Spo14548 (gene) | SpinachBase

Overview


Name	Spo14548
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	SpoScf_13822 : 582 .. 968 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATCGCGTCGCGCAGCACGTAGCTCCCGAGGCCTCGAAGGACCCCAAGTTGTCTCCCTTAACCGGGACGGCAAAACCGTTGCGACCCCAGGTCAGGCGGGGCTACCCGCTGAGTTTAAGCATATCAATAAGCGGAGGAGAAGAAACTTACAAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAACAGCCCAGCTTTAGAATCGGGCGGCTTCGCCATCCGAATTGTAGTCTGGAGAAGCGTCCTCTGCGGCGGACCGGGCCCAAGTCCCCTGGAAAGGGGCGCCAGAGAGGGTGAGAGCCCCGTCGTGCCCGGACCCTGTCGCACCACGAGGCGCTGTCGCCGAGTCGGGTTGTTTGGGAATGCAGCCCTAAGTGGGCGGTAA

mRNA sequence

ATGCATCGCGTCGCGCAGCACGTAGCTCCCGAGGCCTCGAAGGACCCCAAGTTGTCTCCCTTAACCGGGACGGCAAAACCGTTGCGACCCCAGGTCAGGCGGGGCTACCCGCTGAGTTTAAGCATATCAATAAGCGGAGGAGAAGAAACTTACAAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAACAGCCCAGCTTTAGAATCGGGCGGCTTCGCCATCCGAATTGTAGTCTGGAGAAGCGTCCTCTGCGGCGGACCGGGCCCAAGTCCCCTGGAAAGGGGCGCCAGAGAGGGTGAGAGCCCCGTCGTGCCCGGACCCTGTCGCACCACGAGGCGCTGTCGCCGAGTCGGGTTGTTTGGGAATGCAGCCCTAAGTGGGCGGTAA

Coding sequence (CDS)

ATGCATCGCGTCGCGCAGCACGTAGCTCCCGAGGCCTCGAAGGACCCCAAGTTGTCTCCCTTAACCGGGACGGCAAAACCGTTGCGACCCCAGGTCAGGCGGGGCTACCCGCTGAGTTTAAGCATATCAATAAGCGGAGGAGAAGAAACTTACAAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAACAGCCCAGCTTTAGAATCGGGCGGCTTCGCCATCCGAATTGTAGTCTGGAGAAGCGTCCTCTGCGGCGGACCGGGCCCAAGTCCCCTGGAAAGGGGCGCCAGAGAGGGTGAGAGCCCCGTCGTGCCCGGACCCTGTCGCACCACGAGGCGCTGTCGCCGAGTCGGGTTGTTTGGGAATGCAGCCCTAAGTGGGCGGTAA

Protein sequence

MHRVAQHVAPEASKDPKLSPLTGTAKPLRPQVRRGYPLSLSISISGGEETYKDSPSNGERTGNSPALESGGFAIRIVVWRSVLCGGPGPSPLERGAREGESPVVPGPCRTTRRCRRVGLFGNAALSGR

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo14548.1	Spo14548.1	mRNA

Homology

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BLAST of Spo14548.1 vs. NCBI nr
Match: gi|870767542|gb|KMS65341.1| (hypothetical protein BVRB_036970, partial [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 140.2 bits (352), Expect = 2.500e-30
Identity = 67/74 (90.54%), Postives = 70/74 (94.59%), Query Frame = 1

		  
Query: 32  VRRGYPLSLSISISGGEETYKDSPSNGERTGNSPALESGGFAIRIVVWRSVLCGGPGPSP 91
           VRRG+PLSLSISISGG+ETYKDSPSNGERTGNSPALESGG A+RIVVWRSVLCGGPGPSP
Sbjct: 1   VRRGHPLSLSISISGGKETYKDSPSNGERTGNSPALESGGLAVRIVVWRSVLCGGPGPSP 60

Query: 92  LERGAREGESPVVP 106
           LE  AREGESPV P
Sbjct: 61  LEWDAREGESPVAP 74

[Close]

BLAST of Spo14548.1 vs. NCBI nr
Match: gi|902148572|gb|KNA05259.1| (hypothetical protein SOVF_192120, partial [Spinacia oleracea])

HSP 1 Score: 113.6 bits (283), Expect = 2.500e-22
Identity = 51/57 (89.47%), Postives = 53/57 (92.98%), Query Frame = 1

		  
Query: 69  SGGFAIRIVVWRSVLCGGPGPSPLERGAREGESPVVPGPCRTTRRCRRVGLFGNAAL 126
           SGGF +RIVVWRSVLCGGP PS LERGAREGESP+VPGPC TTRRCRRVGLFGNAAL
Sbjct: 1   SGGFTVRIVVWRSVLCGGPSPSALERGAREGESPIVPGPCHTTRRCRRVGLFGNAAL 57

[Close]

BLAST of Spo14548.1 vs. NCBI nr
Match: gi|902159193|gb|KNA06308.1| (hypothetical protein SOVF_182180, partial [Spinacia oleracea])

HSP 1 Score: 95.5 bits (236), Expect = 7.100e-17
Identity = 52/80 (65.00%), Postives = 55/80 (68.75%), Query Frame = 1

		  
Query: 1  MHRVAQHVAPEASKDPKLSPLTGTAKPLRPQVRRGYPLSLSISISGGEETYKDSPSNGER 60
          MHRVAQHVA EASKDP +  L    K +            SISISGGEETYK SPSNGER
Sbjct: 1  MHRVAQHVASEASKDPNVISLNWDGKTVX-----------SISISGGEETYKHSPSNGER 60

Query: 61 TGNSPALESGGFAIRIVVWR 81
           GN PALESG FA+RIVVWR
Sbjct: 61 AGNIPALESGDFAVRIVVWR 69

[Close]

BLAST of Spo14548.1 vs. NCBI nr
Match: gi|566211063|ref|XP_006372605.1| (hypothetical protein POPTR_0017s03170g [Populus trichocarpa])

HSP 1 Score: 72.8 bits (177), Expect = 4.900e-10
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 1

		  
Query: 28  LRPQVRRGYPLSLSISISGGEETYKDSPSNGERTGNSPA 67
           LRPQVRR YPLSLSISISGG+ETYKDSPSNGERTG  PA
Sbjct: 112 LRPQVRRDYPLSLSISISGGKETYKDSPSNGERTGKCPA 150

[Close]

BLAST of Spo14548.1 vs. NCBI nr
Match: gi|566185230|ref|XP_006380094.1| (hypothetical protein POPTR_0008s21830g [Populus trichocarpa])

HSP 1 Score: 72.8 bits (177), Expect = 4.900e-10
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 1

		  
Query: 28  LRPQVRRGYPLSLSISISGGEETYKDSPSNGERTGNSPA 67
           LRPQVRR YPLSLSISISGG+ETYKDSPSNGERTG  PA
Sbjct: 112 LRPQVRRDYPLSLSISISGGKETYKDSPSNGERTGKCPA 150

[Close]

BLAST of Spo14548.1 vs. UniProtKB/TrEMBL
Match: M1D9E9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400034963 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.200e-42
Identity = 89/100 (89.00%), Postives = 91/100 (91.00%), Query Frame = 1

		  
Query: 29  RPQVRRGYPLSLSISISGGEETYKDSPSNGERTGNSPALESGGFAIRIVVWRSVLCGGPG 88
           RPQVRR YPLSLSISISGG+ETYKDS SNGERTGNSPALESGG  +RIVVWRSVL GGPG
Sbjct: 110 RPQVRRDYPLSLSISISGGKETYKDSLSNGERTGNSPALESGGSVVRIVVWRSVLSGGPG 169

Query: 89  PSPLERGAREGESPVVPGPCRTTRRCRRVGLFGNAALSGR 129
           PSPLE GAREGESPVVPGPCRTTRRC RVGLFGNAA  GR
Sbjct: 170 PSPLEGGAREGESPVVPGPCRTTRRCLRVGLFGNAAQIGR 209

[Close]

BLAST of Spo14548.1 vs. UniProtKB/TrEMBL
Match: M1DS60_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400043107 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 7.600e-34
Identity = 73/94 (77.66%), Postives = 79/94 (84.04%), Query Frame = 1

		  
Query: 32  VRRGYPLSLSISISGGEETYKDSPSNGERTGNSPALESGGFAIRIVVWRSVLCGGPGPSP 91
           VRR YPLSLSISISGG+ETYKDS SNGE  GN+P LESGG  +RIV+WRS+L GG GP P
Sbjct: 30  VRRDYPLSLSISISGGKETYKDSLSNGELIGNNPTLESGGSIVRIVLWRSILSGGSGPCP 89

Query: 92  LERGAREGESPVVPGPCRTTRRCRRVGLFGNAAL 126
           LE  AREG+SPVVPGPC TTRRC RVGLFGNA L
Sbjct: 90  LEGDAREGDSPVVPGPCHTTRRCLRVGLFGNATL 123

[Close]

BLAST of Spo14548.1 vs. UniProtKB/TrEMBL
Match: A0A0J7YP30_BETVU (Uncharacterized protein (Fragment) OS=Beta vulgaris subsp. vulgaris GN=BVRB_036970 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.800e-30
Identity = 67/74 (90.54%), Postives = 70/74 (94.59%), Query Frame = 1

		  
Query: 32  VRRGYPLSLSISISGGEETYKDSPSNGERTGNSPALESGGFAIRIVVWRSVLCGGPGPSP 91
           VRRG+PLSLSISISGG+ETYKDSPSNGERTGNSPALESGG A+RIVVWRSVLCGGPGPSP
Sbjct: 1   VRRGHPLSLSISISGGKETYKDSPSNGERTGNSPALESGGLAVRIVVWRSVLCGGPGPSP 60

Query: 92  LERGAREGESPVVP 106
           LE  AREGESPV P
Sbjct: 61  LEWDAREGESPVAP 74

[Close]

BLAST of Spo14548.1 vs. UniProtKB/TrEMBL
Match: M0ZZR9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400004552 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.400e-24
Identity = 59/83 (71.08%), Postives = 65/83 (78.31%), Query Frame = 1

		  
Query: 46  GGEETYKDSPSNGERTGNSPALESGGFAIRIVVWRSVLCGGPGPSPLERGAREGESPVVP 105
           GG+ETYKDS SNGE  GN+  LESGG  +RIV+WRSVL GG GP PLE  AREG+S VVP
Sbjct: 288 GGKETYKDSLSNGELIGNNTTLESGGSIVRIVLWRSVLSGGSGPCPLEGDAREGDSLVVP 347

Query: 106 GPCRTTRRCRRVGLFGNAALSGR 129
           GPC TTRRC RVGLFGNA  + R
Sbjct: 348 GPCHTTRRCLRVGLFGNATQNRR 370

[Close]

BLAST of Spo14548.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QDA8_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_192120 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.800e-22
Identity = 51/57 (89.47%), Postives = 53/57 (92.98%), Query Frame = 1

		  
Query: 69  SGGFAIRIVVWRSVLCGGPGPSPLERGAREGESPVVPGPCRTTRRCRRVGLFGNAAL 126
           SGGF +RIVVWRSVLCGGP PS LERGAREGESP+VPGPC TTRRCRRVGLFGNAAL
Sbjct: 1   SGGFTVRIVVWRSVLCGGPSPSALERGAREGESPIVPGPCHTTRRCRRVGLFGNAAL 57

The following BLAST results are available for this feature:

BLAST of Spo14548.1 vs. NCBI nr
BLAST of Spo14548.1 vs. UniProtKB/TrEMBL
BLAST of Spo14548.1 vs. ExPASy Swiss-Prot
BLAST of Spo14548.1 vs. TAIR (Arabidopsis)

BLAST of Spo14548.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|870767542\|gb\|KMS65341.1\|	2.5e-30	90.5	hypothetical protein BVRB_0369...	[more]
gi\|902148572\|gb\|KNA05259.1\|	2.5e-22	89.4	hypothetical protein SOVF_1921...	[more]
gi\|902159193\|gb\|KNA06308.1\|	7.1e-17	65.0	hypothetical protein SOVF_1821...	[more]
gi\|566211063\|ref\|XP_006372605.1\|	4.9e-10	89.7	hypothetical protein POPTR_001...	[more]
gi\|566185230\|ref\|XP_006380094.1\|	4.9e-10	89.7	hypothetical protein POPTR_000...	[more]

BLAST of Spo14548.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
M1D9E9_SOLTU	1.2e-42	89.0	Uncharacterized protein OS=Sol...	[more]
M1DS60_SOLTU	7.6e-34	77.6	Uncharacterized protein OS=Sol...	[more]
A0A0J7YP30_BETVU	1.8e-30	90.5	Uncharacterized protein (Fragm...	[more]
M0ZZR9_SOLTU	1.4e-24	71.0	Uncharacterized protein OS=Sol...	[more]
A0A0K9QDA8_SPIOL	1.8e-22	89.4	Uncharacterized protein (Fragm...	[more]

BLAST of Spo14548.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo14548.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

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x 1


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33220	FAMILY NOT NAMED	coord: 27..66 score: 1.8
None	No IPR available	PANTHER	PTHR33220:SF1	SUBFAMILY NOT NAMED	coord: 27..66 score: 1.8

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo16598	0.69	Barchart \| Table