Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCATCGCGTCGCGCAGCACGTAGCTCCCGAGGCCTCGAAGGACCCCAAGTTGTCTCCCTTAACCGGGACGGCAAAACCGTTGCGACCCCAGGTCAGGCGGGGCTACCCGCTGAGTTTAAGCATATCAATAAGCGGAGGAGAAGAAACTTACAAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAACAGCCCAGCTTTAGAATCGGGCGGCTTCGCCATCCGAATTGTAGTCTGGAGAAGCGTCCTCTGCGGCGGACCGGGCCCAAGTCCCCTGGAAAGGGGCGCCAGAGAGGGTGAGAGCCCCGTCGTGCCCGGACCCTGTCGCACCACGAGGCGCTGTCGCCGAGTCGGGTTGTTTGGGAATGCAGCCCTAAGTGGGCGGTAA ATGCATCGCGTCGCGCAGCACGTAGCTCCCGAGGCCTCGAAGGACCCCAAGTTGTCTCCCTTAACCGGGACGGCAAAACCGTTGCGACCCCAGGTCAGGCGGGGCTACCCGCTGAGTTTAAGCATATCAATAAGCGGAGGAGAAGAAACTTACAAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAACAGCCCAGCTTTAGAATCGGGCGGCTTCGCCATCCGAATTGTAGTCTGGAGAAGCGTCCTCTGCGGCGGACCGGGCCCAAGTCCCCTGGAAAGGGGCGCCAGAGAGGGTGAGAGCCCCGTCGTGCCCGGACCCTGTCGCACCACGAGGCGCTGTCGCCGAGTCGGGTTGTTTGGGAATGCAGCCCTAAGTGGGCGGTAA ATGCATCGCGTCGCGCAGCACGTAGCTCCCGAGGCCTCGAAGGACCCCAAGTTGTCTCCCTTAACCGGGACGGCAAAACCGTTGCGACCCCAGGTCAGGCGGGGCTACCCGCTGAGTTTAAGCATATCAATAAGCGGAGGAGAAGAAACTTACAAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAACAGCCCAGCTTTAGAATCGGGCGGCTTCGCCATCCGAATTGTAGTCTGGAGAAGCGTCCTCTGCGGCGGACCGGGCCCAAGTCCCCTGGAAAGGGGCGCCAGAGAGGGTGAGAGCCCCGTCGTGCCCGGACCCTGTCGCACCACGAGGCGCTGTCGCCGAGTCGGGTTGTTTGGGAATGCAGCCCTAAGTGGGCGGTAA MHRVAQHVAPEASKDPKLSPLTGTAKPLRPQVRRGYPLSLSISISGGEETYKDSPSNGERTGNSPALESGGFAIRIVVWRSVLCGGPGPSPLERGAREGESPVVPGPCRTTRRCRRVGLFGNAALSGR Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo14548.1 vs. NCBI nr
Match: gi|870767542|gb|KMS65341.1| (hypothetical protein BVRB_036970, partial [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 140.2 bits (352), Expect = 2.500e-30 Identity = 67/74 (90.54%), Postives = 70/74 (94.59%), Query Frame = 1
BLAST of Spo14548.1 vs. NCBI nr
Match: gi|902148572|gb|KNA05259.1| (hypothetical protein SOVF_192120, partial [Spinacia oleracea]) HSP 1 Score: 113.6 bits (283), Expect = 2.500e-22 Identity = 51/57 (89.47%), Postives = 53/57 (92.98%), Query Frame = 1
BLAST of Spo14548.1 vs. NCBI nr
Match: gi|902159193|gb|KNA06308.1| (hypothetical protein SOVF_182180, partial [Spinacia oleracea]) HSP 1 Score: 95.5 bits (236), Expect = 7.100e-17 Identity = 52/80 (65.00%), Postives = 55/80 (68.75%), Query Frame = 1
BLAST of Spo14548.1 vs. NCBI nr
Match: gi|566211063|ref|XP_006372605.1| (hypothetical protein POPTR_0017s03170g [Populus trichocarpa]) HSP 1 Score: 72.8 bits (177), Expect = 4.900e-10 Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 1
BLAST of Spo14548.1 vs. NCBI nr
Match: gi|566185230|ref|XP_006380094.1| (hypothetical protein POPTR_0008s21830g [Populus trichocarpa]) HSP 1 Score: 72.8 bits (177), Expect = 4.900e-10 Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 1
BLAST of Spo14548.1 vs. UniProtKB/TrEMBL
Match: M1D9E9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400034963 PE=4 SV=1) HSP 1 Score: 180.6 bits (457), Expect = 1.200e-42 Identity = 89/100 (89.00%), Postives = 91/100 (91.00%), Query Frame = 1
BLAST of Spo14548.1 vs. UniProtKB/TrEMBL
Match: M1DS60_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400043107 PE=4 SV=1) HSP 1 Score: 151.4 bits (381), Expect = 7.600e-34 Identity = 73/94 (77.66%), Postives = 79/94 (84.04%), Query Frame = 1
BLAST of Spo14548.1 vs. UniProtKB/TrEMBL
Match: A0A0J7YP30_BETVU (Uncharacterized protein (Fragment) OS=Beta vulgaris subsp. vulgaris GN=BVRB_036970 PE=4 SV=1) HSP 1 Score: 140.2 bits (352), Expect = 1.800e-30 Identity = 67/74 (90.54%), Postives = 70/74 (94.59%), Query Frame = 1
BLAST of Spo14548.1 vs. UniProtKB/TrEMBL
Match: M0ZZR9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400004552 PE=4 SV=1) HSP 1 Score: 120.6 bits (301), Expect = 1.400e-24 Identity = 59/83 (71.08%), Postives = 65/83 (78.31%), Query Frame = 1
BLAST of Spo14548.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QDA8_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_192120 PE=4 SV=1) HSP 1 Score: 113.6 bits (283), Expect = 1.800e-22 Identity = 51/57 (89.47%), Postives = 53/57 (92.98%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo14548.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo14548.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo14548.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo14548.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 0
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
RNA-Seq Expression
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