Spo14707 (gene) | SpinachBase

Overview


Name	Spo14707
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	RING finger family protein
Location	chr6 : 35995657 .. 35996178 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATTTCCGGCAGGATACACGGAGGTGCTCCTCCCTAAACTCCTCCTCACCACCCTCTCACTCTTAGGCTTCGTCCGCAAGCTCGTCCTCTCTCTCCTCCGCCTCCTCGGCCTCTCTTCCTTCGTCGAGCCCGGCAATGAACTCGACCAGCCCGAACCCGGCCCGATACACGGTATCTCCTCTGCTGGCGCCCTCATCCGCGAGATGCTACCCGCCGTCACATACGCTGAGATCCTCGCACTCGCCGGGCCCGAAGAGTCCGACCTGCCTGAGGGTTGCGCGGTTTGTCTGTATGAGTTTGAGGAAGAAGACGAGATCCGACGGATGAGGAATTGCCGGCACATGTTCCACCGGTGCTGTGTGGACCGTTGGATCGACCATGATCGAAAGACATGCCCGCTATGTAGGAAGCCATTTGTGCCAGACGAATTGCAGGAAGATTTCAATGAGAAGCTATGGGCTGCTTCTGGCATCCCTGATTTTTACTCTGAATATTCCCCTATCACCAATTTCTTGTAG

mRNA sequence

ATGGGATTTCCGGCAGGATACACGGAGGTGCTCCTCCCTAAACTCCTCCTCACCACCCTCTCACTCTTAGGCTTCGTCCGCAAGCTCGTCCTCTCTCTCCTCCGCCTCCTCGGCCTCTCTTCCTTCGTCGAGCCCGGCAATGAACTCGACCAGCCCGAACCCGGCCCGATACACGGTATCTCCTCTGCTGGCGCCCTCATCCGCGAGATGCTACCCGCCGTCACATACGCTGAGATCCTCGCACTCGCCGGGCCCGAAGAGTCCGACCTGCCTGAGGGTTGCGCGGTTTGTCTGTATGAGTTTGAGGAAGAAGACGAGATCCGACGGATGAGGAATTGCCGGCACATGTTCCACCGGTGCTGTGTGGACCGTTGGATCGACCATGATCGAAAGACATGCCCGCTATGTAGGAAGCCATTTGTGCCAGACGAATTGCAGGAAGATTTCAATGAGAAGCTATGGGCTGCTTCTGGCATCCCTGATTTTTACTCTGAATATTCCCCTATCACCAATTTCTTGTAG

Coding sequence (CDS)

ATGGGATTTCCGGCAGGATACACGGAGGTGCTCCTCCCTAAACTCCTCCTCACCACCCTCTCACTCTTAGGCTTCGTCCGCAAGCTCGTCCTCTCTCTCCTCCGCCTCCTCGGCCTCTCTTCCTTCGTCGAGCCCGGCAATGAACTCGACCAGCCCGAACCCGGCCCGATACACGGTATCTCCTCTGCTGGCGCCCTCATCCGCGAGATGCTACCCGCCGTCACATACGCTGAGATCCTCGCACTCGCCGGGCCCGAAGAGTCCGACCTGCCTGAGGGTTGCGCGGTTTGTCTGTATGAGTTTGAGGAAGAAGACGAGATCCGACGGATGAGGAATTGCCGGCACATGTTCCACCGGTGCTGTGTGGACCGTTGGATCGACCATGATCGAAAGACATGCCCGCTATGTAGGAAGCCATTTGTGCCAGACGAATTGCAGGAAGATTTCAATGAGAAGCTATGGGCTGCTTCTGGCATCCCTGATTTTTACTCTGAATATTCCCCTATCACCAATTTCTTGTAG

Protein sequence

MGFPAGYTEVLLPKLLLTTLSLLGFVRKLVLSLLRLLGLSSFVEPGNELDQPEPGPIHGISSAGALIREMLPAVTYAEILALAGPEESDLPEGCAVCLYEFEEEDEIRRMRNCRHMFHRCCVDRWIDHDRKTCPLCRKPFVPDELQEDFNEKLWAASGIPDFYSEYSPITNFL

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo14707.1	Spo14707.1	mRNA

Homology

[Close]

BLAST of Spo14707.1 vs. NCBI nr
Match: gi|902197333|gb|KNA13391.1| (hypothetical protein SOVF_117460 [Spinacia oleracea])

HSP 1 Score: 350.9 bits (899), Expect = 1.300e-93
Identity = 172/176 (97.73%), Postives = 173/176 (98.30%), Query Frame = 1


		  
Query: 1   MGFPAGYTEVLLPKLLLTTLSLLGFVRKLVLSLLRLLGLSSFVEPGNELDQPEPGPIHGI 60
           MGFPAGYTEVLLPKLLLTTLSLLGFVRKLVLSLLRLLGLSSFVEPGNELDQPEPGPIHGI
Sbjct: 1   MGFPAGYTEVLLPKLLLTTLSLLGFVRKLVLSLLRLLGLSSFVEPGNELDQPEPGPIHGI 60

Query: 61  SSAGALIREMLPAVTYAEILALAG---PEESDLPEGCAVCLYEFEEEDEIRRMRNCRHMF 120
           SSAGALIREMLPAVTYAEILALAG   PEESDLPEGCAVCLYEFEEEDEIRRMRNCRHMF
Sbjct: 61  SSAGALIREMLPAVTYAEILALAGPFGPEESDLPEGCAVCLYEFEEEDEIRRMRNCRHMF 120

Query: 121 HRCCVDRWIDHDRKTCPLCRKPFVPDELQEDFNEKLWAASGIPDFYSEYSPITNFL 174
           HRCCVDRWIDHDRKTCPLCRKPFVP+ELQEDFNEKLWAASGIPDFYSEYSPITNFL
Sbjct: 121 HRCCVDRWIDHDRKTCPLCRKPFVPEELQEDFNEKLWAASGIPDFYSEYSPITNFL 176

[Close]

BLAST of Spo14707.1 vs. NCBI nr
Match: gi|870860759|gb|KMT12067.1| (hypothetical protein BVRB_5g100240 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 285.8 bits (730), Expect = 5.000e-74
Identity = 141/175 (80.57%), Postives = 151/175 (86.29%), Query Frame = 1


		  
Query: 1   MGFPAGYTEVLLPKLLLTTLSLLGFVRKLVLSLLRLLGLSSFVEPGNEL--DQPEPGPIH 60
           MGFPAGYTEVLLPKL LT LSLLGF+RK VLSLLRLLGL+S +EP + L  D PEPGP  
Sbjct: 1   MGFPAGYTEVLLPKLFLTALSLLGFLRKSVLSLLRLLGLASLIEPASPLEHDHPEPGPAL 60

Query: 61  GISSAGALIREMLPAVTYAEILALAGPEESDLPEGCAVCLYEFEEEDEIRRMRNCRHMFH 120
             SSA ALIREMLPAVTYAE +A AGP+E    E CAVCL+E+E +DE+RRMRNCRHMFH
Sbjct: 61  SESSAAALIREMLPAVTYAEAIA-AGPDEPGPAESCAVCLHEYESDDEVRRMRNCRHMFH 120

Query: 121 RCCVDRWIDHDRKTCPLCRKPFVPDELQEDFNEKLWAASGIPDFYSEYSPITNFL 174
           RCCVDRWIDHDRKTCPLCRKP VP ELQEDFNEKLWAASGIPDFYSEYSPITNFL
Sbjct: 121 RCCVDRWIDHDRKTCPLCRKPLVPHELQEDFNEKLWAASGIPDFYSEYSPITNFL 174

[Close]

BLAST of Spo14707.1 vs. NCBI nr
Match: gi|674888727|emb|CDY43934.1| (BnaC04g21760D [Brassica napus])

HSP 1 Score: 211.1 bits (536), Expect = 1.600e-51
Identity = 103/174 (59.20%), Postives = 127/174 (72.99%), Query Frame = 1


		  
Query: 1   MGFPAGYTEVLLPKLLLTTLSLLGFVRKLVLSLLRLLGLSSFVEPGNELDQ--PEPGPIH 60
           MGFP GYTEV LPKL + TLS+L F+R +V SL R LGLS F+E           P  I 
Sbjct: 31  MGFPVGYTEVFLPKLFVQTLSILSFIRTVVFSLFRFLGLSDFLETDQTWPDYTSYPARIP 90

Query: 61  GISS--AGALIREMLPAVTYAEILALAGPEESDLPEGCAVCLYEFEEEDEIRRMRNCRHM 120
            + S  +  LIRE+LP + + E  A+      DLPE CAVCLYEFE E EIRR+RNCRH+
Sbjct: 91  ELPSPFSALLIREILPVIKFEE--AVTSSYGEDLPESCAVCLYEFEGEQEIRRLRNCRHI 150

Query: 121 FHRCCVDRWIDHDRKTCPLCRKPFVPDELQEDFNEKLWAASGIPDFYSEYSPIT 171
           FHR C+DRW+DHD+KTCPLCRKPFVPDE+QE+FN++LWAASG+ DF+SE+ P+T
Sbjct: 151 FHRSCLDRWMDHDQKTCPLCRKPFVPDEMQEEFNQRLWAASGVHDFHSEFCPVT 202

[Close]

BLAST of Spo14707.1 vs. NCBI nr
Match: gi|923865848|ref|XP_013708013.1| (PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Brassica napus])

HSP 1 Score: 209.5 bits (532), Expect = 4.600e-51
Identity = 100/174 (57.47%), Postives = 124/174 (71.26%), Query Frame = 1


		  
Query: 1   MGFPAGYTEVLLPKLLLTTLSLLGFVRKLVLSLLRLLGLSSFVEPGNE----LDQPEPGP 60
           MGFP GYTEV LPKL + TLS+L F+R +V SL R LGLS F+E           P   P
Sbjct: 1   MGFPVGYTEVFLPKLFVQTLSILSFIRTVVFSLFRFLGLSDFLEMDQTWPDYTSNPTRTP 60

Query: 61  IHGISSAGALIREMLPAVTYAEILALAGPEESDLPEGCAVCLYEFEEEDEIRRMRNCRHM 120
                 +  LIRE+LP + + ++   +G    DLPE CAVCLYEFE E EIR +RNCRH+
Sbjct: 61  ELRSPFSALLIREILPVIKFEDVTTTSG---EDLPESCAVCLYEFEGEQEIRWLRNCRHI 120

Query: 121 FHRCCVDRWIDHDRKTCPLCRKPFVPDELQEDFNEKLWAASGIPDFYSEYSPIT 171
           FHR C+DRW+DHD+KTCPLCR PFVPDE+QE+FN++LWAASG+ DF+SEY P+T
Sbjct: 121 FHRSCLDRWMDHDQKTCPLCRTPFVPDEMQEEFNQRLWAASGVHDFHSEYCPVT 171

[Close]

BLAST of Spo14707.1 vs. NCBI nr
Match: gi|595849344|ref|XP_007209705.1| (hypothetical protein PRUPE_ppa012459mg [Prunus persica])

HSP 1 Score: 209.1 bits (531), Expect = 6.000e-51
Identity = 100/172 (58.14%), Postives = 125/172 (72.67%), Query Frame = 1


		  
Query: 1   MGFPAGYTEVLLPKLLLTTLSLLGFVRKLVLSLLRLLGLSSFVEPGNELDQPEPGPIHGI 60
           MGFP GYTE+LLPKL + TLSLLG +RKL+ +   LLGL  F++P N    P P P    
Sbjct: 1   MGFPVGYTELLLPKLFIHTLSLLGLIRKLISTFFSLLGLQDFIQPDNAWADP-PAPFPEF 60

Query: 61  SSAGA-LIREMLPAVTYAEILALAGPEESDLPEGCAVCLYEFEEEDEIRRMRNCRHMFHR 120
            SA A LIRE+LP V +++++        D PE CAVCLYEFE EDEIRR+ NCRH+FH+
Sbjct: 61  HSASAVLIREILPVVKFSDLV--------DPPESCAVCLYEFESEDEIRRLTNCRHIFHK 120

Query: 121 CCVDRWIDHDRKTCPLCRKPFVPDELQEDFNEKLWAASGIPDFYSEYSPITN 172
            CVDRW+ +D+KTCPLCR PF+ D++Q DFNE+LWAASGIPDFY  + P T+
Sbjct: 121 GCVDRWVGYDQKTCPLCRTPFISDDMQGDFNERLWAASGIPDFYDHFYPYTD 163

[Close]

BLAST of Spo14707.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R1I7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_117460 PE=4 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 8.900e-94
Identity = 172/176 (97.73%), Postives = 173/176 (98.30%), Query Frame = 1


		  
Query: 1   MGFPAGYTEVLLPKLLLTTLSLLGFVRKLVLSLLRLLGLSSFVEPGNELDQPEPGPIHGI 60
           MGFPAGYTEVLLPKLLLTTLSLLGFVRKLVLSLLRLLGLSSFVEPGNELDQPEPGPIHGI
Sbjct: 1   MGFPAGYTEVLLPKLLLTTLSLLGFVRKLVLSLLRLLGLSSFVEPGNELDQPEPGPIHGI 60

Query: 61  SSAGALIREMLPAVTYAEILALAG---PEESDLPEGCAVCLYEFEEEDEIRRMRNCRHMF 120
           SSAGALIREMLPAVTYAEILALAG   PEESDLPEGCAVCLYEFEEEDEIRRMRNCRHMF
Sbjct: 61  SSAGALIREMLPAVTYAEILALAGPFGPEESDLPEGCAVCLYEFEEEDEIRRMRNCRHMF 120

Query: 121 HRCCVDRWIDHDRKTCPLCRKPFVPDELQEDFNEKLWAASGIPDFYSEYSPITNFL 174
           HRCCVDRWIDHDRKTCPLCRKPFVP+ELQEDFNEKLWAASGIPDFYSEYSPITNFL
Sbjct: 121 HRCCVDRWIDHDRKTCPLCRKPFVPEELQEDFNEKLWAASGIPDFYSEYSPITNFL 176

[Close]

BLAST of Spo14707.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CEW7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g100240 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 3.500e-74
Identity = 141/175 (80.57%), Postives = 151/175 (86.29%), Query Frame = 1


		  
Query: 1   MGFPAGYTEVLLPKLLLTTLSLLGFVRKLVLSLLRLLGLSSFVEPGNEL--DQPEPGPIH 60
           MGFPAGYTEVLLPKL LT LSLLGF+RK VLSLLRLLGL+S +EP + L  D PEPGP  
Sbjct: 1   MGFPAGYTEVLLPKLFLTALSLLGFLRKSVLSLLRLLGLASLIEPASPLEHDHPEPGPAL 60

Query: 61  GISSAGALIREMLPAVTYAEILALAGPEESDLPEGCAVCLYEFEEEDEIRRMRNCRHMFH 120
             SSA ALIREMLPAVTYAE +A AGP+E    E CAVCL+E+E +DE+RRMRNCRHMFH
Sbjct: 61  SESSAAALIREMLPAVTYAEAIA-AGPDEPGPAESCAVCLHEYESDDEVRRMRNCRHMFH 120

Query: 121 RCCVDRWIDHDRKTCPLCRKPFVPDELQEDFNEKLWAASGIPDFYSEYSPITNFL 174
           RCCVDRWIDHDRKTCPLCRKP VP ELQEDFNEKLWAASGIPDFYSEYSPITNFL
Sbjct: 121 RCCVDRWIDHDRKTCPLCRKPLVPHELQEDFNEKLWAASGIPDFYSEYSPITNFL 174

[Close]

BLAST of Spo14707.1 vs. UniProtKB/TrEMBL
Match: A0A078I2X2_BRANA (BnaC04g21760D protein OS=Brassica napus GN=BnaC04g21760D PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 1.100e-51
Identity = 103/174 (59.20%), Postives = 127/174 (72.99%), Query Frame = 1


		  
Query: 1   MGFPAGYTEVLLPKLLLTTLSLLGFVRKLVLSLLRLLGLSSFVEPGNELDQ--PEPGPIH 60
           MGFP GYTEV LPKL + TLS+L F+R +V SL R LGLS F+E           P  I 
Sbjct: 31  MGFPVGYTEVFLPKLFVQTLSILSFIRTVVFSLFRFLGLSDFLETDQTWPDYTSYPARIP 90

Query: 61  GISS--AGALIREMLPAVTYAEILALAGPEESDLPEGCAVCLYEFEEEDEIRRMRNCRHM 120
            + S  +  LIRE+LP + + E  A+      DLPE CAVCLYEFE E EIRR+RNCRH+
Sbjct: 91  ELPSPFSALLIREILPVIKFEE--AVTSSYGEDLPESCAVCLYEFEGEQEIRRLRNCRHI 150

Query: 121 FHRCCVDRWIDHDRKTCPLCRKPFVPDELQEDFNEKLWAASGIPDFYSEYSPIT 171
           FHR C+DRW+DHD+KTCPLCRKPFVPDE+QE+FN++LWAASG+ DF+SE+ P+T
Sbjct: 151 FHRSCLDRWMDHDQKTCPLCRKPFVPDEMQEEFNQRLWAASGVHDFHSEFCPVT 202

[Close]

BLAST of Spo14707.1 vs. UniProtKB/TrEMBL
Match: A0A078C4H5_BRANA (BnaC08g31390D protein OS=Brassica napus GN=BnaC08g31390D PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 3.200e-51
Identity = 100/174 (57.47%), Postives = 124/174 (71.26%), Query Frame = 1


		  
Query: 1   MGFPAGYTEVLLPKLLLTTLSLLGFVRKLVLSLLRLLGLSSFVEPGNE----LDQPEPGP 60
           MGFP GYTEV LPKL + TLS+L F+R +V SL R LGLS F+E           P   P
Sbjct: 1   MGFPVGYTEVFLPKLFVQTLSILSFIRTVVFSLFRFLGLSDFLEMDQTWPDYTSNPTRTP 60

Query: 61  IHGISSAGALIREMLPAVTYAEILALAGPEESDLPEGCAVCLYEFEEEDEIRRMRNCRHM 120
                 +  LIRE+LP + + ++   +G    DLPE CAVCLYEFE E EIR +RNCRH+
Sbjct: 61  ELRSPFSALLIREILPVIKFEDVTTTSG---EDLPESCAVCLYEFEGEQEIRWLRNCRHI 120

Query: 121 FHRCCVDRWIDHDRKTCPLCRKPFVPDELQEDFNEKLWAASGIPDFYSEYSPIT 171
           FHR C+DRW+DHD+KTCPLCR PFVPDE+QE+FN++LWAASG+ DF+SEY P+T
Sbjct: 121 FHRSCLDRWMDHDQKTCPLCRTPFVPDEMQEEFNQRLWAASGVHDFHSEYCPVT 171

[Close]

BLAST of Spo14707.1 vs. UniProtKB/TrEMBL
Match: M5WAZ7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012459mg PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 4.200e-51
Identity = 100/172 (58.14%), Postives = 125/172 (72.67%), Query Frame = 1


		  
Query: 1   MGFPAGYTEVLLPKLLLTTLSLLGFVRKLVLSLLRLLGLSSFVEPGNELDQPEPGPIHGI 60
           MGFP GYTE+LLPKL + TLSLLG +RKL+ +   LLGL  F++P N    P P P    
Sbjct: 1   MGFPVGYTELLLPKLFIHTLSLLGLIRKLISTFFSLLGLQDFIQPDNAWADP-PAPFPEF 60

Query: 61  SSAGA-LIREMLPAVTYAEILALAGPEESDLPEGCAVCLYEFEEEDEIRRMRNCRHMFHR 120
            SA A LIRE+LP V +++++        D PE CAVCLYEFE EDEIRR+ NCRH+FH+
Sbjct: 61  HSASAVLIREILPVVKFSDLV--------DPPESCAVCLYEFESEDEIRRLTNCRHIFHK 120

Query: 121 CCVDRWIDHDRKTCPLCRKPFVPDELQEDFNEKLWAASGIPDFYSEYSPITN 172
            CVDRW+ +D+KTCPLCR PF+ D++Q DFNE+LWAASGIPDFY  + P T+
Sbjct: 121 GCVDRWVGYDQKTCPLCRTPFISDDMQGDFNERLWAASGIPDFYDHFYPYTD 163

[Close]

BLAST of Spo14707.1 vs. ExPASy Swiss-Prot
Match: RHA1B_ARATH (E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana GN=RHA1B PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.200e-21
Identity = 59/172 (34.30%), Postives = 100/172 (58.14%), Query Frame = 1


		  
Query: 1   MGFPAGYTEVLLPKLLLTTLSLLGFVRKLVLSLLRLLGLSSFVEPGNELDQPEPGPIHGI 60
           MG P  + E+ +P  +L TL ++GF R +V +L   +GL SF++  NE  + +P  +  +
Sbjct: 1   MGLPTDFKELQIPGYVLKTLYVIGFFRDMVDALCPYIGLPSFLDH-NETSRSDPTRL-AL 60

Query: 61  SSAGALIREMLPAVTYAEILALAGPEESDLPEGCAVCLYEFEEEDEIRRMRNCRHMFHRC 120
           S++  L  E++P V ++++L       +D  + C VCL +F  +D+IR++  C H+FH  
Sbjct: 61  STSATLANELIPVVRFSDLL-------TDPEDCCTVCLSDFVSDDKIRQLPKCGHVFHHR 120

Query: 121 CVDRWI-DHDRKTCPLCRKPFVPDELQEDFNEKLWAASGIPDFYSEYSPITN 172
           C+DRWI D ++ TCP+CR  F+P+E    F+   W   G  D++ +    TN
Sbjct: 121 CLDRWIVDCNKITCPICRNRFLPEEKSTPFD---W---GTSDWFRDEVESTN 157

[Close]

BLAST of Spo14707.1 vs. ExPASy Swiss-Prot
Match: RHA1A_ARATH (Probable E3 ubiquitin-protein ligase RHA1A OS=Arabidopsis thaliana GN=RHA1A PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.200e-20
Identity = 56/173 (32.37%), Postives = 100/173 (57.80%), Query Frame = 1


		  
Query: 1   MGFPAGY-TEVLLPKLLLTTLSLLGFVRKLVLSLLRLLGLSSFVEPGNELDQPEPGPIHG 60
           MG P  + TE+ +P  +L  L ++GF R +V +L   +GL  F++  NE   P+    H 
Sbjct: 1   MGLPEDFITELQIPSYILKILYVIGFFRDIVDALCPYIGLPRFLDH-NETSAPDLTR-HA 60

Query: 61  ISSAGALIREMLPAVTYAEILALAGPEESDLPEGCAVCLYEFEEEDEIRRMRNCRHMFHR 120
           +S++ +L  E++P V ++++        +D  + C VCL +FE +D++R++  C H+FH 
Sbjct: 61  LSTSASLANELIPVVRFSDL-------PTDPEDCCTVCLSDFESDDKVRQLPKCGHVFHH 120

Query: 121 CCVDRWI-DHDRKTCPLCRKPFVPDELQEDFNEKLWAASGIPDFYSEYSPITN 172
            C+DRWI D+++  CP+CR  F+P   +E + +  W +    D++S+    TN
Sbjct: 121 YCLDRWIVDYNKMKCPVCRHRFLP---KEKYTQSDWGSGS--DWFSDEVESTN 159

[Close]

BLAST of Spo14707.1 vs. ExPASy Swiss-Prot
Match: ATL64_ARATH (RING-H2 finger protein ATL64 OS=Arabidopsis thaliana GN=ATL64 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.700e-10
Identity = 32/58 (55.17%), Postives = 35/58 (60.34%), Query Frame = 1


		  
Query: 85  PEESDLPEGCAVCLYEFEEEDEIRRMRNCRHMFHRCCVDRWIDHDRKTCPLCRKPFVP 143
           PEE    E C+VCL EFEEEDE R +  C H FH  C+D W    R TCPLCR P  P
Sbjct: 102 PEEK---EECSVCLSEFEEEDEGRLLPKCGHSFHVDCIDTWF-RSRSTCPLCRAPVQP 155

[Close]

BLAST of Spo14707.1 vs. ExPASy Swiss-Prot
Match: YOF7_SCHPO (Uncharacterized RING finger protein P4H10.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBP4H10.07 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.100e-9
Identity = 25/50 (50.00%), Postives = 32/50 (64.00%), Query Frame = 1


		  
Query: 88  SDLPEGCAVCLYEFEEEDEIRRMRNCRHMFHRCCVDRWIDHDRKTCPLCR 138
           S   E C VCL  FE  DE RR++ C H FHR C+D+W+   + +CPLCR
Sbjct: 519 SGTDERCLVCLSNFELNDECRRLKQCNHFFHRECIDQWLTSSQNSCPLCR 568

[Close]

BLAST of Spo14707.1 vs. ExPASy Swiss-Prot
Match: ATL7_ARATH (RING-H2 finger protein ATL7 OS=Arabidopsis thaliana GN=ATL7 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.900e-9
Identity = 35/102 (34.31%), Postives = 51/102 (50.00%), Query Frame = 1


		  
Query: 41  SFVEPGNELDQPEPGPIHGISSAGALIREMLPAVTYAEILALAGPEESDLPEGCAVCLYE 100
           +FV   N L   E G           IREMLP V Y E   +   +       C+VCL +
Sbjct: 72  TFVPTNNNLSTAELG-------LSKDIREMLPVVIYKESFIVKDSQ-------CSVCLGD 131

Query: 101 FEEEDEIRRMRNCRHMFHRCCVDRWIDHDRKTCPLCRKPFVP 143
           ++ E+++++M +C H FH  C+D W+     TCPLCR   +P
Sbjct: 132 YQAEEKLQQMPSCGHTFHMECIDLWLT-SHTTCPLCRLSLIP 158

[Close]

BLAST of Spo14707.1 vs. TAIR (Arabidopsis)
Match: AT3G61460.1 (brassinosteroid-responsive RING-H2)

HSP 1 Score: 197.6 bits (501), Expect = 6.300e-51
Identity = 100/181 (55.25%), Postives = 124/181 (68.51%), Query Frame = 1


		  
Query: 1   MGFPAGYTEVLLPKLLLTTLSLLGFVRKLVLSLLRLLGLSSFVEPGNELDQPEPG----- 60
           MGFP GYTEV LPKL + TLS+LGF+R +V S+ R LGLS F+E    +DQ  P      
Sbjct: 1   MGFPVGYTEVFLPKLFVQTLSILGFIRTIVFSIFRFLGLSDFLE----MDQTWPDYTSYP 60

Query: 61  ---PIHGISSAGALIREMLPAVTYAEILALAGPEESDLPEGCAVCLYEFEEEDEIRRMRN 120
              P      +  LIRE+LP + + E+         DLPE CAVCLYEFE E EIR +RN
Sbjct: 61  TRIPETRSPFSALLIREILPVIKFEELTNSG----EDLPENCAVCLYEFEGEQEIRWLRN 120

Query: 121 CRHMFHRCCVDRWIDHDRKTCPLCRKPFVPDELQEDFNEKLWAASGIPDFYSEYSPITNF 174
           CRH+FHR C+DRW+DHD+KTCPLCR PFVPDE+QE+FN++LWAASG+ DF   + P+T  
Sbjct: 121 CRHIFHRSCLDRWMDHDQKTCPLCRTPFVPDEMQEEFNQRLWAASGVHDF---HCPVTEL 170

[Close]

BLAST of Spo14707.1 vs. TAIR (Arabidopsis)
Match: AT1G63840.1 (RING/U-box superfamily protein)

HSP 1 Score: 151.8 bits (382), Expect = 4.000e-37
Identity = 78/160 (48.75%), Postives = 108/160 (67.50%), Query Frame = 1


		  
Query: 1   MGFPAGYTEVLLPKLLLTTLSLLGFVRKLVLSLLRLLGLSSFVEPGN-ELDQPEPGP-IH 60
           MGFP GY+E+LLPK+    LS LG +RKL+ ++ +++GL  F+EP       P+P P + 
Sbjct: 1   MGFPVGYSELLLPKIFFYLLSFLGLIRKLISTMFKIIGLPDFLEPEPVSTSWPDPPPTLT 60

Query: 61  GISSAGALIREMLPAVTYAEILALAGPEESDLPEGCAVCLYEFEEEDEIRRMRNCRHMFH 120
              SA  L  EMLP V +++I     PE     E CAVCLY+FE +DEIRR+ NCRH+FH
Sbjct: 61  KPDSAAILAGEMLPVVRFSDINR---PES----ECCAVCLYDFENDDEIRRLTNCRHIFH 120

Query: 121 RCCVDRW-IDHDRKTCPLCRKPFVPDELQEDFNEKLWAAS 158
           R C+DRW + +++ TCPLCR  F+PD LQ +FN++LW+ S
Sbjct: 121 RGCLDRWMMGYNQMTCPLCRTQFIPDHLQLEFNQRLWSQS 153

[Close]

BLAST of Spo14707.1 vs. TAIR (Arabidopsis)
Match: AT5G41400.1 (RING/U-box superfamily protein)

HSP 1 Score: 136.7 bits (343), Expect = 1.300e-32
Identity = 76/172 (44.19%), Postives = 107/172 (62.21%), Query Frame = 1


		  
Query: 1   MGFPAGYTEVLLPKLLLTTLSLLGFVRKLVLSLLRLLGLSSFVEP------GNELDQPEP 60
           MG+P GYTE+LLP++ L  LSLLG +R L+ +  R+LGL  F+E        + L+ P  
Sbjct: 1   MGYPVGYTELLLPRIFLHLLSLLGLIRTLIDTGFRILGLPDFLESDPVSSSSSWLEPPYM 60

Query: 61  GPI---HGISS-----AGALIREMLPAVTYAEILALAGPEESDLPEGCAVCLYEFEEEDE 120
                 H  SS     A  L  E+LP + ++E+        SD    CAVCL+EFE +DE
Sbjct: 61  STAAHHHQESSFFFPVAARLAGEILPVIRFSELTRPGFGSGSDC---CAVCLHEFENDDE 120

Query: 121 IRRMRNCRHMFHRCCVDRW-IDHDRKTCPLCRKPFVPDELQEDFNEKLWAAS 158
           IRR+ NC+H+FHR C+DRW + +++ TCPLCR PF+ DELQ  FN+++W+ S
Sbjct: 121 IRRLTNCQHIFHRSCLDRWMMGYNQMTCPLCRTPFISDELQVAFNQRVWSES 169

[Close]

BLAST of Spo14707.1 vs. TAIR (Arabidopsis)
Match: AT4G11360.1 (RING-H2 finger A1B)

HSP 1 Score: 103.6 bits (257), Expect = 1.200e-22
Identity = 59/172 (34.30%), Postives = 100/172 (58.14%), Query Frame = 1


		  
Query: 1   MGFPAGYTEVLLPKLLLTTLSLLGFVRKLVLSLLRLLGLSSFVEPGNELDQPEPGPIHGI 60
           MG P  + E+ +P  +L TL ++GF R +V +L   +GL SF++  NE  + +P  +  +
Sbjct: 1   MGLPTDFKELQIPGYVLKTLYVIGFFRDMVDALCPYIGLPSFLDH-NETSRSDPTRL-AL 60

Query: 61  SSAGALIREMLPAVTYAEILALAGPEESDLPEGCAVCLYEFEEEDEIRRMRNCRHMFHRC 120
           S++  L  E++P V ++++L       +D  + C VCL +F  +D+IR++  C H+FH  
Sbjct: 61  STSATLANELIPVVRFSDLL-------TDPEDCCTVCLSDFVSDDKIRQLPKCGHVFHHR 120

Query: 121 CVDRWI-DHDRKTCPLCRKPFVPDELQEDFNEKLWAASGIPDFYSEYSPITN 172
           C+DRWI D ++ TCP+CR  F+P+E    F+   W   G  D++ +    TN
Sbjct: 121 CLDRWIVDCNKITCPICRNRFLPEEKSTPFD---W---GTSDWFRDEVESTN 157

[Close]

BLAST of Spo14707.1 vs. TAIR (Arabidopsis)
Match: AT4G11370.1 (RING-H2 finger A1A)

HSP 1 Score: 99.4 bits (246), Expect = 2.400e-21
Identity = 56/173 (32.37%), Postives = 100/173 (57.80%), Query Frame = 1


		  
Query: 1   MGFPAGY-TEVLLPKLLLTTLSLLGFVRKLVLSLLRLLGLSSFVEPGNELDQPEPGPIHG 60
           MG P  + TE+ +P  +L  L ++GF R +V +L   +GL  F++  NE   P+    H 
Sbjct: 1   MGLPEDFITELQIPSYILKILYVIGFFRDIVDALCPYIGLPRFLDH-NETSAPDLTR-HA 60

Query: 61  ISSAGALIREMLPAVTYAEILALAGPEESDLPEGCAVCLYEFEEEDEIRRMRNCRHMFHR 120
           +S++ +L  E++P V ++++        +D  + C VCL +FE +D++R++  C H+FH 
Sbjct: 61  LSTSASLANELIPVVRFSDL-------PTDPEDCCTVCLSDFESDDKVRQLPKCGHVFHH 120

Query: 121 CCVDRWI-DHDRKTCPLCRKPFVPDELQEDFNEKLWAASGIPDFYSEYSPITN 172
            C+DRWI D+++  CP+CR  F+P   +E + +  W +    D++S+    TN
Sbjct: 121 YCLDRWIVDYNKMKCPVCRHRFLP---KEKYTQSDWGSGS--DWFSDEVESTN 159

The following BLAST results are available for this feature:

BLAST of Spo14707.1 vs. NCBI nr
BLAST of Spo14707.1 vs. UniProtKB/TrEMBL
BLAST of Spo14707.1 vs. ExPASy Swiss-Prot
BLAST of Spo14707.1 vs. TAIR (Arabidopsis)

BLAST of Spo14707.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902197333\|gb\|KNA13391.1\|	1.3e-93	97.7	hypothetical protein SOVF_1174...	[more]
gi\|870860759\|gb\|KMT12067.1\|	5.0e-74	80.5	hypothetical protein BVRB_5g10...	[more]
gi\|674888727\|emb\|CDY43934.1\|	1.6e-51	59.2	BnaC04g21760D [Brassica napus]	[more]
gi\|923865848\|ref\|XP_013708013.1\|	4.6e-51	57.4	PREDICTED: E3 ubiquitin-protei...	[more]
gi\|595849344\|ref\|XP_007209705.1\|	6.0e-51	58.1	hypothetical protein PRUPE_ppa...	[more]

BLAST of Spo14707.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9R1I7_SPIOL	8.9e-94	97.7	Uncharacterized protein OS=Spi...	[more]
A0A0J8CEW7_BETVU	3.5e-74	80.5	Uncharacterized protein OS=Bet...	[more]
A0A078I2X2_BRANA	1.1e-51	59.2	BnaC04g21760D protein OS=Brass...	[more]
A0A078C4H5_BRANA	3.2e-51	57.4	BnaC08g31390D protein OS=Brass...	[more]
M5WAZ7_PRUPE	4.2e-51	58.1	Uncharacterized protein OS=Pru...	[more]

BLAST of Spo14707.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
RHA1B_ARATH	2.2e-21	34.3	E3 ubiquitin-protein ligase RH...	[more]
RHA1A_ARATH	4.2e-20	32.3	Probable E3 ubiquitin-protein ...	[more]
ATL64_ARATH	6.7e-10	55.1	RING-H2 finger protein ATL64 O...	[more]
YOF7_SCHPO	1.1e-9	50.0	Uncharacterized RING finger pr...	[more]
ATL7_ARATH	1.9e-9	34.3	RING-H2 finger protein ATL7 OS...	[more]

BLAST of Spo14707.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT3G61460.1	6.3e-51	55.2	brassinosteroid-responsive RIN...	[more]
AT1G63840.1	4.0e-37	48.7	RING/U-box superfamily protein	[more]
AT5G41400.1	1.3e-32	44.1	RING/U-box superfamily protein	[more]
AT4G11360.1	1.2e-22	34.3	RING-H2 finger A1B	[more]
AT4G11370.1	2.4e-21	32.3	RING-H2 finger A1A	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 94..137 score: 9.0
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 94..136 score: 2.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 94..137 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 92..140 score: 3.2
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 65..162 score: 6.2
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 88..143 score: 1.86

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0097159	organic cyclic compound binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo00414	0.66	Barchart \| Table