Spo14469 (gene)

Overview
NameSpo14469
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionSmall nuclear ribonucleoprotein F (snRNP-F) (Sm protein F)
Locationchr2 : 40235599 .. 40241691 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACTTGAAAGTATTAAAATTTATATGACCTTCCCAATGGAATGTTATGCAAGATTACCTTGGAAGATTAGACTCATAATTAAAGAAGATACCAAGGAGAAACTAAAGCATCATGCTACATATCTAATAATGGATTTTAATTAAACTTGAAGAGGTGAGGACTGAGGAGGAGAGTAAACAAGGTGATCAACTTTTAGACAAATTCATGTGACACTTAACCATCTCCTGTAAGTTTATAAGTATCTTAGAATAAGTCCTTTCTCTTTTTCCAATAAAGTGTGAGAAGAATTCTTCAGTTATCTTTTTTTTNCCTTGATACAAATAAGATGACAACTTAACTGAATCGTCCTCTTCGAGCATAGGCAAAATGATAAACCCCAGAATCCCTTATTCATTTTTCCCCAATGTCATTGTAGATTATCCACTCCCAGCTCAAAAATTATTCGGGCTCTCNAACCCGAGACCTTGGTTAAGGAGCAAGAGGCCCTTAACCACTCATGCCAACCTCAATTGGTAATTCTTCAGTTATCTTGGAAGACTATTAAATGTCTTTCCCCCTCTATACACTGATTTGCGGAACAAACAAATACCATCTATGTGCTGTGAAGTGCGATAGGAATAGGTGTGGTTGTTGTTTTAGATTTATCATCTATGTCATACTTATGTGCACGCGAACGAAGGTATGAAGATTGTTGTGGTTTTATCTTGGCTTTATAATCTATGTGAATATTTGCTTCAGTGTTTCTGGCATTACCTTAGATATCTTTTTCTAAGTATTATTTGGGATACGTGATTTGTATCTTTACATGCCTAGAATCAAGGAGCTCAAGGATGTGTTGACTCAACTAGGTTTCCCTAAGCACGAATATAAAGTTGTTCGTTTGTTCTATAGTCACTAATTGAACTTCTTTAGTGATTTTTTTTTTATTGATTGGAATTGTTTTGTGATTTTTGTTTTTCTACTATTGCCATCGTTAGTTGAAGTACAATCTTCAGCTGATTATAACAGTAGTTCTGATTTTAATCAACTCCCAAAATTTGAACACGATGAATTATTAATTTATTAATCACTTTTACTGTTCTCAAATAATGAAATTAATTATGATGAATTGAATTAGTTAACCGTCATCATGAGATGTAGGAAATTAGTCGATTGGAATGGATAGGTAGCATAGTTAATGATAACTATTAAGTACGTAGTATATAATAGAGTTTTATTTACATTAGACCTTTGATATTTGGATTAATTTATATATTACGAAGTATGAACAAATAATCATAGTGTTTTATTCACTTTAAATATTTGCAAGTAAAACAAAAGTTTGTTGCCTGCAAGTTCGTTTTTTTATATGAGTGTAATATTTTAAATCTTAATGAAATATTTATGTTCCAGTTTGAATATGGACCTAACTTTTCATTTAGGCATAATTTATAAAAACACCTACGTCTAGATGATGATATAATAAGACAAAGATGTACGAAAATTGACAAACCCGTACATCGCACGGGCTTCAAAACTAGTCTCAAACATTTCACAGCTGATGGACTCAGCCAATTTCACCAACTTGGGTTGGTACACACCAATACAATAGGTTGTGTACTTGTGTGTTGTCTATGTGACTATGTCTATGCTGGAGTGGGCTGATCAACAAATACATACACAAAAGATGGGCTTCTAAAAGAGCCAGGAAACAAAGTTCCAAGCAAAACACAATTTCCCTCCTTTCGTACACTCTCTTCATCTCTTGCAGTCTTGCCTAACAATTTCTCTCTCCTCCACACCGGCGACTTACTCCGTCTACGAATTCAATTTTCTACCACATCTGAGAACCCCCATCAATTTCCCTTTTCGCAGGTATAATTTCTCATTTTTTCTTGTATTTTTTTGGTGCTGAATAATTGCTTTTTGTCGAATGTTGGGGTTTATGTTAGGGTTTTGCTTTTCTTAGTTTTAGTACCAGGTTTTGAATTTTATTGGGTGAATTTGATTGTACTTATGGTGTTTATTGCTTCAATTTGTATTATAATGCACTGGGAAAGTGGGAAGTATCTGAGATTTTTTGATGTTATTGGGAGGCTGCTGTTTTCTTTGAGACATTTGGTCGAGCAGTTGGTGTGCGGTGTTTAGCCTTGTTCTTTTATCCGTATGGTTAAAGAAAGAGAACATCTTTTTATATTGAGAGAAATTTTGATTACCTCTTATCTAATTTCACACAATCACCATTCCTCAAATCACCGGATTTCAAATTGTTTTATACGAAGTATTTGTTAGTTGTAACTAAGCGTTCTTCAACAGTTTTGAGCCTTATAAGGAAGTTTGGTGTTGTGTTGTGGGCAACGCGGTGGGCGTTAGGTAGTTGGACAGGTATGGATAAGTCTTATACCTAATTACCTATGGCTAGGTGGCTATAGTAGACAATGGTAGGTTACTGGTAACGAAAGTTGGGTCTTGGTTTTGATAAGAAATCCTTCACCTTGCAGTGTTCTTGCCAGCCTTTGTTAATCGGTTTGATTTGAAACAATCCTAAAACATTTGTTTATCCCCCCCACCACCATCCTTGGGAATACCATGAATCTCATACATTCTCTAGTTTGTCATTGTTCTAGGAAAATGCTGGTTACACACTTGCACTTAGATGCTCATATAAAGACTGAATATTTGTCAAAAGTCAAATGCCAAAAGGGTGTGTGTCCATCTTCTATTTGTCAACACAGCCATCTCTTCTACTTTCACATGCTCGTTGTCATGGGTTCTCTTTTAGTCCTTTCCATGACAATTACCCTCCGAAATCAAGTTGAAGCTCCAATTCTCCATGATATTGAGTTATTGACACGTTCTGCATTTATTCAAGTTGTAAGCCCAACATAGCTATACACTGCAGCACTTCTATTCTCTAAGTTGAAGTTGTATTTGTTTGGTGAATTCTTACTGAGATATCATTACATATTGTTAAGTGGGACTGGGGTCATTCAACTTTGATTCTTTGTTGATATGCTCTCAAAGAGATAGCTTTTGTATGTTTGAGTCCCATATTCAGCTATTTCCCTATTTAAGAAAAATGGTTAGGTCTGATGGTTCGAAGAATTCACCCTAGAGGCCTAGATACTACATGTTGGAATTAAAAATGTATGTTACAAGTTTGTTAAACTTCTTCTTATAGTAGAAAAGTTTTTTATTTTTTTATTTTTTATTTCATGATTGTCTCCCTACCAGCTGAAGGCTACTTTTCAAAAGCATTCTAAACTTCAAGGTTTACCGACGCTTGAGTCCATGGTGGTGGGACCTTCTGAAATTATTCCAAAAATTAATATGTTTATATTTTCAAATGATCTCAAAATATTGAAGTGATTGGTTAATGTTGATATTATTCCTCGTATAGTTCCTTTCAGAGATGAGTTTGAATACTAGCTAACATACATCTTTTTCCTTAACCTTAATTTTGAAGTGTACGTTTTGAACTTATCCTAGAAAAACCCTACAGCAGTGCCTAACTCTTTGTCATTCAGATAGTGCTTGCGAAACTCTTCAAATTCTTAATTCTTTCTTTGTCATCTTATACTCACAAATTTCTTTCTTTGGCGCTCTAAGCTGCTAACTGTCTTTTTGTCGTCTTCTCTTTCCTTCTGTTTGACCGTCACTTTGCCTCTCAAAGTTAGCTTATCAAATTTCCTAGGATTATTGTACTGGAACTGAAATAACCATTTGACTCTTCCTTGTCACAGGATTGCAGGACGCTGTTGACCGTAAAACAAAATGGCTGTAAGTACTTTTTCTCGTCACGTTCTTTTATGGTGCTGTGAACAACACTTATTATTAATGAACATCGATTTCTGAATTGGCAGCTTTGCCTTTTACTATCAAGTTTAGACTGGCTGGCCAGCATGAGAAAAAATTTCATGATACCAATTACCGAATAAAACTCTATCTGTTAAAACTTACACACCACTGTCATTTTTGCAGCTGCATTGCTCAACTTATGTTGGTTAATTTTTACTAATACTCAACATATTTATTTTTCCTGCTCAATGCATTCGTTTCCTTACCATGCTGTGATGGTTATGTCATTTCCTGGTATCTCTTCATTTGTTGATAAAAGACCTTGAATTTGTTTGTCAAATCAGAAAGCTGGATGTTTCTTAATCGCTTTCTGAAGTATAGTTAAATACTTGAATGTGTCTTAGCTTCAGATGGTTTTTCTTCTTGTTCATAGCCCTCATTTTCCTCATGGGTCGTGTGTACACCCTTGGGTGTCAGTGGTTTACAACTTTTGTTTTCTGTTGTCACGTAAGGAACACTATGGCTCTTTAAATGACGTCTTTTCACAAGTATGAAAGTATTGTTGCTAGCCAAAATGGGGCAAGAGGTACTTTTGTTGTGTGGACTTGGATCAGTTGAATGAAACCCTGTGTTCTGTAGATGCATGAATCTGTAAGTTATGTGGATCTTCTACCACGTTGTTGTACGTTTGGCAGCTTACACAAACTTTATGTTTGGCTCTCGTGCTCTCTTTTGCAGACTGTCCCAGTTAACCCAAAACCTTTCTTGAACAATTTGACTGGAAAGCCTGTCATTGTGAAGCTGAAGTGGGGAATGGAGTACAAAGGTAAGTTTCATGTGACAAGGAAGTCTTTTTTTCCAGTACTCCGTATTACCAGTTTCTTCTTTAGTTTCATGATTGTTACTTTTTCTGCTTGTTTGTTGCCCCTTAAATTTGCTCATGAATGTCTCAGTATTATCAATGGATTTTAAAACCAAAAGCATAGAAAAGAGGGATGACCTCCCTTTCTCTTAATATTTTCAGTTGGTGCAGATTTCATATTTACTTTGGTCTTTTGATATGCCATGGGAACATGTATTACAACATATTTCCTATGACATCTTGCAGGTTATCTTGTGTCAGTTGATGGGTACATGAACCTACAGGTGCATACTAACATCAACCTTTTTTTTAAAATAAATATTCTCTTCCTTGGAATTAATTGATTTTTAAAATTTGTGTTCTATTGCTGACTTTCATAGTTGCTTATCTTTTCGTATTGATAACTTTCCTGCAGTTGGCAAACACAGAAGAGTATATTGAAGGCCAGAAGACTGGAGATCTTGGGGAGATTCTCATCAGGTTATTAAAGCTTTCTTTAGACTTCCATTGCAGAATAAATTTCTAAGTTTGGTTTGCATATCTGGATTTATTTTAGAAAAACATATGAAGATGTGTGCAACACTTCAACTCTTAAACTGTGATTTATCCTGCCAACTTTATTGCATAGAATATTCGTGTTGTGGTGTTGCCTCGAAAGTGAATTCTTGGCTATGGATTTTAAATCCTTACTATAAACGTGTAAAAGGATATGTTTGGTTCAAAAGTAGTCATTATGAACTGTTTTTCCTGGCTTCAAATGGAAAGTAAGGAAGTCAGGTTTCAAACTTTATTTTCCTTTGTCTCCTTGCTACCTAAGTTTGAGAGAATTGAACCGGGAAATGGAGTCATGAAGGGAGAGGAGAAAGGTGAGTGGATAGGGAAGAAAATTTGGTGGCATTCCTTCTTTTTAAAAGAAAGTCTTTTCCATCCTTTATTTTCCATTTACCATTCAAGAAAATAGTTTTCACCCCTTTAAAACCAAACAGAGGATAATGTGAAAACTAGTTTCCGTGGAAAGTGTTGCAGGTTTTTTGGTTTCTGGCGTAAGCTGTCTAGTCCAATTAGACTAACATTATGGTTTACCTTTTACATTTGTGTAGGTGCAACAATGTCTTGTATCTTCGAGGAGTTCCTGAGGACGAAGAAATAGAGGATGCTGACAAAGACTGAAGAAATATACGGAGTTACCTTTTTGCTAGGAATGCAACTGATGGATTGTAATGCATTATGCTCGTCTGAGAAGGTTAATGTTAGGCGCAACAACTAAGGAATTTTTAGGTGGATTTGATACATTTTATGTATAAAAAGTTCACTTATTATGAAAAATAGAAATTCCTTATTTGTAATGATAGCAAAATTTTATGTGTTATGACTTGTGACATCCAAATAAGGGATTTTCTCAAGTTATCGGATAGGGAATTTTGGGTTTCCTCGTAATCTTGTTTCCGTA

mRNA sequence

ATGGAACTTGAAATCTTGCCTAACAATTTCTCTCTCCTCCACACCGGCGACTTACTCCGTCTACGAATTCAATTTTCTACCACATCTGAGAACCCCCATCAATTTCCCTTTTCGCAGACTGTCCCAGTTAACCCAAAACCTTTCTTGAACAATTTGACTGGAAAGCCTGTCATTGTGAAGCTGAAGTGGGGAATGGAGTACAAAGGTTATCTTGTGTCAGTTGATGGGTACATGAACCTACAGTTGGCAAACACAGAAGAGTATATTGAAGGCCAGAAGACTGGAGATCTTGGGGAGATTCTCATCAGGTGCAACAATGTCTTGTATCTTCGAGGAGTTCCTGAGGACGAAGAAATAGAGGATGCTGACAAAGACTGAAGAAATATACGGAGTTACCTTTTTGCTAGGAATGCAACTGATGGATTGTAATGCATTATGCTCGTCTGAGAAGGTTAATGTTAGGCGCAACAACTAAGGAATTTTTAGGTGGATTTGATACATTTTATGTATAAAAAGTTCACTTATTATGAAAAATAGAAATTCCTTATTTGTAATGATAGCAAAATTTTATGTGTTATGACTTGTGACATCCAAATAAGGGATTTTCTCAAGTTATCGGATAGGGAATTTTGGGTTTCCTCGTAATCTTGTTTCCGTA

Coding sequence (CDS)

ATGGAACTTGAAATCTTGCCTAACAATTTCTCTCTCCTCCACACCGGCGACTTACTCCGTCTACGAATTCAATTTTCTACCACATCTGAGAACCCCCATCAATTTCCCTTTTCGCAGACTGTCCCAGTTAACCCAAAACCTTTCTTGAACAATTTGACTGGAAAGCCTGTCATTGTGAAGCTGAAGTGGGGAATGGAGTACAAAGGTTATCTTGTGTCAGTTGATGGGTACATGAACCTACAGTTGGCAAACACAGAAGAGTATATTGAAGGCCAGAAGACTGGAGATCTTGGGGAGATTCTCATCAGGTGCAACAATGTCTTGTATCTTCGAGGAGTTCCTGAGGACGAAGAAATAGAGGATGCTGACAAAGACTGA

Protein sequence

MELEILPNNFSLLHTGDLLRLRIQFSTTSENPHQFPFSQTVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDLGEILIRCNNVLYLRGVPEDEEIEDADKD
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo14469.1Spo14469.1mRNA


Homology
[Close]
BLAST of Spo14469.1 vs. NCBI nr
Match: gi|902200722|gb|KNA13809.1| (hypothetical protein SOVF_113340 [Spinacia oleracea])

HSP 1 Score: 181.4 bits (459), Expect = 9.600e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1 

		  

Query: 40  TVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDLGE 99
           TVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDLGE
Sbjct: 3   TVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDLGE 62

Query: 100 ILIRCNNVLYLRGVPEDEEIEDADKD 126
           ILIRCNNVLYLRGVPEDEEIEDADKD
Sbjct: 63  ILIRCNNVLYLRGVPEDEEIEDADKD 88
[Close]
BLAST of Spo14469.1 vs. NCBI nr
Match: gi|731312030|ref|XP_010672300.1| (PREDICTED: probable small nuclear ribonucleoprotein F [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 175.3 bits (443), Expect = 6.900e-41
Identity = 83/86 (96.51%), Postives = 84/86 (97.67%), Query Frame = 1 

		  

Query: 40  TVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDLGE 99
           TVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVD YMNLQLANTEEYIEGQKTGDLGE
Sbjct: 3   TVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQKTGDLGE 62

Query: 100 ILIRCNNVLYLRGVPEDEEIEDADKD 126
           ILIRCNNVL+LRGVPEDEEIEDAD D
Sbjct: 63  ILIRCNNVLHLRGVPEDEEIEDADND 88
[Close]
BLAST of Spo14469.1 vs. NCBI nr
Match: gi|731378546|ref|XP_010668211.1| (PREDICTED: probable small nuclear ribonucleoprotein F [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 174.5 bits (441), Expect = 1.200e-40
Identity = 82/86 (95.35%), Postives = 85/86 (98.84%), Query Frame = 1 

		  

Query: 40  TVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDLGE 99
           TVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVD YMNLQLANTEEYIEGQKTGDLGE
Sbjct: 3   TVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQKTGDLGE 62

Query: 100 ILIRCNNVLYLRGVPEDEEIEDADKD 126
           ILIRCNNVL+LRGVPEDEEI+DAD+D
Sbjct: 63  ILIRCNNVLHLRGVPEDEEIDDADQD 88
[Close]
BLAST of Spo14469.1 vs. NCBI nr
Match: gi|1012337667|gb|KYP48936.1| (putative small nuclear ribonucleoprotein F, partial [Cajanus cajan])

HSP 1 Score: 171.0 bits (432), Expect = 1.300e-39
Identity = 81/87 (93.10%), Postives = 84/87 (96.55%), Query Frame = 1 

		  

Query: 39  QTVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDLG 98
           QT+PVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVD YMNLQLANTEEYIEGQ TG+LG
Sbjct: 2   QTIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNLG 61

Query: 99  EILIRCNNVLYLRGVPEDEEIEDADKD 126
           EILIRCNNVLYLRGVPEDEEIEDA +D
Sbjct: 62  EILIRCNNVLYLRGVPEDEEIEDAAED 88
[Close]
BLAST of Spo14469.1 vs. NCBI nr
Match: gi|719966333|ref|XP_010258634.1| (PREDICTED: probable small nuclear ribonucleoprotein F [Nelumbo nucifera])

HSP 1 Score: 170.2 bits (430), Expect = 2.200e-39
Identity = 80/86 (93.02%), Postives = 84/86 (97.67%), Query Frame = 1 

		  

Query: 40  TVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDLGE 99
           TVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVD YMNLQLANTEEYI+GQ TG+LGE
Sbjct: 3   TVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDAYMNLQLANTEEYIDGQFTGNLGE 62

Query: 100 ILIRCNNVLYLRGVPEDEEIEDADKD 126
           ILIRCNNVLYLRGVPEDEEIEDA++D
Sbjct: 63  ILIRCNNVLYLRGVPEDEEIEDAERD 88
[Close]
BLAST of Spo14469.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R4D7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_004180 PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 6.700e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1 

		  

Query: 40  TVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDLGE 99
           TVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDLGE
Sbjct: 3   TVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDLGE 62

Query: 100 ILIRCNNVLYLRGVPEDEEIEDADKD 126
           ILIRCNNVLYLRGVPEDEEIEDADKD
Sbjct: 63  ILIRCNNVLYLRGVPEDEEIEDADKD 88
[Close]
BLAST of Spo14469.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FYC9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g006230 PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 4.800e-41
Identity = 83/86 (96.51%), Postives = 84/86 (97.67%), Query Frame = 1 

		  

Query: 40  TVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDLGE 99
           TVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVD YMNLQLANTEEYIEGQKTGDLGE
Sbjct: 3   TVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQKTGDLGE 62

Query: 100 ILIRCNNVLYLRGVPEDEEIEDADKD 126
           ILIRCNNVL+LRGVPEDEEIEDAD D
Sbjct: 63  ILIRCNNVLHLRGVPEDEEIEDADND 88
[Close]
BLAST of Spo14469.1 vs. UniProtKB/TrEMBL
Match: A0A0J8DVD8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_015110 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 8.200e-41
Identity = 82/86 (95.35%), Postives = 85/86 (98.84%), Query Frame = 1 

		  

Query: 40  TVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDLGE 99
           TVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVD YMNLQLANTEEYIEGQKTGDLGE
Sbjct: 3   TVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQKTGDLGE 62

Query: 100 ILIRCNNVLYLRGVPEDEEIEDADKD 126
           ILIRCNNVL+LRGVPEDEEI+DAD+D
Sbjct: 63  ILIRCNNVLHLRGVPEDEEIDDADQD 88
[Close]
BLAST of Spo14469.1 vs. UniProtKB/TrEMBL
Match: A0A151S2B6_CAJCA (Putative small nuclear ribonucleoprotein F (Fragment) OS=Cajanus cajan GN=KK1_029337 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 9.100e-40
Identity = 81/87 (93.10%), Postives = 84/87 (96.55%), Query Frame = 1 

		  

Query: 39  QTVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDLG 98
           QT+PVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVD YMNLQLANTEEYIEGQ TG+LG
Sbjct: 2   QTIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNLG 61

Query: 99  EILIRCNNVLYLRGVPEDEEIEDADKD 126
           EILIRCNNVLYLRGVPEDEEIEDA +D
Sbjct: 62  EILIRCNNVLYLRGVPEDEEIEDAAED 88
[Close]
BLAST of Spo14469.1 vs. UniProtKB/TrEMBL
Match: A0A0S3R856_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G478900 PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.600e-39
Identity = 81/86 (94.19%), Postives = 83/86 (96.51%), Query Frame = 1 

		  

Query: 40  TVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDLGE 99
           TVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVD YMNLQLANTEEYIEGQ TG+LGE
Sbjct: 3   TVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNLGE 62

Query: 100 ILIRCNNVLYLRGVPEDEEIEDADKD 126
           ILIRCNNVLYLRGVPEDEEIEDA +D
Sbjct: 63  ILIRCNNVLYLRGVPEDEEIEDAAED 88
[Close]
BLAST of Spo14469.1 vs. ExPASy Swiss-Prot
Match: RUXF_ARATH (Probable small nuclear ribonucleoprotein F OS=Arabidopsis thaliana GN=At4g30220 PE=2 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 4.900e-39
Identity = 74/86 (86.05%), Postives = 81/86 (94.19%), Query Frame = 1 

		  

Query: 40  TVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDLGE 99
           T+PVNPKPFLNNLTGK VIVKLKWGMEYKG+L SVD YMNLQL NTEEYI+GQ TG+LGE
Sbjct: 3   TIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGE 62

Query: 100 ILIRCNNVLYLRGVPEDEEIEDADKD 126
           ILIRCNNVLY+RGVPEDEE+EDAD+D
Sbjct: 63  ILIRCNNVLYVRGVPEDEELEDADQD 88
[Close]
BLAST of Spo14469.1 vs. ExPASy Swiss-Prot
Match: RUXF_BOVIN (Small nuclear ribonucleoprotein F OS=Bos taurus GN=SNRPF PE=3 SV=2)

HSP 1 Score: 144.1 bits (362), Expect = 1.100e-33
Identity = 64/79 (81.01%), Postives = 74/79 (93.67%), Query Frame = 1 

		  

Query: 40  TVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDLGE 99
           ++P+NPKPFLN LTGKPV+VKLKWGMEYKGYLVSVDGYMN+QLANTEEYI+G  +G LGE
Sbjct: 2   SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGE 61

Query: 100 ILIRCNNVLYLRGVPEDEE 119
           +LIRCNNVLY+RGV E+EE
Sbjct: 62  VLIRCNNVLYIRGVEEEEE 80
[Close]
BLAST of Spo14469.1 vs. ExPASy Swiss-Prot
Match: RUXF_XENLA (Small nuclear ribonucleoprotein F OS=Xenopus laevis GN=snrpf PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.100e-33
Identity = 64/79 (81.01%), Postives = 74/79 (93.67%), Query Frame = 1 

		  

Query: 40  TVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDLGE 99
           ++P+NPKPFLN LTGKPV+VKLKWGMEYKGYLVSVDGYMN+QLANTEEYI+G  +G LGE
Sbjct: 2   SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGE 61

Query: 100 ILIRCNNVLYLRGVPEDEE 119
           +LIRCNNVLY+RGV E+EE
Sbjct: 62  VLIRCNNVLYIRGVEEEEE 80
[Close]
BLAST of Spo14469.1 vs. ExPASy Swiss-Prot
Match: RUXF_MOUSE (Small nuclear ribonucleoprotein F OS=Mus musculus GN=Snrpf PE=1 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.100e-33
Identity = 64/79 (81.01%), Postives = 74/79 (93.67%), Query Frame = 1 

		  

Query: 40  TVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDLGE 99
           ++P+NPKPFLN LTGKPV+VKLKWGMEYKGYLVSVDGYMN+QLANTEEYI+G  +G LGE
Sbjct: 2   SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGE 61

Query: 100 ILIRCNNVLYLRGVPEDEE 119
           +LIRCNNVLY+RGV E+EE
Sbjct: 62  VLIRCNNVLYIRGVEEEEE 80
[Close]
BLAST of Spo14469.1 vs. ExPASy Swiss-Prot
Match: RUXF_HUMAN (Small nuclear ribonucleoprotein F OS=Homo sapiens GN=SNRPF PE=1 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.100e-33
Identity = 64/79 (81.01%), Postives = 74/79 (93.67%), Query Frame = 1 

		  

Query: 40  TVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDLGE 99
           ++P+NPKPFLN LTGKPV+VKLKWGMEYKGYLVSVDGYMN+QLANTEEYI+G  +G LGE
Sbjct: 2   SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGE 61

Query: 100 ILIRCNNVLYLRGVPEDEE 119
           +LIRCNNVLY+RGV E+EE
Sbjct: 62  VLIRCNNVLYIRGVEEEEE 80
[Close]
BLAST of Spo14469.1 vs. TAIR (Arabidopsis)
Match: AT4G30220.2 (small nuclear ribonucleoprotein F)

HSP 1 Score: 163.7 bits (413), Expect = 7.300e-41
Identity = 75/87 (86.21%), Postives = 82/87 (94.25%), Query Frame = 1 

		  

Query: 39  QTVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDLG 98
           QT+PVNPKPFLNNLTGK VIVKLKWGMEYKG+L SVD YMNLQL NTEEYI+GQ TG+LG
Sbjct: 10  QTIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLG 69

Query: 99  EILIRCNNVLYLRGVPEDEEIEDADKD 126
           EILIRCNNVLY+RGVPEDEE+EDAD+D
Sbjct: 70  EILIRCNNVLYVRGVPEDEELEDADQD 96
[Close]
BLAST of Spo14469.1 vs. TAIR (Arabidopsis)
Match: AT2G14285.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 112.5 bits (280), Expect = 1.900e-25
Identity = 51/61 (83.61%), Postives = 57/61 (93.44%), Query Frame = 1 

		  

Query: 65  MEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDLGEILIRCNNVLYLRGVPEDEEIEDADK 124
           MEYKG+L SVD YMNLQL NTEEYI+GQ TG+LGEILIRCNNVLY+RGVPEDEE+EDAD+
Sbjct: 1   MEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRCNNVLYVRGVPEDEELEDADQ 60

Query: 125 D 126
           D
Sbjct: 61  D 61
[Close]
BLAST of Spo14469.1 vs. TAIR (Arabidopsis)
Match: AT2G43810.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 77.4 bits (189), Expect = 6.900e-15
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 1 

		  

Query: 45  PKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDLGEILIRC 104
           P  FL ++ GKPV+VKL  G++Y+G L  +DGYMN+ +  TEEY+ GQ     G+  +R 
Sbjct: 15  PADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVNGQLKNTYGDAFVRG 74

Query: 105 NNVLYL 111
           NNVLY+
Sbjct: 75  NNVLYI 80
[Close]
BLAST of Spo14469.1 vs. TAIR (Arabidopsis)
Match: AT3G59810.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 77.0 bits (188), Expect = 9.000e-15
Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = 1 

		  

Query: 45  PKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDLGEILIRC 104
           P  FL ++ G+PV+VKL  G++Y+G L  +DGYMN+ +  TEEY+ GQ     G+  IR 
Sbjct: 15  PADFLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74

Query: 105 NNVLYLRGV 114
           NNVLY+  V
Sbjct: 75  NNVLYISTV 83
The following BLAST results are available for this feature:
BLAST of Spo14469.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902200722|gb|KNA13809.1|9.6e-43100.hypothetical protein SOVF_1133... [more]
gi|731312030|ref|XP_010672300.1|6.9e-4196.5PREDICTED: probable small nucl... [more]
gi|731378546|ref|XP_010668211.1|1.2e-4095.3PREDICTED: probable small nucl... [more]
gi|1012337667|gb|KYP48936.1|1.3e-3993.1putative small nuclear ribonuc... [more]
gi|719966333|ref|XP_010258634.1|2.2e-3993.0PREDICTED: probable small nucl... [more]
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BLAST of Spo14469.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9R4D7_SPIOL6.7e-43100.Uncharacterized protein OS=Spi... [more]
A0A0J8FYC9_BETVU4.8e-4196.5Uncharacterized protein OS=Bet... [more]
A0A0J8DVD8_BETVU8.2e-4195.3Uncharacterized protein OS=Bet... [more]
A0A151S2B6_CAJCA9.1e-4093.1Putative small nuclear ribonuc... [more]
A0A0S3R856_PHAAN2.6e-3994.1Uncharacterized protein OS=Vig... [more]
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BLAST of Spo14469.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RUXF_ARATH4.9e-3986.0Probable small nuclear ribonuc... [more]
RUXF_BOVIN1.1e-3381.0Small nuclear ribonucleoprotei... [more]
RUXF_XENLA1.1e-3381.0Small nuclear ribonucleoprotei... [more]
RUXF_MOUSE1.1e-3381.0Small nuclear ribonucleoprotei... [more]
RUXF_HUMAN1.1e-3381.0Small nuclear ribonucleoprotei... [more]
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BLAST of Spo14469.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 4
Match NameE-valueIdentityDescription
AT4G30220.27.3e-4186.2small nuclear ribonucleoprotei... [more]
AT2G14285.11.9e-2583.6Small nuclear ribonucleoprotei... [more]
AT2G43810.16.9e-1548.4Small nuclear ribonucleoprotei... [more]
AT3G59810.19.0e-1547.8Small nuclear ribonucleoprotei... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 48..110
score: 3.4
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 47..112
score: 3.3
IPR010920LSM domainunknownSSF50182Sm-like ribonucleoproteinscoord: 45..114
score: 1.41
NoneNo IPR availableGENE3D2.30.30.100coord: 48..114
score: 5.7
NoneNo IPR availablePANTHERPTHR11021SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-Fcoord: 33..124
score: 3.3

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006397 mRNA processing
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0009451 RNA modification
biological_process GO:0009658 chloroplast organization
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0045036 protein targeting to chloroplast
biological_process GO:0006399 tRNA metabolic process
biological_process GO:0009156 ribonucleoside monophosphate biosynthetic process
biological_process GO:0006334 nucleosome assembly
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006486 protein glycosylation
biological_process GO:0016310 phosphorylation
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0009165 nucleotide biosynthetic process
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0009220 pyrimidine ribonucleotide biosynthetic process
biological_process GO:0006783 heme biosynthetic process
biological_process GO:0008380 RNA splicing
biological_process GO:0007264 small GTPase mediated signal transduction
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0006886 intracellular protein transport
biological_process GO:0031167 rRNA methylation
biological_process GO:0009073 aromatic amino acid family biosynthetic process
biological_process GO:0016226 iron-sulfur cluster assembly
biological_process GO:0006364 rRNA processing
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0009965 leaf morphogenesis
biological_process GO:0008152 metabolic process
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0009697 salicylic acid biosynthetic process
biological_process GO:0006396 RNA processing
biological_process GO:0070475 rRNA base methylation
biological_process GO:0030488 tRNA methylation
biological_process GO:0009409 response to cold
biological_process GO:0006782 protoporphyrinogen IX biosynthetic process
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:0030150 protein import into mitochondrial matrix
biological_process GO:0090351 seedling development
biological_process GO:0042793 plastid transcription
biological_process GO:0018160 peptidyl-pyrromethane cofactor linkage
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0042742 defense response to bacterium
biological_process GO:0010207 photosystem II assembly
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0006412 translation
biological_process GO:0010103 stomatal complex morphogenesis
biological_process GO:0009902 chloroplast relocation
biological_process GO:0030154 cell differentiation
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0009814 defense response, incompatible interaction
cellular_component GO:0016020 membrane
cellular_component GO:0005829 cytosol
cellular_component GO:0005886 plasma membrane
cellular_component GO:1990904 ribonucleoprotein complex
cellular_component GO:0048046 apoplast
cellular_component GO:0032040 small-subunit processome
cellular_component GO:0005622 intracellular
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005634 nucleus
cellular_component GO:0005840 ribosome
cellular_component GO:0005802 trans-Golgi network
cellular_component GO:0005744 mitochondrial inner membrane presequence translocase complex
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009507 chloroplast
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005737 cytoplasm
cellular_component GO:0000311 plastid large ribosomal subunit
cellular_component GO:0005739 mitochondrion
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0005681 spliceosomal complex
cellular_component GO:0009536 plastid
cellular_component GO:0005768 endosome
molecular_function GO:0005515 protein binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0051536 iron-sulfur cluster binding
molecular_function GO:0008173 RNA methyltransferase activity
molecular_function GO:0004418 hydroxymethylbilane synthase activity
molecular_function GO:0003824 catalytic activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0016757 transferase activity, transferring glycosyl groups
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0004749 ribose phosphate diphosphokinase activity
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0016301 kinase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0005525 GTP binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004527 exonuclease activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo086250.77Barchart | Table
Spo184780.76Barchart | Table
Spo239330.75Barchart | Table
Spo226540.75Barchart | Table
Spo266730.75Barchart | Table
Spo218080.75Barchart | Table
Spo029640.74Barchart | Table
Spo183980.73Barchart | Table
Spo149990.73Barchart | Table
Spo026480.73Barchart | Table
Spo022140.73Barchart | Table
Spo049950.72Barchart | Table
Spo240160.72Barchart | Table
Spo217570.72Barchart | Table
Spo101330.71Barchart | Table
Spo241530.71Barchart | Table
Spo229990.71Barchart | Table
Spo137190.71Barchart | Table
Spo040680.71Barchart | Table
Spo050780.71Barchart | Table
Spo056070.71Barchart | Table
Spo012710.71Barchart | Table
Spo259130.71Barchart | Table
Spo210740.71Barchart | Table
Spo268460.71Barchart | Table
Spo057330.70Barchart | Table
Spo039720.70Barchart | Table
Spo133740.70Barchart | Table
Spo224850.70Barchart | Table
Spo107440.70Barchart | Table
Spo122280.70Barchart | Table
Spo158410.69Barchart | Table
Spo272100.69Barchart | Table
Spo062870.69Barchart | Table
Spo087150.69Barchart | Table
Spo101060.69Barchart | Table
Spo115190.69Barchart | Table
Spo132400.69Barchart | Table
Spo143100.69Barchart | Table
Spo020010.69Barchart | Table
Spo165630.69Barchart | Table
Spo173670.69Barchart | Table
Spo185980.68Barchart | Table
Spo236240.68Barchart | Table
Spo088680.68Barchart | Table
Spo215010.67Barchart | Table
Spo056800.67Barchart | Table
Spo058410.67Barchart | Table
Spo092820.67Barchart | Table
Spo144830.67Barchart | Table
Spo191970.67Barchart | Table
Spo232270.67Barchart | Table
Spo000270.66Barchart | Table
Spo114450.66Barchart | Table
Spo259120.66Barchart | Table
Spo014960.66Barchart | Table
Spo012360.66Barchart | Table
Spo208060.66Barchart | Table
Spo157930.66Barchart | Table
Spo157590.66Barchart | Table
Spo148570.66Barchart | Table
Spo182960.65Barchart | Table
Spo131800.65Barchart | Table
Spo272530.65Barchart | Table
Spo076440.65Barchart | Table
Spo038830.65Barchart | Table