Spo14429 (gene) | SpinachBase

Overview


Name	Spo14429
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	SpoScf_01138 : 203966 .. 206030 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTCCTCTCAAGCCACTGTGTGATACAGTCCGTAGAGTATATATGAGCACAGGGTAACCTTATCACCTCCACACCTTCTCCAATCTTTTCCAAACAAATCGAACATTCCCTCTCCTCCCCAAACTCTGTAACTCTCCTCTCTAAATGTCTTTGTTGTAGTATCTACTGATAGGTGCCTTTCAATTTGTAAATGTCTTTCAGATCATTGTTGCTTGCTGCTTGCTGCTTTGAGGCAGTTGTTTATTGCAAAGAATATAGGTGACTTAATTCATTCCTCAGTCTATATAATATGAAACATGTTTTAATCTAAGTGAGACCTTTCTGAATTAGTCCCTGAAGATCTTGTTTCATCCATTCTTTAGGTTGCGATGTCATTAATTTGGGGATGGGTAATGGTGCTTTCAGTGCTTGAAACGGTCAAGGCATTTGAGAAGGCAACAGGAAAGGTAATATTCTGTTTCATTTTTGTCTTAATTAGTCTCATAACTATACAATTCCTGTTATATGTGTTTTTATTTATATGATTTATGCAGAGTTACTTATTATGCGGTATGTTAGAATCAGAATGCATGATATCACTTGTTAATCAGTGTGCTTATGTTTGATTATACTTAATCAGTGTGCAAAGAAAAGGTTCCAGGTAAATAAACCGTTCATCCAAGAATACATTTTCAGGTGTTACTTTTTATTATGTTTAAGATGAAATTTTGATGAGCAACTGGAAAATTAATACACTGGAAAATGAACTTTGATTGATACACTGGAAAATTACAGAAATGAAGGTTAGATTCCAAGCATTCGAGTGGCTTGGAAGTGTTGGCACACTCCCAAGATAATACACTAAAAGTAAATTTAACTTCATAATCTTTAGTCTTATTGATTATTTAATCTGAGAGAGGGAAGGATGGACAAAGCGTTATTAATAATTAATAATGATCTAATATATTGAACTCAAACCCTGTGTTGTTTCTGTACATTTGAATCTTATGCATTCCGTCCCTTCATTTTTGGGCATATAATTTATTTTTATATTTTTTTTGGGAAAGAACTTAGTTCCTTAAATCATCGGATGAAATGATGAATACTCAAAGTCAATGTAGCATTGTTGTAGCATTGTTTTTGCCCCGTCTAGCTTCACTCAAACTTCTTTTAACATTTCTTTCTGTGTGCAGCCTGGACAGAGTTCAGAGCATCAACGTCAGATGACGTTGCTAGAATCTGGTACCCCAGGAGTCCCTCCTTTTGGTGCTTTGAGTTCTGGCTTCACTAATCACTAACCAGACTGCTTCTCCACCTATTCAAGCATATGCTGGCCACCACCACCAACAACATCCGATGCCACAGCATTGGTAATCCTCATCATTCGCATTTTCCAAGACAGAATCACACTGCCACTCCAGAGCAACAAGCCTTTATGCGTCTTCAAAGAGACCGGAAGATTCAGCAAAGACTGTTGCAGCGGCAGCAACAACAACAACAGCAAGAGCTTCCCGCATTAGGTGCATTGATGACACATGCCCAAACTCCTTCCCAGCTACCTGCATCATCTTCTGTGCAGAATGCTTACCAGAATTACCAACTGCTTCTCAGCCGAATTCATCCTAATTTCTCTCAGGCTCCCATTTGATGTAATTTCTTCTTCTTTTTCTTCCTCTCTTTTTTTTTCCTATTAATTTTTTTTTATAATGACAGAGGCTTTCGAGAATTTCGAGCACATGTTTTCTTTTGTGTAGTTTGTGTTTGCTTGCTTGATGGTTTTACTTGATGATCCTCTTTATCGGTAGAGTGTTTAATGGGAAAAAGAGAGCTAGAAGAGTAGATATGTTACTCTGCTAATAAAGTGTGACTGATATGTTGCGATCTTGAGAGGACAATCCCAATCTTGCGATCTTGAGATTAGACTTCGTTTGATAGGTGATTACCTGAGCGTTGCCTTTATAGCCTCCTTTTACGGTGCGACGGTTGGTCAACGTCAAAGTAAGCAGTTCTCAAACAAGTAATCTCAAATCACTCAGGTATTGAGGATTTAGTGTCTAATAATTTTAATGAAATTTACTTATGA

mRNA sequence

ATGAGTCCTCTCAAGCCACTGTGTGATACAGTCCGTAGAGTTGCGATGTCATTAATTTGGGGATGGGTAATGGTGCTTTCAGTGCTTGAAACGGTCAAGGCATTTGAGAAGGCAACAGGAAAGTGTGCAAAGAAAAGGTTCCAGCCTGGACAGAGTTCAGAGCATCAACGTCAGATGACGTTGCTAGAATCTGGTACCCCAGGAGTCCCTCCTTTTGGTGCTTTGAGTTCTGGCTTCACTAATCACTAACCAGACTGCTTCTCCACCTATTCAAGCATATGCTGGCCACCACCACCAACAACATCCGATGCCACAGCATTGGTAATCCTCATCATTCGCATTTTCCAAGACAGAATCACACTGCCACTCCAGAGCAACAAGCCTTTATGCGTCTTCAAAGAGACCGGAAGATTCAGCAAAGACTGTTGCAGCGGCAGCAACAACAACAACAGCAAGAGCTTCCCGCATTAGGTGCATTGATGACACATGCCCAAACTCCTTCCCAGCTACCTGCATCATCTTCTGTGCAGAATGCTTACCAGAATTACCAACTGCTTCTCAGCCGAATTCATCCTAATTTCTCTCAGGCTCCCATTTGATGTAATTTCTTCTTCTTTTTCTTCCTCTCTTTTTTTTTCCTATTAATTTTTTTTTATAATGACAGAGGCTTTCGAGAATTTCGAGCACATGTTTTCTTTTGTGTAGTTTGTGTTTGCTTGCTTGATGGTTTTACTTGATGATCCTCTTTATCGGTAGAGTGTTTAATGGGAAAAAGAGAGCTAGAAGAGTAGATATGTTACTCTGCTAATAAAGTGTGACTGATATGTTGCGATCTTGAGAGGACAATCCCAATCTTGCGATCTTGAGATTAGACTTCGTTTGATAGGTGATTACCTGAGCGTTGCCTTTATAGCCTCCTTTTACGGTGCGACGGTTGGTCAACGTCAAAGTAAGCAGTTCTCAAACAAGTAATCTCAAATCACTCAGGTATTGAGGATTTAGTGTCTAATAATTTTAATGAAATTTACTTATGA

Coding sequence (CDS)

ATGAGTCCTCTCAAGCCACTGTGTGATACAGTCCGTAGAGTTGCGATGTCATTAATTTGGGGATGGGTAATGGTGCTTTCAGTGCTTGAAACGGTCAAGGCATTTGAGAAGGCAACAGGAAAGTGTGCAAAGAAAAGGTTCCAGCCTGGACAGAGTTCAGAGCATCAACGTCAGATGACGTTGCTAGAATCTGGTACCCCAGGAGTCCCTCCTTTTGGTGCTTTGAGTTCTGGCTTCACTAATCACTAA

Protein sequence

MSPLKPLCDTVRRVAMSLIWGWVMVLSVLETVKAFEKATGKCAKKRFQPGQSSEHQRQMTLLESGTPGVPPFGALSSGFTNH

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo14429.1	Spo14429.1	mRNA

Homology

[Close]

BLAST of Spo14429.1 vs. NCBI nr
Match: gi|902210851|gb|KNA16554.1| (hypothetical protein SOVF_088110 [Spinacia oleracea])

HSP 1 Score: 67.8 bits (164), Expect = 1.000e-8
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 1

		  
Query: 48   QPGQSSEHQRQMTLLESGTPGVPPFGALSSGFTN 82
            +PGQSSEHQRQMTL ESG+PGVPPFGALSSGFTN
Sbjct: 1399 RPGQSSEHQRQMTLPESGSPGVPPFGALSSGFTN 1432

[Close]

BLAST of Spo14429.1 vs. NCBI nr
Match: gi|731347499|ref|XP_010685017.1| (PREDICTED: uncharacterized protein LOC104899514 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 60.8 bits (146), Expect = 1.200e-6
Identity = 26/34 (76.47%), Postives = 31/34 (91.18%), Query Frame = 1

		  
Query: 48   QPGQSSEHQRQMTLLESGTPGVPPFGALSSGFTN 82
            +PGQ+S+HQRQM L ES +PGVPPFGA+SSGFTN
Sbjct: 1417 RPGQNSDHQRQMMLAESSSPGVPPFGAMSSGFTN 1450

[Close]

BLAST of Spo14429.1 vs. NCBI nr
Match: gi|870853759|gb|KMT05626.1| (hypothetical protein BVRB_7g167650 isoform B [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 60.8 bits (146), Expect = 1.200e-6
Identity = 26/34 (76.47%), Postives = 31/34 (91.18%), Query Frame = 1

		  
Query: 48   QPGQSSEHQRQMTLLESGTPGVPPFGALSSGFTN 82
            +PGQ+S+HQRQM L ES +PGVPPFGA+SSGFTN
Sbjct: 1414 RPGQNSDHQRQMMLAESSSPGVPPFGAMSSGFTN 1447

[Close]

BLAST of Spo14429.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RC07_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_088110 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.100e-9
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 1

		  
Query: 48   QPGQSSEHQRQMTLLESGTPGVPPFGALSSGFTN 82
            +PGQSSEHQRQMTL ESG+PGVPPFGALSSGFTN
Sbjct: 1399 RPGQSSEHQRQMTLPESGSPGVPPFGALSSGFTN 1432

[Close]

BLAST of Spo14429.1 vs. UniProtKB/TrEMBL
Match: A0A0J8ERC4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g167650 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.700e-7
Identity = 26/34 (76.47%), Postives = 31/34 (91.18%), Query Frame = 1

		  
Query: 48   QPGQSSEHQRQMTLLESGTPGVPPFGALSSGFTN 82
            +PGQ+S+HQRQM L ES +PGVPPFGA+SSGFTN
Sbjct: 1414 RPGQNSDHQRQMMLAESSSPGVPPFGAMSSGFTN 1447

[Close]

BLAST of Spo14429.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BVJ6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g167650 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.700e-7
Identity = 26/34 (76.47%), Postives = 31/34 (91.18%), Query Frame = 1

		  
Query: 48   QPGQSSEHQRQMTLLESGTPGVPPFGALSSGFTN 82
            +PGQ+S+HQRQM L ES +PGVPPFGA+SSGFTN
Sbjct: 1417 RPGQNSDHQRQMMLAESSSPGVPPFGAMSSGFTN 1450

The following BLAST results are available for this feature:

BLAST of Spo14429.1 vs. NCBI nr
BLAST of Spo14429.1 vs. UniProtKB/TrEMBL
BLAST of Spo14429.1 vs. ExPASy Swiss-Prot
BLAST of Spo14429.1 vs. TAIR (Arabidopsis)

BLAST of Spo14429.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 3

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902210851\|gb\|KNA16554.1\|	1.0e-8	91.1	hypothetical protein SOVF_0881...	[more]
gi\|731347499\|ref\|XP_010685017.1\|	1.2e-6	76.4	PREDICTED: uncharacterized pro...	[more]
gi\|870853759\|gb\|KMT05626.1\|	1.2e-6	76.4	hypothetical protein BVRB_7g16...	[more]

BLAST of Spo14429.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 3

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9RC07_SPIOL	7.1e-9	91.1	Uncharacterized protein OS=Spi...	[more]
A0A0J8ERC4_BETVU	8.7e-7	76.4	Uncharacterized protein OS=Bet...	[more]
A0A0J8BVJ6_BETVU	8.7e-7	76.4	Uncharacterized protein OS=Bet...	[more]

BLAST of Spo14429.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo14429.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016117	carotenoid biosynthetic process
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0050832	defense response to fungus
biological_process	GO:0009595	detection of biotic stimulus
biological_process	GO:0006000	fructose metabolic process
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0019761	glucosinolate biosynthetic process
biological_process	GO:0006096	glycolytic process
biological_process	GO:0009867	jasmonic acid mediated signaling pathway
biological_process	GO:0000023	maltose metabolic process
biological_process	GO:0006013	mannose metabolic process
biological_process	GO:0000165	MAPK cascade
biological_process	GO:0031348	negative regulation of defense response
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0009657	plastid organization
biological_process	GO:0016024	CDP-diacylglycerol biosynthetic process
biological_process	GO:0009409	response to cold
biological_process	GO:0009862	systemic acquired resistance, salicylic acid mediated signaling pathway
biological_process	GO:0005986	sucrose biosynthetic process
biological_process	GO:0010103	stomatal complex morphogenesis
biological_process	GO:0019252	starch biosynthetic process
biological_process	GO:0009697	salicylic acid biosynthetic process
biological_process	GO:0006364	rRNA processing
biological_process	GO:0010200	response to chitin
biological_process	GO:0043085	positive regulation of catalytic activity
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0010363	regulation of plant-type hypersensitive response
biological_process	GO:0043900	regulation of multi-organism process
biological_process	GO:0010310	regulation of hydrogen peroxide metabolic process
biological_process	GO:0019253	reductive pentose-phosphate cycle
biological_process	GO:0006612	protein targeting to membrane
biological_process	GO:0015976	carbon utilization
biological_process	GO:0008152	metabolic process
biological_process	GO:0007389	pattern specification process
biological_process	GO:0006655	phosphatidylglycerol biosynthetic process
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0006636	unsaturated fatty acid biosynthetic process
biological_process	GO:0010228	vegetative to reproductive phase transition of meristem
biological_process	GO:0042967	obsolete acyl-carrier-protein biosynthetic process
biological_process	GO:0048653	anther development
biological_process	GO:0009926	auxin polar transport
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0009832	plant-type cell wall biogenesis
biological_process	GO:0009664	plant-type cell wall organization
biological_process	GO:0008361	regulation of cell size
biological_process	GO:0010075	regulation of meristem growth
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0010015	root morphogenesis
biological_process	GO:0006412	translation
biological_process	GO:0048481	plant ovule development
biological_process	GO:0006783	heme biosynthetic process
biological_process	GO:0016226	iron-sulfur cluster assembly
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0030001	metal ion transport
biological_process	GO:0015995	chlorophyll biosynthetic process
cellular_component	GO:0000785	chromatin
cellular_component	GO:0031969	chloroplast membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0048046	apoplast
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0042132	fructose 1,6-bisphosphate 1-phosphatase activity
molecular_function	GO:0050278	sedoheptulose-bisphosphatase activity
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0016887	ATPase activity
molecular_function	GO:0003841	1-acylglycerol-3-phosphate O-acyltransferase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0043022	ribosome binding
molecular_function	GO:0043023	ribosomal large subunit binding
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0003677	DNA binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo21716	0.77	Barchart \| Table
Spo15092	0.71	Barchart \| Table
Spo12757	0.70	Barchart \| Table
Spo05935	0.69	Barchart \| Table
Spo09460	0.69	Barchart \| Table
Spo23874	0.68	Barchart \| Table
Spo12483	0.67	Barchart \| Table
Spo23921	0.67	Barchart \| Table
Spo24783	0.67	Barchart \| Table
Spo24416	0.67	Barchart \| Table
Spo24867	0.66	Barchart \| Table
Spo10118	0.66	Barchart \| Table
Spo13428	0.66	Barchart \| Table
Spo13934	0.66	Barchart \| Table
Spo21406	0.66	Barchart \| Table
Spo06711	0.65	Barchart \| Table
Spo06341	0.65	Barchart \| Table