Spo14484 (gene) | SpinachBase

Overview


Name	Spo14484
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Thylakoid lumenal 15.0 kDa protein
Location	chr5 : 30112329 .. 30115577 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGGAATTTTCGAATAGTGTCTTATCCAAATTAATTTCTCTTCAAAATTGGCTCTCTGGTGATCAAGGTATAACAATGGCGGTCCACCATCTTCCCTGGGCTGTCAATGGCGGAAGACCTACTGAAATAGCTGCTCGAATAACTTGTGCAACAAATGCAACTCCAAAAGTAAAACTGTCCCATTTTAAGAAGTGGGTATCTGAAGTTGGGTCGAAATCTCTCAAACTTGCTCTTTCTAGCTCTCTCGCTATTGCACTTTCTTATAATGGTAAAATTCTGATTCTTGTTTAAATCATGTTGTTTCAGCTTTTCTTTAATTCATCGACATTTCAATTAATTCCCAATATCGCCGTTTTTTACCACCTACCTATAATAACTAGGTACTTGTTTGATTAGTGCACTAATGAACCTTAACAATGTCAGCTTGATTTAATTCGGAGTTATGTTGATATGTTAAGTACAGATTGGTCTCTATAATTTCATATTTTTTTGGTGCATAAAAGATTCTGGTGTTACTGTTGATGTTTGTTGGGCAGTTGGGGTAATTAGATGGGTAGTAGACTGGAACATTGTTTGTCGAGGAAGTATAAACCCGAAACGGTGTGTGGATTGATGACTCTGTAAATACACAATGGAATAACTAGTGTCTTCTAATGTGGATTTCAACTGGCTTAGCTGGTTAGAATCTCAAGGGTAGTACCTAAGAATTCAGATCAAAACCTGTCTGCATCAATTATTCATTTGCTCTTTGTCGCTCTATCTAGCCTATACATCCAAAAAATAGTGTATTTCTAGTGTAGTACTATGATTGTGTTGACGAGTGAGGGATGTTACACTTTTAAGTTTTAACAATGATGGGATAAGCGTCCACCATTCAAAGCTAGCGTATTCAAAGGAAATAATGTCAGGGATATCTCAATGGATTCGCTTGATCGATGACAGGAAATGACAAACTCATCTACCTTTATAACATCATTTTCAGAAAAGGAGAGAAGAGATTACAGCATACATGCAATTAAACAAGTTGCTACTCCATAGATTAACCAAGAGCGCACATGTGTATGCTTGTGTATTTTCATAATTAATAAGCTTAGTTATAAAGAAGTGAAAAGCTGAAGAATAACTTCTTAAACTAGTTTTGACCTTAAAAATTTATAATTAATATTTGATGGAGCAATCTCTGGAGAGCAGGAAAGCACTGTTCTCATGTAATCCTATCATAAGTTCATCTTAAGAGGTTGTTACAGCTTTATGCTTCAAATATCATGTGTAGTTCTCTACAAAAACAAAAATCCTTGCGAGCATAATATTCATGGTGAATACTTTTGTTCTAATGTGACGCAAGATTTGTTGAGTCGAACTTTAACTTTAAAAATAAAGCGTGTAAGGATTGTATCCAGATGTCATGGTAGGAGCGGGCCTTTGGTACTGAGTTTCTTATGATTCTTGTCGCTAATCCCTTTGTTTTCTTTTGTTTGCTCTTCACTATATATGGCTTTTGTAGCTGGTCGCCTTTTCTCTGTATGGTCTATGCCCTATGGGGAGGCTTTCATTAAGTAGATATCATGGTACATGATGCTCTGATGGAGCTCCTCTTCCATTGATTCTCATTTTTGTTGCAAACGGTTTACCAATGATCTACTCTGTGTTTTTTTGTAATCAATTAAGATATCTGCTGGATGCCTTTCTTTGCATAAGCGGGTGATTTATTTCACCTTGCAGGTGTCGAATACGCTGAAGCTAAAACGGGTGTTAATAAGCCGGAACTGCTCCCTAAAGAATACACTACAGTCATCGATGTTGCTGGCTTCCTCTCTTCTGGTCAGGTCAGACTGCCCTTTCCTGTTTACATTCATATATAATACTTCATAGGCTGCTCTTAACAGCTTTACCTACCAAGATATACTTCAAACAAGAATATTGATCTGCTTCAACAGTCAGCTCAGAATTTGTTTTGTATTAGTGAGTCTTAAAGTGAGTATTGTAGTATTGTCTCTCACTCTCATTTATATAGAATATGCTACTCCGTATTCTTAGTAGCTTGTGGTATAGAAAGGTGTCTTATTTGGAAATAATAAGTTCTTCCTAGAAGAGATATACCCATATGGCAATGACAATTTTCCAGGAAAAGAGACTCGCGGAGGAAGTAGCTGATCTTGAGAAGGATACAGGGTTCAAGTTGAGAATCTTAGCACAGAATTACCCTGATACGCCCGGTAGCCACAGCTTACTTTCTTTGTACTTTTATTTTCTTCTCCAAATTACAATTTTGTTTAGAAGTATACCTTTTCAGAATTTGTTTTGGCATATATTTTTTAGAAGATTAAATCTGTGGTCTTCTGACAGGATTGGCAATCAAGGATTATTGGCAAGTAGATGATAGAACAATTGTCTTTGTTGCTGATCCTACTTTTGGTAAATTCTCGTTGTGGAACTGATGTTGGATAAGTCTTGTGCTGGTACATTTAATGATTATTGTACATCTGGTTGATAGGTAATATATTGAATTTTAACGTGGGAGATCAAGTTGATCTTGACATACCGCGTAGTTTCTGGAGCCGTTTGGCTGGGAAATATGGAAATATATTCTACTGGAAAGAAAAGGTGAAAGTTCCTTACATCTCTAAGTGTACCTCTTTATTTATTTTTGCAGCATTCAAGCTTTAATTTCAGTTGGCAGACTATCACATCGTTTTGAAAGTATCTATTTCCCCAACTAGATAGACAAGTAATAGGGGTCGAAATGAGCAAATTACAGTTACACTTGCTATCAATATTATTTCGTTTTGTCAGTTGGCAACTGAATCAGCCTGACTCCTTGTTTGTATCTATCTTTGCCATAGGGAGAAGATGCATCGATTGAAGCTGCTGTTAATGCTATATCTTATTGCTTAAGAGAACCTGTTGGTCCAAGTAATTGCTCCGAGGTAATGTAAATAGAATGTTGTTGGAGACCAAGGAAGATACGGCTCTACTTATTTCTTAAGATAGTAAAATTGTGATTTACTTTTATGGGAGTTAGTATGTTGATATAATTAAGTTACCTTTCCCTGTATTATTAACCTCAAAGGAGAAGTTTGAAGAGAGTATCAAACACGGCGAAGAGCATTTTCATAAAGTGAATGTAATGAACACATTTTGTTCTTTCTTGGTGTGGGTGTTGGTTTGCTTGTCGCTCTTGCTCACATTTTTTTCAAGAAAATCCAAGCATCTGTTTAAGGCGAGAATAGAGAACAGAGTGAAAAGTTGA

mRNA sequence

CGGAATTTTCGAATAGTGTCTTATCCAAATTAATTTCTCTTCAAAATTGGCTCTCTGGTGATCAAGGTATAACAATGGCGGTCCACCATCTTCCCTGGGCTGTCAATGGCGGAAGACCTACTGAAATAGCTGCTCGAATAACTTGTGCAACAAATGCAACTCCAAAAGTAAAACTGTCCCATTTTAAGAAGTGGGTATCTGAAGTTGGGTCGAAATCTCTCAAACTTGCTCTTTCTAGCTCTCTCGCTATTGCACTTTCTTATAATGGTGTCGAATACGCTGAAGCTAAAACGGGTGTTAATAAGCCGGAACTGCTCCCTAAAGAATACACTACAGTCATCGATGTTGCTGGCTTCCTCTCTTCTGGTCAGGAAAAGAGACTCGCGGAGGAAGTAGCTGATCTTGAGAAGGATACAGGGTTCAAGTTGAGAATCTTAGCACAGAATTACCCTGATACGCCCGGATTGGCAATCAAGGATTATTGGCAAGTAGATGATAGAACAATTGTCTTTGTTGCTGATCCTACTTTTGGTAATATATTGAATTTTAACGTGGGAGATCAAGTTGATCTTGACATACCGCGTAGTTTCTGGAGCCGTTTGGCTGGGAAATATGGAAATATATTCTACTGGAAAGAAAAGGGAGAAGATGCATCGATTGAAGCTGCTGTTAATGCTATATCTTATTGCTTAAGAGAACCTGTTGGTCCAAGTAATTGCTCCGAGGAGAAGTTTGAAGAGAGTATCAAACACGGCGAAGAGCATTTTCATAAAGTGAATGTAATGAACACATTTTGTTCTTTCTTGGTGTGGGTGTTGGTTTGCTTGTCGCTCTTGCTCACATTTTTTTCAAGAAAATCCAAGCATCTGTTTAAGGCGAGAATAGAGAACAGAGTGAAAAGTTGA

Coding sequence (CDS)

ATGGCGGTCCACCATCTTCCCTGGGCTGTCAATGGCGGAAGACCTACTGAAATAGCTGCTCGAATAACTTGTGCAACAAATGCAACTCCAAAAGTAAAACTGTCCCATTTTAAGAAGTGGGTATCTGAAGTTGGGTCGAAATCTCTCAAACTTGCTCTTTCTAGCTCTCTCGCTATTGCACTTTCTTATAATGGTGTCGAATACGCTGAAGCTAAAACGGGTGTTAATAAGCCGGAACTGCTCCCTAAAGAATACACTACAGTCATCGATGTTGCTGGCTTCCTCTCTTCTGGTCAGGAAAAGAGACTCGCGGAGGAAGTAGCTGATCTTGAGAAGGATACAGGGTTCAAGTTGAGAATCTTAGCACAGAATTACCCTGATACGCCCGGATTGGCAATCAAGGATTATTGGCAAGTAGATGATAGAACAATTGTCTTTGTTGCTGATCCTACTTTTGGTAATATATTGAATTTTAACGTGGGAGATCAAGTTGATCTTGACATACCGCGTAGTTTCTGGAGCCGTTTGGCTGGGAAATATGGAAATATATTCTACTGGAAAGAAAAGGGAGAAGATGCATCGATTGAAGCTGCTGTTAATGCTATATCTTATTGCTTAAGAGAACCTGTTGGTCCAAGTAATTGCTCCGAGGAGAAGTTTGAAGAGAGTATCAAACACGGCGAAGAGCATTTTCATAAAGTGAATGTAATGAACACATTTTGTTCTTTCTTGGTGTGGGTGTTGGTTTGCTTGTCGCTCTTGCTCACATTTTTTTCAAGAAAATCCAAGCATCTGTTTAAGGCGAGAATAGAGAACAGAGTGAAAAGTTGA

Protein sequence

MAVHHLPWAVNGGRPTEIAARITCATNATPKVKLSHFKKWVSEVGSKSLKLALSSSLAIALSYNGVEYAEAKTGVNKPELLPKEYTTVIDVAGFLSSGQEKRLAEEVADLEKDTGFKLRILAQNYPDTPGLAIKDYWQVDDRTIVFVADPTFGNILNFNVGDQVDLDIPRSFWSRLAGKYGNIFYWKEKGEDASIEAAVNAISYCLREPVGPSNCSEEKFEESIKHGEEHFHKVNVMNTFCSFLVWVLVCLSLLLTFFSRKSKHLFKARIENRVKS

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo14484.1	Spo14484.1	mRNA

Homology

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BLAST of Spo14484.1 vs. NCBI nr
Match: gi|902195195|gb|KNA12771.1| (hypothetical protein SOVF_122910 [Spinacia oleracea])

HSP 1 Score: 444.9 bits (1143), Expect = 1.000e-121
Identity = 216/217 (99.54%), Postives = 217/217 (100.00%), Query Frame = 1

		  
Query: 1   MAVHHLPWAVNGGRPTEIAARITCATNATPKVKLSHFKKWVSEVGSKSLKLALSSSLAIA 60
           MAVHHLPWAVNGGRPTEIAARITCATNATPKVKLSH+KKWVSEVGSKSLKLALSSSLAIA
Sbjct: 1   MAVHHLPWAVNGGRPTEIAARITCATNATPKVKLSHYKKWVSEVGSKSLKLALSSSLAIA 60

Query: 61  LSYNGVEYAEAKTGVNKPELLPKEYTTVIDVAGFLSSGQEKRLAEEVADLEKDTGFKLRI 120
           LSYNGVEYAEAKTGVNKPELLPKEYTTVIDVAGFLSSGQEKRLAEEVADLEKDTGFKLRI
Sbjct: 61  LSYNGVEYAEAKTGVNKPELLPKEYTTVIDVAGFLSSGQEKRLAEEVADLEKDTGFKLRI 120

Query: 121 LAQNYPDTPGLAIKDYWQVDDRTIVFVADPTFGNILNFNVGDQVDLDIPRSFWSRLAGKY 180
           LAQNYPDTPGLAIKDYWQVDDRTIVFVADPTFGNILNFNVGDQVDLDIPRSFWSRLAGKY
Sbjct: 121 LAQNYPDTPGLAIKDYWQVDDRTIVFVADPTFGNILNFNVGDQVDLDIPRSFWSRLAGKY 180

Query: 181 GNIFYWKEKGEDASIEAAVNAISYCLREPVGPSNCSE 218
           GNIFYWKEKGEDASIEAAVNAISYCLREPVGPSNCSE
Sbjct: 181 GNIFYWKEKGEDASIEAAVNAISYCLREPVGPSNCSE 217

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BLAST of Spo14484.1 vs. NCBI nr
Match: gi|731345692|ref|XP_010684052.1| (PREDICTED: thylakoid lumenal 15.0 kDa protein 2, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 364.4 bits (934), Expect = 1.800e-97
Identity = 182/222 (81.98%), Postives = 198/222 (89.19%), Query Frame = 1

		  
Query: 1   MAVHHLPWAVNGGR--PTEIAARITCATNATPKVKLSHFKKWVSEVGSKSLKLALSSSLA 60
           MAV HLPW V+  R  P+ IAA+IT A          HF+ WVS+VGS S+KLALS+SLA
Sbjct: 1   MAVCHLPWVVHATRLRPSSIAAKITPAI---------HFRNWVSQVGSNSVKLALSTSLA 60

Query: 61  IALSYNGVEYAEA-KTGVNKPELLPKEYTTVIDVAGFLSSGQEKRLAEEVADLEKDTGFK 120
           +ALS+ GVE+AEA K GVNKPELLPKEYTTVIDVAGFLSSGQEKRLAEE+A+LE+DTGFK
Sbjct: 61  LALSFTGVEHAEAAKMGVNKPELLPKEYTTVIDVAGFLSSGQEKRLAEEIAELERDTGFK 120

Query: 121 LRILAQNYPDTPGLAIKDYWQVDDRTIVFVADPTFGNILNFNVGDQVDLDIPRSFWSRLA 180
           LRILAQNYPDTPGLAIKD+WQVDDRTIVFVADPTFGNILNFNVGDQVDLDIPRSFWSRLA
Sbjct: 121 LRILAQNYPDTPGLAIKDFWQVDDRTIVFVADPTFGNILNFNVGDQVDLDIPRSFWSRLA 180

Query: 181 GKYGNIFYWKEKGEDASIEAAVNAISYCLREPVGPSNCSEEK 220
           GKYGNIFYWKEKGEDASIEAAVNAI+YCL+EPVGPSNCSE K
Sbjct: 181 GKYGNIFYWKEKGEDASIEAAVNAITYCLKEPVGPSNCSEVK 213

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BLAST of Spo14484.1 vs. NCBI nr
Match: gi|719993769|ref|XP_010253980.1| (PREDICTED: thylakoid lumenal 15.0 kDa protein 2, chloroplastic-like isoform X2 [Nelumbo nucifera])

HSP 1 Score: 318.5 bits (815), Expect = 1.100e-83
Identity = 157/206 (76.21%), Postives = 174/206 (84.47%), Query Frame = 1

		  
Query: 14  RPTEIAARITCATNATPKVKLSHFKKWVSEVGSKSLKLALSSSLAIALSYNGVEYAEAKT 73
           RP  I++ ++  TNA         KKWV++  SKSL  ALS +LA+ALS  GV   EAK 
Sbjct: 25  RPMTISSSLSSPTNAPA------LKKWVADFHSKSLNFALSGALALALSLTGVGSVEAKV 84

Query: 74  GVNKPELLPKEYTTVIDVAGFLSSGQEKRLAEEVADLEKDTGFKLRILAQNYPDTPGLAI 133
           GVNKPELLPKE++ VIDVAGFLS+GQEKRL +E+ADLE+DTGFKLRILAQNYPDTPGLAI
Sbjct: 85  GVNKPELLPKEFSPVIDVAGFLSAGQEKRLTQEIADLERDTGFKLRILAQNYPDTPGLAI 144

Query: 134 KDYWQVDDRTIVFVADPTFGNILNFNVGDQVDLDIPRSFWSRLAGKYGNIFYWKEKGEDA 193
           +D+WQVDDRTIVFVADPTFGNILNFNVG  VDLDIPRSFWSRLAGKYGN+FYWKEKGEDA
Sbjct: 145 RDFWQVDDRTIVFVADPTFGNILNFNVGASVDLDIPRSFWSRLAGKYGNMFYWKEKGEDA 204

Query: 194 SIEAAVNAISYCLREPVGPSNCSEEK 220
           SIEAAV AIS CLREPVGPSNCSE K
Sbjct: 205 SIEAAVMAISNCLREPVGPSNCSEVK 224

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BLAST of Spo14484.1 vs. NCBI nr
Match: gi|1021034032|gb|KZM91816.1| (hypothetical protein DCAR_020819 [Daucus carota subsp. sativus])

HSP 1 Score: 316.2 bits (809), Expect = 5.500e-83
Identity = 150/189 (79.37%), Postives = 166/189 (87.83%), Query Frame = 1

		  
Query: 29  TPKVKLSHFKKWVSEVGSKSLKLALSSSLAIALSYNGVEYAEAKTGVNKPELLPKEYTTV 88
           T +   SHF +W +   SKSL  ALS++LAI+LS +G+ YAEAK GVNKPELLPK +T V
Sbjct: 38  TTQQNSSHFTRWAAAFPSKSLSFALSATLAISLSLSGIGYAEAKVGVNKPELLPKNFTPV 97

Query: 89  IDVAGFLSSGQEKRLAEEVADLEKDTGFKLRILAQNYPDTPGLAIKDYWQVDDRTIVFVA 148
           IDVAGFLS GQE R+A+E+  +EKDTGFKLR+LAQNYPDTPGLAIKDYWQVDDRTIVFVA
Sbjct: 98  IDVAGFLSEGQENRIAQEITAIEKDTGFKLRVLAQNYPDTPGLAIKDYWQVDDRTIVFVA 157

Query: 149 DPTFGNILNFNVGDQVDLDIPRSFWSRLAGKYGNIFYWKEKGEDASIEAAVNAISYCLRE 208
           DPTFGNILNFNVGD VDLDIPRSFWSRLAGKYGN+FYWKEKGEDASIEAAV AIS CLRE
Sbjct: 158 DPTFGNILNFNVGDLVDLDIPRSFWSRLAGKYGNMFYWKEKGEDASIEAAVMAISNCLRE 217

Query: 209 PVGPSNCSE 218
           PVGP+NCSE
Sbjct: 218 PVGPNNCSE 226

[Close]

BLAST of Spo14484.1 vs. NCBI nr
Match: gi|1000965807|ref|XP_015574837.1| (PREDICTED: thylakoid lumenal 15.0 kDa protein 2, chloroplastic [Ricinus communis])

HSP 1 Score: 316.2 bits (809), Expect = 5.500e-83
Identity = 150/198 (75.76%), Postives = 170/198 (85.86%), Query Frame = 1

		  
Query: 22  ITCATNATPKVKLSHFKKWVSEVGSKSLKLALSSSLAIALSYNGVEYAEAKTGVNKPELL 81
           +T ++   P    + F  WV +  SK+LK  LS +L + LS +GVE+AEAK GVNKPELL
Sbjct: 25  VTASSPIFPIQNSTKFSNWVVDFRSKTLKFLLSGALTLGLSLSGVEFAEAKVGVNKPELL 84

Query: 82  PKEYTTVIDVAGFLSSGQEKRLAEEVADLEKDTGFKLRILAQNYPDTPGLAIKDYWQVDD 141
           PKE+TTVIDVAGFLS GQEKRLA+E+ D+EKDTGFKLR+LAQNYPDTPGLAIKD+W+VDD
Sbjct: 85  PKEFTTVIDVAGFLSDGQEKRLAQEIQDIEKDTGFKLRVLAQNYPDTPGLAIKDFWRVDD 144

Query: 142 RTIVFVADPTFGNILNFNVGDQVDLDIPRSFWSRLAGKYGNIFYWKEKGEDASIEAAVNA 201
           RTIVFVADPTFGNILNFNVG  +DLDIPRSFWSRLAGKYGNIFYWKEKGEDASIE+AV A
Sbjct: 145 RTIVFVADPTFGNILNFNVGASIDLDIPRSFWSRLAGKYGNIFYWKEKGEDASIESAVMA 204

Query: 202 ISYCLREPVGPSNCSEEK 220
           IS CLREPVGP+NCSE K
Sbjct: 205 ISNCLREPVGPNNCSEVK 222

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BLAST of Spo14484.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QZT4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_122910 PE=4 SV=1)

HSP 1 Score: 444.9 bits (1143), Expect = 7.200e-122
Identity = 216/217 (99.54%), Postives = 217/217 (100.00%), Query Frame = 1

		  
Query: 1   MAVHHLPWAVNGGRPTEIAARITCATNATPKVKLSHFKKWVSEVGSKSLKLALSSSLAIA 60
           MAVHHLPWAVNGGRPTEIAARITCATNATPKVKLSH+KKWVSEVGSKSLKLALSSSLAIA
Sbjct: 1   MAVHHLPWAVNGGRPTEIAARITCATNATPKVKLSHYKKWVSEVGSKSLKLALSSSLAIA 60

Query: 61  LSYNGVEYAEAKTGVNKPELLPKEYTTVIDVAGFLSSGQEKRLAEEVADLEKDTGFKLRI 120
           LSYNGVEYAEAKTGVNKPELLPKEYTTVIDVAGFLSSGQEKRLAEEVADLEKDTGFKLRI
Sbjct: 61  LSYNGVEYAEAKTGVNKPELLPKEYTTVIDVAGFLSSGQEKRLAEEVADLEKDTGFKLRI 120

Query: 121 LAQNYPDTPGLAIKDYWQVDDRTIVFVADPTFGNILNFNVGDQVDLDIPRSFWSRLAGKY 180
           LAQNYPDTPGLAIKDYWQVDDRTIVFVADPTFGNILNFNVGDQVDLDIPRSFWSRLAGKY
Sbjct: 121 LAQNYPDTPGLAIKDYWQVDDRTIVFVADPTFGNILNFNVGDQVDLDIPRSFWSRLAGKY 180

Query: 181 GNIFYWKEKGEDASIEAAVNAISYCLREPVGPSNCSE 218
           GNIFYWKEKGEDASIEAAVNAISYCLREPVGPSNCSE
Sbjct: 181 GNIFYWKEKGEDASIEAAVNAISYCLREPVGPSNCSE 217

[Close]

BLAST of Spo14484.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BYB6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g161650 PE=4 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 1.200e-97
Identity = 182/222 (81.98%), Postives = 198/222 (89.19%), Query Frame = 1

		  
Query: 1   MAVHHLPWAVNGGR--PTEIAARITCATNATPKVKLSHFKKWVSEVGSKSLKLALSSSLA 60
           MAV HLPW V+  R  P+ IAA+IT A          HF+ WVS+VGS S+KLALS+SLA
Sbjct: 1   MAVCHLPWVVHATRLRPSSIAAKITPAI---------HFRNWVSQVGSNSVKLALSTSLA 60

Query: 61  IALSYNGVEYAEA-KTGVNKPELLPKEYTTVIDVAGFLSSGQEKRLAEEVADLEKDTGFK 120
           +ALS+ GVE+AEA K GVNKPELLPKEYTTVIDVAGFLSSGQEKRLAEE+A+LE+DTGFK
Sbjct: 61  LALSFTGVEHAEAAKMGVNKPELLPKEYTTVIDVAGFLSSGQEKRLAEEIAELERDTGFK 120

Query: 121 LRILAQNYPDTPGLAIKDYWQVDDRTIVFVADPTFGNILNFNVGDQVDLDIPRSFWSRLA 180
           LRILAQNYPDTPGLAIKD+WQVDDRTIVFVADPTFGNILNFNVGDQVDLDIPRSFWSRLA
Sbjct: 121 LRILAQNYPDTPGLAIKDFWQVDDRTIVFVADPTFGNILNFNVGDQVDLDIPRSFWSRLA 180

Query: 181 GKYGNIFYWKEKGEDASIEAAVNAISYCLREPVGPSNCSEEK 220
           GKYGNIFYWKEKGEDASIEAAVNAI+YCL+EPVGPSNCSE K
Sbjct: 181 GKYGNIFYWKEKGEDASIEAAVNAITYCLKEPVGPSNCSEVK 213

[Close]

BLAST of Spo14484.1 vs. UniProtKB/TrEMBL
Match: A0A164WIG1_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_020819 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 3.900e-83
Identity = 150/189 (79.37%), Postives = 166/189 (87.83%), Query Frame = 1

		  
Query: 29  TPKVKLSHFKKWVSEVGSKSLKLALSSSLAIALSYNGVEYAEAKTGVNKPELLPKEYTTV 88
           T +   SHF +W +   SKSL  ALS++LAI+LS +G+ YAEAK GVNKPELLPK +T V
Sbjct: 38  TTQQNSSHFTRWAAAFPSKSLSFALSATLAISLSLSGIGYAEAKVGVNKPELLPKNFTPV 97

Query: 89  IDVAGFLSSGQEKRLAEEVADLEKDTGFKLRILAQNYPDTPGLAIKDYWQVDDRTIVFVA 148
           IDVAGFLS GQE R+A+E+  +EKDTGFKLR+LAQNYPDTPGLAIKDYWQVDDRTIVFVA
Sbjct: 98  IDVAGFLSEGQENRIAQEITAIEKDTGFKLRVLAQNYPDTPGLAIKDYWQVDDRTIVFVA 157

Query: 149 DPTFGNILNFNVGDQVDLDIPRSFWSRLAGKYGNIFYWKEKGEDASIEAAVNAISYCLRE 208
           DPTFGNILNFNVGD VDLDIPRSFWSRLAGKYGN+FYWKEKGEDASIEAAV AIS CLRE
Sbjct: 158 DPTFGNILNFNVGDLVDLDIPRSFWSRLAGKYGNMFYWKEKGEDASIEAAVMAISNCLRE 217

Query: 209 PVGPSNCSE 218
           PVGP+NCSE
Sbjct: 218 PVGPNNCSE 226

[Close]

BLAST of Spo14484.1 vs. UniProtKB/TrEMBL
Match: B9S0H8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1355040 PE=4 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 8.600e-83
Identity = 149/196 (76.02%), Postives = 169/196 (86.22%), Query Frame = 1

		  
Query: 22  ITCATNATPKVKLSHFKKWVSEVGSKSLKLALSSSLAIALSYNGVEYAEAKTGVNKPELL 81
           +T ++   P    + F  WV +  SK+LK  LS +L + LS +GVE+AEAK GVNKPELL
Sbjct: 25  VTASSPIFPIQNSTKFSNWVVDFRSKTLKFLLSGALTLGLSLSGVEFAEAKVGVNKPELL 84

Query: 82  PKEYTTVIDVAGFLSSGQEKRLAEEVADLEKDTGFKLRILAQNYPDTPGLAIKDYWQVDD 141
           PKE+TTVIDVAGFLS GQEKRLA+E+ D+EKDTGFKLR+LAQNYPDTPGLAIKD+W+VDD
Sbjct: 85  PKEFTTVIDVAGFLSDGQEKRLAQEIQDIEKDTGFKLRVLAQNYPDTPGLAIKDFWRVDD 144

Query: 142 RTIVFVADPTFGNILNFNVGDQVDLDIPRSFWSRLAGKYGNIFYWKEKGEDASIEAAVNA 201
           RTIVFVADPTFGNILNFNVG  +DLDIPRSFWSRLAGKYGNIFYWKEKGEDASIE+AV A
Sbjct: 145 RTIVFVADPTFGNILNFNVGASIDLDIPRSFWSRLAGKYGNIFYWKEKGEDASIESAVMA 204

Query: 202 ISYCLREPVGPSNCSE 218
           IS CLREPVGP+NCSE
Sbjct: 205 ISNCLREPVGPNNCSE 220

[Close]

BLAST of Spo14484.1 vs. UniProtKB/TrEMBL
Match: A9PJV2_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 8.600e-83
Identity = 155/214 (72.43%), Postives = 175/214 (81.78%), Query Frame = 1

		  
Query: 15  PTEIAARITCATNATP-KVKLSH--------FKKWVSEVGSKSLKLALSSSLAIALSYNG 74
           P+ +A + TC +  TP  + +S         F KWV +  SKSL  A S +LA+ LS  G
Sbjct: 7   PSSLALKTTCRSALTPVPITVSSRPIQNPAKFTKWVLDFRSKSLNFAFSGALALGLSLPG 66

Query: 75  VEYAEAKTGVNKPELLPKEYTTVIDVAGFLSSGQEKRLAEEVADLEKDTGFKLRILAQNY 134
           V  A+AK GVNKPELLPKE+TTVIDVAGFLS GQEKRLAEE++D+EKDTGFKLR+LAQNY
Sbjct: 67  VGVADAKVGVNKPELLPKEFTTVIDVAGFLSDGQEKRLAEEISDIEKDTGFKLRVLAQNY 126

Query: 135 PDTPGLAIKDYWQVDDRTIVFVADPTFGNILNFNVGDQVDLDIPRSFWSRLAGKYGNIFY 194
           PDTPGLAI+D+WQVDDRT+VFVADP FGNILNFNVG  VDLDIPRSFWSRLAGKYGN+FY
Sbjct: 127 PDTPGLAIRDFWQVDDRTVVFVADPNFGNILNFNVGASVDLDIPRSFWSRLAGKYGNMFY 186

Query: 195 WKEKGEDASIEAAVNAISYCLREPVGPSNCSEEK 220
           WKEKGEDASIEAAV AIS CLREPVGP+NCSE K
Sbjct: 187 WKEKGEDASIEAAVMAISSCLREPVGPNNCSEVK 220

[Close]

BLAST of Spo14484.1 vs. ExPASy Swiss-Prot
Match: TL15B_ARATH (Thylakoid lumenal 15.0 kDa protein 2, chloroplastic OS=Arabidopsis thaliana GN=At5g52970 PE=1 SV=2)

HSP 1 Score: 297.7 bits (761), Expect = 1.300e-79
Identity = 142/180 (78.89%), Postives = 160/180 (88.89%), Query Frame = 1

		  
Query: 38  KKWVSEVGSKSLKLALSSSLAIALSYNGVEYAEAKTGVNKPELLPKEYTTVIDVAGFLSS 97
           + WVS   SKSL L  S +LA+ LS +GV +A+AK GVNKPELLPKE+T+VIDVA FLS+
Sbjct: 42  ENWVSRFRSKSLSLVFSGALALGLSLSGVGFADAKVGVNKPELLPKEFTSVIDVADFLSN 101

Query: 98  GQEKRLAEEVADLEKDTGFKLRILAQNYPDTPGLAIKDYWQVDDRTIVFVADPTFGNILN 157
           GQEKR+A+E+A+LEKDTGFKLR+LAQNYP TPGLAIKD+WQVDD TIVFVADPTFGNILN
Sbjct: 102 GQEKRIAQEIANLEKDTGFKLRVLAQNYPVTPGLAIKDFWQVDDSTIVFVADPTFGNILN 161

Query: 158 FNVGDQVDLDIPRSFWSRLAGKYGNIFYWKEKGEDASIEAAVNAISYCLREPVGPSNCSE 217
           FNVG  VDLDIPRSFWSRLAGKYGN+FYWKEKGEDASIEAAV AIS CLREPVG +NC+E
Sbjct: 162 FNVGATVDLDIPRSFWSRLAGKYGNMFYWKEKGEDASIEAAVMAISSCLREPVGRNNCAE 221

[Close]

BLAST of Spo14484.1 vs. TAIR (Arabidopsis)
Match: AT5G52970.1 (thylakoid lumen 15.0 kDa protein)

HSP 1 Score: 297.7 bits (761), Expect = 7.200e-81
Identity = 142/180 (78.89%), Postives = 160/180 (88.89%), Query Frame = 1

		  
Query: 38  KKWVSEVGSKSLKLALSSSLAIALSYNGVEYAEAKTGVNKPELLPKEYTTVIDVAGFLSS 97
           + WVS   SKSL L  S +LA+ LS +GV +A+AK GVNKPELLPKE+T+VIDVA FLS+
Sbjct: 42  ENWVSRFRSKSLSLVFSGALALGLSLSGVGFADAKVGVNKPELLPKEFTSVIDVADFLSN 101

Query: 98  GQEKRLAEEVADLEKDTGFKLRILAQNYPDTPGLAIKDYWQVDDRTIVFVADPTFGNILN 157
           GQEKR+A+E+A+LEKDTGFKLR+LAQNYP TPGLAIKD+WQVDD TIVFVADPTFGNILN
Sbjct: 102 GQEKRIAQEIANLEKDTGFKLRVLAQNYPVTPGLAIKDFWQVDDSTIVFVADPTFGNILN 161

Query: 158 FNVGDQVDLDIPRSFWSRLAGKYGNIFYWKEKGEDASIEAAVNAISYCLREPVGPSNCSE 217
           FNVG  VDLDIPRSFWSRLAGKYGN+FYWKEKGEDASIEAAV AIS CLREPVG +NC+E
Sbjct: 162 FNVGATVDLDIPRSFWSRLAGKYGNMFYWKEKGEDASIEAAVMAISSCLREPVGRNNCAE 221

The following BLAST results are available for this feature:

BLAST of Spo14484.1 vs. NCBI nr
BLAST of Spo14484.1 vs. UniProtKB/TrEMBL
BLAST of Spo14484.1 vs. ExPASy Swiss-Prot
BLAST of Spo14484.1 vs. TAIR (Arabidopsis)

BLAST of Spo14484.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|902195195\|gb\|KNA12771.1\|	1.0e-121	99.5	hypothetical protein SOVF_1229...	[more]
gi\|731345692\|ref\|XP_010684052.1\|	1.8e-97	81.9	PREDICTED: thylakoid lumenal 1...	[more]
gi\|719993769\|ref\|XP_010253980.1\|	1.1e-83	76.2	PREDICTED: thylakoid lumenal 1...	[more]
gi\|1021034032\|gb\|KZM91816.1\|	5.5e-83	79.3	hypothetical protein DCAR_0208...	[more]
gi\|1000965807\|ref\|XP_015574837.1\|	5.5e-83	75.7	PREDICTED: thylakoid lumenal 1...	[more]

BLAST of Spo14484.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
A0A0K9QZT4_SPIOL	7.2e-122	99.5	Uncharacterized protein OS=Spi...	[more]
A0A0J8BYB6_BETVU	1.2e-97	81.9	Uncharacterized protein OS=Bet...	[more]
A0A164WIG1_DAUCA	3.9e-83	79.3	Uncharacterized protein OS=Dau...	[more]
B9S0H8_RICCO	8.6e-83	76.0	Putative uncharacterized prote...	[more]
A9PJV2_9ROSI	8.6e-83	72.4	Putative uncharacterized prote...	[more]

BLAST of Spo14484.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1

Position :

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x 1


Match Name	E-value	Identity	Description
TL15B_ARATH	1.3e-79	78.8	Thylakoid lumenal 15.0 kDa pro...	[more]

BLAST of Spo14484.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1

Position :

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x 1


Match Name	E-value	Identity	Description
AT5G52970.1	7.2e-81	78.8	thylakoid lumen 15.0 kDa prote...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007621	TPM domain	PFAM	PF04536	TPM_phosphatase	coord: 88..203 score: 2.
None	No IPR available	PANTHER	PTHR35514	FAMILY NOT NAMED	coord: 40..217 score: 2.2E
None	No IPR available	PANTHER	PTHR35514:SF1	THYLAKOID LUMENAL 15.0 KDA PROTEIN 2, CHLOROPLASTIC	coord: 40..217 score: 2.2E

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0006694	steroid biosynthetic process
biological_process	GO:0016117	carotenoid biosynthetic process
biological_process	GO:0052889	9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0006662	glycerol ether metabolic process
biological_process	GO:0006782	protoporphyrinogen IX biosynthetic process
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0016226	iron-sulfur cluster assembly
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0010228	vegetative to reproductive phase transition of meristem
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0006364	rRNA processing
biological_process	GO:0048481	plant ovule development
cellular_component	GO:0009509	chromoplast
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009536	plastid
cellular_component	GO:0009543	chloroplast thylakoid lumen
cellular_component	GO:0009570	chloroplast stroma
molecular_function	GO:0015035	protein disulfide oxidoreductase activity
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0004853	uroporphyrinogen decarboxylase activity
molecular_function	GO:0052887	7,9,9'-tricis-neurosporene:quinone oxidoreductase activity
molecular_function	GO:0052886	9,9'-dicis-carotene:quinone oxidoreductase activity
molecular_function	GO:0016719	carotene 7,8-desaturase activity
molecular_function	GO:0016788	hydrolase activity, acting on ester bonds

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo10388	0.70	Barchart \| Table
Spo02068	0.69	Barchart \| Table
Spo08680	0.68	Barchart \| Table
Spo19459	0.66	Barchart \| Table
Spo24590	0.65	Barchart \| Table