Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGAATTTGGTAATTGAAAAATGTTAGTCATGAGCTTTGGAATTAGCATGCATTTCAAATGTTAGTCATGCTCTCGAAATTTAGGAAATACACACTTCTCTAACTTTAGTGAAGAATGAAGATTTTACAGCATGTTCTATACATCCCATCTCGGTATAATTTTGTTGGATAGTTCGAGAGATTTGGTACCCACTTTGATTTTATTCCTCCATCCTTTGATAGACTGTGTCACACAGTGCACCTGATTTTGAAAGTTTTGGTTATTAAAATTGAGTTTTCTTGACTTTAGTTTTGTCTAAGAGTGTTAATAGGTTTTATCAAATATTTAGTATTGTTAAAGTTGATACTGAATAATTTTTAATTCTTCACCAGATGTCATTAGAGGCTCTACTACCACATATGGCTGCTCGAGTTTCTCCGAATTTGGTCAGTGGTCAGAGATTTTCTCCGGTTGGTAATTTCTACCCCTCTTCTCAGATACTCTTCAAATCTCCTGGACCATTTCAAATCAGAACACGGAGATTTCCATCCATTGCATGCCAAGGCAACCCTACTCCCTCAGATTCTTCTCCTGTAACGGTAGGTATGTCTCAAATTCTCAATGCTAAATGTGTAGCTGTGATAAATAAGTAAATAACATTAAACTCTGACCTCTTGTTCACTGTCCTGCTATCTGAACTTGAAGATGATGTTTGTGTTCCGCGAACTCAATAATTGTTTGAAATGCTATAGCGGATTTGAATTGGGACCAAGACAAAGGAACGTAGTTTTCAATGACTTATTTTGTAGATCTTCTTCTTGTGGAATTGATCAGTCGCTTTAAAATAACTTGTGGGGGGCAAATGGGTAATCTCACAAGTTGAGATTGCCAATTAATGATTTTAGTAAAATGCAATGCAGTTGGATGATGTTTGGTATTTTCCGCAGTGAGCAACATAATTCTTTAAGTCCTAGCAGCTTCAGGTCCTAAGGCATAATTTCTATGTTGATTAAATTTATAGAAATTGTCTTGTTTCCTACTCTAGTATTTCTTAGTGACTACATTTTCCCTGCTGCAGTGATCATACAGCCTGTTTTTTATTCAGAAGCCAAGGTTCACTATCGACTATCGTTTCTGTTTCTACACCTTTCTCCATAATTTTCACTAGCCAACCGATGTTCTGGTGAAGTGTCATGTTAAACCTATAGGCTATAGTGAAAAGGTTGACTTGATTTCAAGTCTTGATGGGCCAGAAGATGCACTTTTGTGATGGAAATAAGAGAATTACTTGTGGTCGGGCGGGGAGGGGGATTATTGAATTAAAGAAGGCGACAATATTTGATCAGAACAAAGGGCCTGAGTATACCCTAATTGTAAGATTTAGCTTTTAGGGCCTGAGTATTTAGGAAATTGTGATTTTCTGCGCAATCAGACAAGCACTTATATTGCAGGCAGGCTGCAGGCTGAGCTCACGTTTGTAGTAATAGTATAATCCATTCGCTCATAGCTAGTGTCAAATGGGTAATCTCATAAGTTGAGATTGCGAGTTAGATTTTAGTAAATGCAATGCAGTTGGATGATGTTTAATATATTCCGCACTGAGCAACATAATTCTTTAAGTCCTAGCAGCTTCAGGTCCTAAGGCATAATTTCTATGTGATTAAATTTTACAGAAATTCTCTTGTTTCCTACTTCTCTAGTGTTTCTAAGTGACTACATTTTCCCTGCTATGGTGGTCATACAACTATCGTTTCTGTTTCATATCACCTTTCTCCGTAATATTCATTAGCCAACCGATGTTTTGGTAAAGTGTCATAGTGAAAAGGTTTACTTGATTTGAAGTCTTGATGAGGCGGAAGATCAAGCACTTTTGTGATGGAAATAAGAGAACTTCACCCTTTTCCACATTTGGTAAAGTGTCCACTGTTTATTTGTTTCTTTCTAACTGTCCTCTTTTCTCCTAAATGTTTGTTGGTTTGTCCAGGAGAAGCCATCTGCCGAACCTAGTTCAGGTAATGAGTCTAATGACAAATCAGGCCAAGTTGTGACTTCCTCTTCTAATGCTGGCCTTCCTGAACTTCCAAACAAAGAAGTGAACAAGAGGATAGCTGTGTTTTCCACTGTTGCGGCATTAGGGCTTTTCTTATCAACACGTTTTGATTTTGGTGTTTCATTGAGAGACCTCACTGCCTTGGCACAGCCATATGAAGCGGTTTGTCTTTTCTGTCATGTTAATTCCTTAAGTTGGTCTTTGAGACTTTTTACACTTTGCTCACCACATGGGTTATACTAATGGTAAATTAATGTAGAAGCTAAAAGCAAGTCACTATAAATGTTTGTGATATCTCTGACAACATACGCCTATTACGTTCTGGAGCTGTGTCTCAGCTCTAGTATTTGTGTCGAATGCTCTGAGTTGAAAGAAAAAATGGGTATGACTATGGGCACAGGACACTTAGAATCTCTTGGCCTAACATGTATGACTAATACTTTCCTATTTTTGCATATGGTAAAAAAAATGAATCCTTGTCCCGTTTAGGACCCCAATTTTGAAAACCCACAACCATGTCTCCGTATCTCTTCCAGTTAAGTGCTTGTTTGGTTGACACAAATAAACATGGGAAGTAGAAGTTCCGAATAAGTGGAAGAAAATAGTTTGGTTAGTATTTCATAGGAAGTTCCACTTTGTAATTGCTTACTAAAGTCCCCCTATGTAAGTGAAAGTTTGCTTAGGAAACTTTATTTCTCATGATCAACCAAACAACATTTCACACTTGGAACTTGTAAGAAATGAAACTACATGAGAAAAATAACTTCCTAGGAAATATTGCTTTCCATTTTCAGCCAAATGACGACTAAGAAGTTTCAATATCAAGGTTAAAATCCCTTCTTTTGAGGCTTTGAAGCTGAAGCAAGTATTGGCTTTGGAACTATACTTGACATCTCTTGATTTTATTGCTAAATTGCTCCATGATAGTTCAAGGGTTACCCTTTATAATACACCTAAAGATTTCAAAGCTAGGTATAGCATGATGAAGGGGTTAAATTTTGAATAATGAAGAATAGTTCTGATACTTAAACTCGACTCCTTGAAAAGACCATCAATCAAGAGGATTTGACATCCTCTTGTGATCCTTGGTCCGGTCATCTAAAGGAAGAGGGGTCCCGTTAAGCATTAAACAAAATTATGCCATTACTGAACTTGAGTTTGATGCTTTGGAATATGAACATTAAAGCAAGTTCACGACAACATGAAAAAGTTTTAGGGGTCTGATAAATAATTGATGGCCCAGTCTTCCTGTTTCTGTCTTGTAGCCTCTAACTGTCCAACGCTTCTCCACCCCCATTCTGATTTGGGCATTTTTTTCGTGGAATATTCAAATTGAGATTAATTTCAGAATTTATGGTGTTGACTAAAAAATGCTACATTTTGTAGAACTCCGTAACTTGATGGGTTTTGGTCCTCTTATTCCCTTGGTTCCATGCCAAGCATTTTTCTGAGGTTAACAAATAACAACTGCATAAATGCATGCCTCGATATGTCATTTAGCCATCCTTTTCTTTCTTATGCTATGCTCATTTGAAGGTTCTATTAGTCCATGCTATTTTTGGGGCAATGACAATAATTGTTATATGTCTAGTGTATATGCATTTTGTCATCTCATCAATTGGATTCTTTTATTGTGGCACAGTAGTGCAGTTGCACATACTATTCAATACATGCTGTGCTAAAGGCGGATCAGGAAAAGATATTTCCTAGTCTGGACGTTTAGTTCGAGTATATACGTCTTCCACTTCTATTATGCAAGAGTGTTAAACAAAATGATGTTTGGCATGTTTCACACTTTCACCCTGTTCAATTTGGCTTTCAGTGGCTTATTCATTTTTGTGTTTGGTTATTGTTTCTGTACAGGCTTTGGCAAACGGAAAACCAACAGTTGTGGAATTCTATGCAGATTGGTGCGAAGTATGTAGGGAACTAGCACCAGATGTATACAAAGTTGAACAGCAGTTCAGGTGAAACTTTTTCTTTGTGCTGATTATTATGAATCACCATGATTGTTGCTGACTGCTGAGTATTTAAAATATGTTGGGATGAACTTACAATTGTAATGAATTCCCTCCCTCAGGGATCGAGTGAACTTTGTGATGCTGAATGTTGACAACACAAAGTGGGAGCAAGAGATAGACGAATTTGGTGTTGAAGGCATCCCACATTTTGCATTCTTGGACAAAGATGGTAATGAGGAAGGGAATGTGGTTGGCAGGCTACCTAGACAGTACTTGCTGGAAAATGTGGACGCTCTAGCACGTGGTAAGGATTCTATTCCCCACGCACGTGTTGTTGGCCAATTTTCAAATGCAGAGGCTAGAAGGATTCACCAAGTTGCTGATCCTAGAAGTCATGGATAAATTTTCCCATGATCAATTTTATGTCATATTGTACTATATCAGTGTACATCCATGAGGTACTGTTATACAAGTATTGTACATTATGTATCCGCTAATTCCATTCAATGGAAACTGTAAAAATTTGCAATAGCAAAGTAGTTATATCTTATTAACGCTCCCCCCTCTGCAGTAGTATATTTTGGCATCCTTTCATGTACTCATGTTACTTGATGTAAATGTTGAACTTATTCTAAACACCCAAAGTTTTCATGTTTACATGGCTCGCGAGTCGCGAGCAATCAAATGCTTTG ATGAATTTGATGTCATTAGAGGCTCTACTACCACATATGGCTGCTCGAGTTTCTCCGAATTTGGTCAGTGGTCAGAGATTTTCTCCGGTTGGTAATTTCTACCCCTCTTCTCAGATACTCTTCAAATCTCCTGGACCATTTCAAATCAGAACACGGAGATTTCCATCCATTGCATGCCAAGGCAACCCTACTCCCTCAGATTCTTCTCCTGTAACGGAGAAGCCATCTGCCGAACCTAGTTCAGGTAATGAGTCTAATGACAAATCAGGCCAAGTTGTGACTTCCTCTTCTAATGCTGGCCTTCCTGAACTTCCAAACAAAGAAGTGAACAAGAGGATAGCTGTGTTTTCCACTGTTGCGGCATTAGGGCTTTTCTTATCAACACGTTTTGATTTTGGTGTTTCATTGAGAGACCTCACTGCCTTGGCACAGCCATATGAAGCGGCTTTGGCAAACGGAAAACCAACAGTTGTGGAATTCTATGCAGATTGGTGCGAAGTATGTAGGGAACTAGCACCAGATGTATACAAAGTTGAACAGCAGTTCAGGGATCGAGTGAACTTTGTGATGCTGAATGTTGACAACACAAAGTGGGAGCAAGAGATAGACGAATTTGGTGTTGAAGGCATCCCACATTTTGCATTCTTGGACAAAGATGGTAATGAGGAAGGGAATGTGGTTGGCAGGCTACCTAGACAGTACTTGCTGGAAAATGTGGACGCTCTAGCACGTGGTAAGGATTCTATTCCCCACGCACGTGTTGTTGGCCAATTTTCAAATGCAGAGGCTAGAAGGATTCACCAAGTTGCTGATCCTAGAAGTCATGGATAAATTTTCCCATGATCAATTTTATGTCATATTGTACTATATCAGTGTACATCCATGAGGTACTGTTATACAAGTATTGTACATTATGTATCCGCTAATTCCATTCAATGGAAACTGTAAAAATTTGCAATAGCAAAGTAGTTATATCTTATTAACGCTCCCCCCTCTGCAGTAGTATATTTTGGCATCCTTTCATGTACTCATGTTACTTGATGTAAATGTTGAACTTATTCTAAACACCCAAAGTTTTCATGTTTACATGGCTCGCGAGTCGCGAGCAATCAAATGCTTTG ATGAATTTGATGTCATTAGAGGCTCTACTACCACATATGGCTGCTCGAGTTTCTCCGAATTTGGTCAGTGGTCAGAGATTTTCTCCGGTTGGTAATTTCTACCCCTCTTCTCAGATACTCTTCAAATCTCCTGGACCATTTCAAATCAGAACACGGAGATTTCCATCCATTGCATGCCAAGGCAACCCTACTCCCTCAGATTCTTCTCCTGTAACGGAGAAGCCATCTGCCGAACCTAGTTCAGGTAATGAGTCTAATGACAAATCAGGCCAAGTTGTGACTTCCTCTTCTAATGCTGGCCTTCCTGAACTTCCAAACAAAGAAGTGAACAAGAGGATAGCTGTGTTTTCCACTGTTGCGGCATTAGGGCTTTTCTTATCAACACGTTTTGATTTTGGTGTTTCATTGAGAGACCTCACTGCCTTGGCACAGCCATATGAAGCGGCTTTGGCAAACGGAAAACCAACAGTTGTGGAATTCTATGCAGATTGGTGCGAAGTATGTAGGGAACTAGCACCAGATGTATACAAAGTTGAACAGCAGTTCAGGGATCGAGTGAACTTTGTGATGCTGAATGTTGACAACACAAAGTGGGAGCAAGAGATAGACGAATTTGGTGTTGAAGGCATCCCACATTTTGCATTCTTGGACAAAGATGGTAATGAGGAAGGGAATGTGGTTGGCAGGCTACCTAGACAGTACTTGCTGGAAAATGTGGACGCTCTAGCACGTGGTAAGGATTCTATTCCCCACGCACGTGTTGTTGGCCAATTTTCAAATGCAGAGGCTAGAAGGATTCACCAAGTTGCTGATCCTAGAAGTCATGGATAA MNLMSLEALLPHMAARVSPNLVSGQRFSPVGNFYPSSQILFKSPGPFQIRTRRFPSIACQGNPTPSDSSPVTEKPSAEPSSGNESNDKSGQVVTSSSNAGLPELPNKEVNKRIAVFSTVAALGLFLSTRFDFGVSLRDLTALAQPYEAALANGKPTVVEFYADWCEVCRELAPDVYKVEQQFRDRVNFVMLNVDNTKWEQEIDEFGVEGIPHFAFLDKDGNEEGNVVGRLPRQYLLENVDALARGKDSIPHARVVGQFSNAEARRIHQVADPRSHG Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo14405.1 vs. NCBI nr
Match: gi|902228542|gb|KNA21152.1| (hypothetical protein SOVF_045940 [Spinacia oleracea]) HSP 1 Score: 543.1 bits (1398), Expect = 2.800e-151 Identity = 272/273 (99.63%), Postives = 272/273 (99.63%), Query Frame = 1
BLAST of Spo14405.1 vs. NCBI nr
Match: gi|731317535|ref|XP_010669243.1| (PREDICTED: thioredoxin-like protein HCF164, chloroplastic [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 424.1 bits (1089), Expect = 1.900e-115 Identity = 213/265 (80.38%), Postives = 236/265 (89.06%), Query Frame = 1
BLAST of Spo14405.1 vs. NCBI nr
Match: gi|823158300|ref|XP_012479013.1| (PREDICTED: thioredoxin-like protein HCF164, chloroplastic [Gossypium raimondii]) HSP 1 Score: 352.8 bits (904), Expect = 5.300e-94 Identity = 179/262 (68.32%), Postives = 211/262 (80.53%), Query Frame = 1
BLAST of Spo14405.1 vs. NCBI nr
Match: gi|1009144972|ref|XP_015890082.1| (PREDICTED: thioredoxin-like protein HCF164, chloroplastic [Ziziphus jujuba]) HSP 1 Score: 352.1 bits (902), Expect = 9.100e-94 Identity = 179/262 (68.32%), Postives = 210/262 (80.15%), Query Frame = 1
BLAST of Spo14405.1 vs. NCBI nr
Match: gi|659079309|ref|XP_008440188.1| (PREDICTED: thioredoxin-like protein HCF164, chloroplastic isoform X2 [Cucumis melo]) HSP 1 Score: 352.1 bits (902), Expect = 9.100e-94 Identity = 182/264 (68.94%), Postives = 207/264 (78.41%), Query Frame = 1
BLAST of Spo14405.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RQP9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_045940 PE=4 SV=1) HSP 1 Score: 543.1 bits (1398), Expect = 1.900e-151 Identity = 272/273 (99.63%), Postives = 272/273 (99.63%), Query Frame = 1
BLAST of Spo14405.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CWJ9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g033280 PE=4 SV=1) HSP 1 Score: 424.1 bits (1089), Expect = 1.300e-115 Identity = 213/265 (80.38%), Postives = 236/265 (89.06%), Query Frame = 1
BLAST of Spo14405.1 vs. UniProtKB/TrEMBL
Match: A0A0D2NDN3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G159700 PE=4 SV=1) HSP 1 Score: 352.8 bits (904), Expect = 3.700e-94 Identity = 179/262 (68.32%), Postives = 211/262 (80.53%), Query Frame = 1
BLAST of Spo14405.1 vs. UniProtKB/TrEMBL
Match: A0A0A0KG26_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G488380 PE=4 SV=1) HSP 1 Score: 348.6 bits (893), Expect = 7.000e-93 Identity = 173/238 (72.69%), Postives = 195/238 (81.93%), Query Frame = 1
BLAST of Spo14405.1 vs. UniProtKB/TrEMBL
Match: A0A059AZG5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01941 PE=4 SV=1) HSP 1 Score: 348.2 bits (892), Expect = 9.200e-93 Identity = 177/264 (67.05%), Postives = 209/264 (79.17%), Query Frame = 1
BLAST of Spo14405.1 vs. ExPASy Swiss-Prot
Match: TR164_ARATH (Thioredoxin-like protein HCF164, chloroplastic OS=Arabidopsis thaliana GN=HCF164 PE=1 SV=2) HSP 1 Score: 311.6 bits (797), Expect = 8.500e-84 Identity = 152/229 (66.38%), Postives = 190/229 (82.97%), Query Frame = 1
BLAST of Spo14405.1 vs. ExPASy Swiss-Prot
Match: TR164_ORYSJ (Thioredoxin-like protein HCF164, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0767500 PE=2 SV=1) HSP 1 Score: 307.8 bits (787), Expect = 1.200e-82 Identity = 155/243 (63.79%), Postives = 195/243 (80.25%), Query Frame = 1
BLAST of Spo14405.1 vs. ExPASy Swiss-Prot
Match: TXLA_SYNY3 (Thiol:disulfide interchange protein TxlA homolog OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=txlA PE=3 SV=1) HSP 1 Score: 131.3 bits (329), Expect = 1.600e-29 Identity = 71/174 (40.80%), Postives = 98/174 (56.32%), Query Frame = 1
BLAST of Spo14405.1 vs. ExPASy Swiss-Prot
Match: TXLA_SYNE7 (Thiol:disulfide interchange protein TxlA OS=Synechococcus elongatus (strain PCC 7942) GN=txlA PE=3 SV=1) HSP 1 Score: 122.1 bits (305), Expect = 9.600e-27 Identity = 61/145 (42.07%), Postives = 86/145 (59.31%), Query Frame = 1
BLAST of Spo14405.1 vs. ExPASy Swiss-Prot
Match: THIO1_SYNE7 (Thioredoxin-1 OS=Synechococcus elongatus (strain PCC 7942) GN=trxA PE=3 SV=2) HSP 1 Score: 61.6 bits (148), Expect = 1.500e-8 Identity = 31/94 (32.98%), Postives = 49/94 (52.13%), Query Frame = 1
BLAST of Spo14405.1 vs. TAIR (Arabidopsis)
Match: AT4G37200.1 (Thioredoxin superfamily protein) HSP 1 Score: 311.6 bits (797), Expect = 4.800e-85 Identity = 152/229 (66.38%), Postives = 190/229 (82.97%), Query Frame = 1
BLAST of Spo14405.1 vs. TAIR (Arabidopsis)
Match: AT2G47470.1 (thioredoxin family protein) HSP 1 Score: 55.8 bits (133), Expect = 4.800e-8 Identity = 29/79 (36.71%), Postives = 40/79 (50.63%), Query Frame = 1
BLAST of Spo14405.1 vs. TAIR (Arabidopsis)
Match: AT1G43560.1 (thioredoxin Y2) HSP 1 Score: 54.3 bits (129), Expect = 1.400e-7 Identity = 26/87 (29.89%), Postives = 47/87 (54.02%), Query Frame = 1
BLAST of Spo14405.1 vs. TAIR (Arabidopsis)
Match: AT5G06430.1 (Thioredoxin superfamily protein) HSP 1 Score: 53.9 bits (128), Expect = 1.800e-7 Identity = 27/99 (27.27%), Postives = 50/99 (50.51%), Query Frame = 1
BLAST of Spo14405.1 vs. TAIR (Arabidopsis)
Match: AT3G15360.1 (thioredoxin M-type 4) HSP 1 Score: 53.9 bits (128), Expect = 1.800e-7 Identity = 24/91 (26.37%), Postives = 49/91 (53.85%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo14405.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo14405.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo14405.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo14405.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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