAVMGAWFQ 276
           TDP+FPNNKLTGTDVGYPGGLWFDPLGWGSGSP K+KELRTKEIKNGRLAMLAVMGAWFQ
Sbjct: 183 TDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQ 242

Query: 277 HIYTGTGPIDNLFAHLADPGHATIFSVSFYPQ 308
           HIYTGTGPIDNLFAHLADPGHATIF+ +F P+
Sbjct: 243 HIYTGTGPIDNLFAHLADPGHATIFA-AFTPK 257

[Close]

BLAST of Spo14399.1 vs. ExPASy Swiss-Prot
Match: LHCA6_ARATH (Photosystem I chlorophyll a/b-binding protein 6, chloroplastic OS=Arabidopsis thaliana GN=LHCA6 PE=1 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 2.800e-79
Identity = 143/268 (53.36%), Postives = 181/268 (67.54%), Query Frame = 1


		  
Query: 36  MSSVCASSATTAVCASSASSQKKGNVLGATRASFLGGKKLRDSSKYRTPVSSNSFSVSAA 95
           ++S   S+ T +       +Q++ +V      S  GG+ +R+    R  V      VS+ 
Sbjct: 5   IASALTSTLTLSTSRVQNPTQRRPHVAST---SSTGGRLMRE----RLVVVRAGKEVSSV 64

Query: 96  AAE--PERPIWFPGSTPPSWLDGSLPADFGFDPLGFGSDPETLRWMVQSEIVHCRWAMLG 155
                P+RP+WFPGS+PP WLDGSLP DFGFDPLG GSDP+TL+W  Q+E++H RWAML 
Sbjct: 65  CEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLA 124

Query: 156 AAGIFIPEFLTKLGILNTPSWYTAGELDYFTDTTTLFVVELVLIGWAEGRRWADILKPGC 215
             GI IPE L +LG +   SWY AG  +YF D+TTLFV ++VL+GWAEGRRWAD++KPG 
Sbjct: 125 VTGIIIPECLERLGFIENFSWYDAGSREYFADSTTLFVAQMVLMGWAEGRRWADLIKPGS 184

Query: 216 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKVKELRTKEIKNGRLAMLAVMGAW 275
           V+ +P +P+      DVGYPGGLWFD + WG GSP+ V  LRTKEIKNGRLAMLA +G  
Sbjct: 185 VDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFC 244

Query: 276 FQHIYTGTGPIDNLFAHLADPGHATIFS 302
           FQ  YT   PI+NL AHLADPGH  +FS
Sbjct: 245 FQATYTSQDPIENLMAHLADPGHCNVFS 265

[Close]

BLAST of Spo14399.1 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 2.100e-58
Identity = 119/253 (47.04%), Postives = 151/253 (59.68%), Query Frame = 1


		  
Query: 51  SSASSQKKGNVLG--ATRASFLGGK--KLRDSSKYRTPVSSNSFSVSAAAAEPERPIWFP 110
           ++ ++Q    + G    ++ FLGG   KL     +R    S S S    A + E   W P
Sbjct: 2   ATVTTQASAAIFGPCGLKSRFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGE---WLP 61

Query: 111 GSTPPSWLDGSLPADFGFDPLGFGSDPETLRWMVQSEIVHCRWAMLGAAGIFIPEFLTKL 170
           G   P +L GSLP D GFDPLG   DPE LRW VQ+E+V+ RWAMLG AG+ +PE  T +
Sbjct: 62  GLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSI 121

Query: 171 GILNTPSWYTAGELDYFTDTTTLFVVELVLIGWAEGRRWADILKPGCVNTDPIFPNNKLT 230
           GI+N P WY AG+ +YF  ++TLFV+E +L  + E RRW DI  PG VN DPIF    L 
Sbjct: 122 GIINVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLP 181

Query: 231 GTDVGYPGGLWFDPLGWGSGSPQKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDN 290
             +VGYPGG+ F+PL +         E + KEI NGRLAMLA +G   QH  TG GP DN
Sbjct: 182 AGEVGYPGGI-FNPLNFA-----PTLEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDN 241

Query: 291 LFAHLADPGHATI 300
           L  H++DP H TI
Sbjct: 242 LLQHISDPWHNTI 245

[Close]

BLAST of Spo14399.1 vs. TAIR (Arabidopsis)
Match: AT3G61470.1 (photosystem I light harvesting complex gene 2)

HSP 1 Score: 437.2 bits (1123), Expect = 9.600e-123
Identity = 210/272 (77.21%), Postives = 228/272 (83.82%), Query Frame = 1


		  
Query: 37  SSVCASSATTAVCASSASSQKKGNVLGATRASFLGGKKLRDSSKYRTP-VSSNSFSVSAA 96
           SS+CASSA  A+ + S                FLGGKKLR   K   P VS    SV A 
Sbjct: 3   SSLCASSAIAAISSPS----------------FLGGKKLRLKKKLTVPAVSRPDASVRAV 62

Query: 97  AAEPERPIWFPGSTPPSWLDGSLPADFGFDPLGFGSDPETLRWMVQSEIVHCRWAMLGAA 156
           AA+P+RPIWFPGSTPP WLDGSLP DFGFDPLG  SDP++L+W VQ+EIVHCRWAMLGAA
Sbjct: 63  AADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAA 122

Query: 157 GIFIPEFLTKLGILNTPSWYTAGELDYFTDTTTLFVVELVLIGWAEGRRWADILKPGCVN 216
           GIFIPEFLTK+GILNTPSWYTAGE +YFTD TTLFVVEL+LIGWAEGRRWADI+KPG VN
Sbjct: 123 GIFIPEFLTKIGILNTPSWYTAGEQEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVN 182

Query: 217 TDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKVKELRTKEIKNGRLAMLAVMGAWFQ 276
           TDP+FPNNKLTGTDVGYPGGLWFDPLGWGSGSP K+KELRTKEIKNGRLAMLAVMGAWFQ
Sbjct: 183 TDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQ 242

Query: 277 HIYTGTGPIDNLFAHLADPGHATIFSVSFYPQ 308
           HIYTGTGPIDNLFAHLADPGHATIF+ +F P+
Sbjct: 243 HIYTGTGPIDNLFAHLADPGHATIFA-AFTPK 257

[Close]

BLAST of Spo14399.1 vs. TAIR (Arabidopsis)
Match: AT1G19150.1 (photosystem I light harvesting complex gene 6)

HSP 1 Score: 297.0 bits (759), Expect = 1.600e-80
Identity = 143/268 (53.36%), Postives = 181/268 (67.54%), Query Frame = 1


		  
Query: 36  MSSVCASSATTAVCASSASSQKKGNVLGATRASFLGGKKLRDSSKYRTPVSSNSFSVSAA 95
           ++S   S+ T +       +Q++ +V      S  GG+ +R+    R  V      VS+ 
Sbjct: 5   IASALTSTLTLSTSRVQNPTQRRPHVAST---SSTGGRLMRE----RLVVVRAGKEVSSV 64

Query: 96  AAE--PERPIWFPGSTPPSWLDGSLPADFGFDPLGFGSDPETLRWMVQSEIVHCRWAMLG 155
                P+RP+WFPGS+PP WLDGSLP DFGFDPLG GSDP+TL+W  Q+E++H RWAML 
Sbjct: 65  CEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLA 124

Query: 156 AAGIFIPEFLTKLGILNTPSWYTAGELDYFTDTTTLFVVELVLIGWAEGRRWADILKPGC 215
             GI IPE L +LG +   SWY AG  +YF D+TTLFV ++VL+GWAEGRRWAD++KPG 
Sbjct: 125 VTGIIIPECLERLGFIENFSWYDAGSREYFADSTTLFVAQMVLMGWAEGRRWADLIKPGS 184

Query: 216 VNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKVKELRTKEIKNGRLAMLAVMGAW 275
           V+ +P +P+      DVGYPGGLWFD + WG GSP+ V  LRTKEIKNGRLAMLA +G  
Sbjct: 185 VDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFC 244

Query: 276 FQHIYTGTGPIDNLFAHLADPGHATIFS 302
           FQ  YT   PI+NL AHLADPGH  +FS
Sbjct: 245 FQATYTSQDPIENLMAHLADPGHCNVFS 265

[Close]

BLAST of Spo14399.1 vs. TAIR (Arabidopsis)
Match: AT3G47470.1 (light-harvesting chlorophyll-protein complex I subunit A4)

HSP 1 Score: 223.0 bits (567), Expect = 2.900e-58
Identity = 110/235 (46.81%), Postives = 142/235 (60.43%), Query Frame = 1


		  
Query: 65  TRASFLGGKKLRDSSKYRTPVSSNSFSVSAAAAEPERPIWFPGSTPPSWLDGSLPADFGF 124
           ++  FL G   R +         +S   S+   E ++  W PG   P +L GSL  D GF
Sbjct: 18  SKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGF 77

Query: 125 DPLGFGSDPETLRWMVQSEIVHCRWAMLGAAGIFIPEFLTKLGILNTPSWYTAGELDYFT 184
           DPLG   DPE L+W VQ+E+V+ RWAMLG AG+ +PE  TK+GI+N P WY AG+  YF 
Sbjct: 78  DPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFA 137

Query: 185 DTTTLFVVELVLIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWG 244
            ++TLFV+E +L  + E RRW DI  PG VN DPIF    L   +VGYPGG+ F+PL + 
Sbjct: 138 SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGI-FNPLNFA 197

Query: 245 SGSPQKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATI 300
                  +E + KE+ NGRLAMLA +G   QH  TG GP +NL  HL+DP H TI
Sbjct: 198 -----PTQEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTI 246

[Close]

BLAST of Spo14399.1 vs. TAIR (Arabidopsis)
Match: AT5G28450.1 (Chlorophyll A-B binding family protein)

HSP 1 Score: 203.8 bits (517), Expect = 1.800e-52
Identity = 91/104 (87.50%), Postives = 98/104 (94.23%), Query Frame = 1


		  
Query: 204 RWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKVKELRTKEIKNGR 263
           R  DI+KPG VNTDP+FPNNKLTGTD+GYPGGLWFDPLGWGSGSP K+KELRTKEIKNGR
Sbjct: 71  RAPDIIKPGSVNTDPVFPNNKLTGTDIGYPGGLWFDPLGWGSGSPTKIKELRTKEIKNGR 130

Query: 264 LAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFSVSFYPQ 308
           LAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIF+ +F P+
Sbjct: 131 LAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFA-AFTPK 173

[Close]

BLAST of Spo14399.1 vs. TAIR (Arabidopsis)
Match: AT1G45474.1 (photosystem I light harvesting complex gene 5)

HSP 1 Score: 201.8 bits (512), Expect = 6.800e-52
Identity = 100/209 (47.85%), Postives = 129/209 (61.72%), Query Frame = 1


		  
Query: 100 ERPIWFPGSTPPSWLDGSLPADFGFDPLGFGSDPETLRWMVQSEIVHCRWAMLGAAGIFI 159
           ER  W PG  PP +LDG+L  D+GFDPLG G DPE+L+W VQ+E+VH R+AMLG AGI  
Sbjct: 45  ERATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILF 104

Query: 160 PEFLTKLGILNTPSWYTAGELDY-FTDTTTLFVVELVLIGWAEGRRWADILKPGCVNTDP 219
            + L   GI N P WY AG + + F  T TL VV+ +L+G+AE +R+ D + PG    + 
Sbjct: 105 TDLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEG 164

Query: 220 IF---PNNKLTGTDVGYPGGLWFDPLGWGSGSPQKVKELRTKEIKNGRLAMLAVMGAWFQ 279
            F       L G + GYPGG   +PLG      Q   + + KEIKNGRLAM+A++G + Q
Sbjct: 165 SFFFGLEAALEGLEPGYPGGPLLNPLGLAK-DVQNAHDWKLKEIKNGRLAMMAMLGFFVQ 224

Query: 280 HIYTGTGPIDNLFAHLADPGHATIFSVSF 305
              T TGPIDNL  HL++P H TI    F
Sbjct: 225 ASVTHTGPIDNLVEHLSNPWHKTIIQTLF 252

The following BLAST results are available for this feature:

BLAST of Spo14399.1 vs. NCBI nr
BLAST of Spo14399.1 vs. UniProtKB/TrEMBL
BLAST of Spo14399.1 vs. ExPASy Swiss-Prot
BLAST of Spo14399.1 vs. TAIR (Arabidopsis)

BLAST of Spo14399.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902233476\|gb\|KNA23071.1\|	5.3e-155	98.5	hypothetical protein SOVF_0281...	[more]
gi\|731317473\|ref\|XP_010669087.1\|	1.6e-143	89.3	PREDICTED: chlorophyll a-b bin...	[more]
gi\|763748100\|gb\|KJB15539.1\|	1.8e-134	83.1	hypothetical protein B456_002G...	[more]
gi\|763748101\|gb\|KJB15540.1\|	4.8e-132	82.6	hypothetical protein B456_002G...	[more]
gi\|698480194\|ref\|XP_009787153.1\|	2.4e-131	81.9	PREDICTED: chlorophyll a-b bin...	[more]

BLAST of Spo14399.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RU56_SPIOL	3.7e-155	98.5	Chlorophyll a-b binding protei...	[more]
A0A0J8CWG9_BETVU	1.1e-143	89.3	Chlorophyll a-b binding protei...	[more]
A0A0D2Q8H6_GOSRA	1.2e-134	83.1	Chlorophyll a-b binding protei...	[more]
A0A0D2R8N0_GOSRA	3.3e-132	82.6	Chlorophyll a-b binding protei...	[more]
D7TAY3_VITVI	2.8e-131	82.4	Chlorophyll a-b binding protei...	[more]

BLAST of Spo14399.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
CB12_PETHY	4.3e-133	81.6	Chlorophyll a-b binding protei...	[more]
CB12_SOLLC	5.0e-129	79.0	Chlorophyll a-b binding protei...	[more]
LHCA2_ARATH	1.7e-121	77.2	Photosystem I chlorophyll a/b-...	[more]
LHCA6_ARATH	2.8e-79	53.3	Photosystem I chlorophyll a/b-...	[more]
CB24_PEA	2.1e-58	47.0	Chlorophyll a-b binding protei...	[more]

BLAST of Spo14399.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT3G61470.1	9.6e-123	77.2	photosystem I light harvesting...	[more]
AT1G19150.1	1.6e-80	53.3	photosystem I light harvesting...	[more]
AT3G47470.1	2.9e-58	46.8	light-harvesting chlorophyll-p...	[more]
AT5G28450.1	1.8e-52	87.5	Chlorophyll A-B binding family...	[more]
AT1G45474.1	6.8e-52	47.8	photosystem I light harvesting...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 36..314 score: 5.1E
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 110..276 score: 1.4
IPR023329	Chlorophyll a/b binding protein domain	GENE3D	1.10.3460.10		coord: 102..301 score: 2.2
IPR023329	Chlorophyll a/b binding protein domain	unknown	SSF103511	Chlorophyll a-b binding protein	coord: 98..303 score: 8.11
None	No IPR available	PANTHER	PTHR21649:SF13	LHCA2 PROTEIN	coord: 36..314 score: 5.1E

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009765	photosynthesis, light harvesting
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0006139	nucleobase-containing compound metabolic process
biological_process	GO:0008152	metabolic process
biological_process	GO:0009987	cellular process
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0044085	cellular component biogenesis
biological_process	GO:0006796	phosphate-containing compound metabolic process
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0009657	plastid organization
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009295	nucleoid
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0016829	lyase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo11309	0.96	Barchart \| Table
Spo01116	0.74	Barchart \| Table
Spo07195	0.74	Barchart \| Table
Spo16925	0.73	Barchart \| Table
Spo02833	0.67	Barchart \| Table
Spo19861	0.67	Barchart \| Table
Spo23141	0.66	Barchart \| Table
Spo23225	0.66	Barchart \| Table