Spo14805 (gene) | SpinachBase

Overview


Name	Spo14805
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	BnaUnng02380D protein
Location	chr5 : 52726131 .. 52726433 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCTCCAGCTCGCAACCACGGGGGCTTGCCCTTCGAGGCCAGAGTGGGCTCAGCAGTCAGCCTCCATTCGAAGTTAGGGGGTCTTTCGCTTTTGCCAGATCTAGAGAGATACTACGAGTCCTCCGTCCCAGATTCTATCGCCGCGGCCATCTGGTTCACCGGTACTACCAAAAAGTCTCATGCTTACGTTACTCTTATTGATGGTTTTCTTATCTTGGACCACGAAGACTCCGGTCGTGCTTCTGGTTTCTATTCTCATCATCATATTGATGAAAAATCTCCTCGTGCTCTGCCATAA

mRNA sequence

ATGGCAGCTCCAGCTCGCAACCACGGGGGCTTGCCCTTCGAGGCCAGAGTGGGCTCAGCAGTCAGCCTCCATTCGAAGTTAGGGGGTCTTTCGCTTTTGCCAGATCTAGAGAGATACTACGAGTCCTCCGTCCCAGATTCTATCGCCGCGGCCATCTGGTTCACCGGTACTACCAAAAAGTCTCATGCTTACGTTACTCTTATTGATGGTTTTCTTATCTTGGACCACGAAGACTCCGGTCGTGCTTCTGGTTTCTATTCTCATCATCATATTGATGAAAAATCTCCTCGTGCTCTGCCATAA

Coding sequence (CDS)

ATGGCAGCTCCAGCTCGCAACCACGGGGGCTTGCCCTTCGAGGCCAGAGTGGGCTCAGCAGTCAGCCTCCATTCGAAGTTAGGGGGTCTTTCGCTTTTGCCAGATCTAGAGAGATACTACGAGTCCTCCGTCCCAGATTCTATCGCCGCGGCCATCTGGTTCACCGGTACTACCAAAAAGTCTCATGCTTACGTTACTCTTATTGATGGTTTTCTTATCTTGGACCACGAAGACTCCGGTCGTGCTTCTGGTTTCTATTCTCATCATCATATTGATGAAAAATCTCCTCGTGCTCTGCCATAA

Protein sequence

MAAPARNHGGLPFEARVGSAVSLHSKLGGLSLLPDLERYYESSVPDSIAAAIWFTGTTKKSHAYVTLIDGFLILDHEDSGRASGFYSHHHIDEKSPRALP

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo14805.1	Spo14805.1	mRNA

Homology

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BLAST of Spo14805.1 vs. NCBI nr
Match: gi|902224785|gb|KNA19876.1| (hypothetical protein SOVF_057420 [Spinacia oleracea])

HSP 1 Score: 207.2 bits (526), Expect = 1.300e-50
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1

		  
Query: 1   MAAPARNHGGLPFEARVGSAVSLHSKLGGLSLLPDLERYYESSVPDSIAAAIWFTGTTKK 60
           MAAPARNHGGLPFEARVGSAVSLHSKLGGLSLLPDLERYYESSVPDSIAAAIWFTGTTKK
Sbjct: 1   MAAPARNHGGLPFEARVGSAVSLHSKLGGLSLLPDLERYYESSVPDSIAAAIWFTGTTKK 60

Query: 61  SHAYVTLIDGFLILDHEDSGRASGFYSHHHIDEKSPRALP 101
           SHAYVTLIDGFLILDHEDSGRASGFYSHHHIDEKSPRALP
Sbjct: 61  SHAYVTLIDGFLILDHEDSGRASGFYSHHHIDEKSPRALP 100

[Close]

BLAST of Spo14805.1 vs. NCBI nr
Match: gi|566256711|ref|XP_006388280.1| (hypothetical protein POPTR_0248s00200g [Populus trichocarpa])

HSP 1 Score: 148.3 bits (373), Expect = 7.200e-33
Identity = 75/103 (72.82%), Postives = 81/103 (78.64%), Query Frame = 1

		  
Query: 1   MAAPARNHGGLPFEAR---VGSAVSLHSKLGGLSLLPDLERYYESSVPDSIAAAIWFTGT 60
           MAAPARNHG     AR      +  +   LGGLSLLPDLERYYESSV DSIAAA+WFT T
Sbjct: 1   MAAPARNHGTGTRHARPEWAQRSAPIRITLGGLSLLPDLERYYESSVSDSIAAAVWFTST 60

Query: 61  TKKSHAYVTLIDGFLILDHEDSGRASGFYSHHHIDEKSPRALP 101
           TKKSHAYVT+IDG +ILDHED GRASGF+SHHHID KSPRA P
Sbjct: 61  TKKSHAYVTVIDGLIILDHEDPGRASGFHSHHHIDGKSPRAPP 103

[Close]

BLAST of Spo14805.1 vs. NCBI nr
Match: gi|223524768|gb|EEF27698.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 137.5 bits (345), Expect = 1.300e-29
Identity = 66/74 (89.19%), Postives = 70/74 (94.59%), Query Frame = 1

		  
Query: 27  LGGLSLLPDLERYYESSVPDSIAAAIWFTGTTKKSHAYVTLIDGFLILDHEDSGRASGFY 86
           LGGLSLLPDLERYYESSVPDSIAAAIWFTGTTKKSHAYVT+ DG +ILDHED GRASGF+
Sbjct: 189 LGGLSLLPDLERYYESSVPDSIAAAIWFTGTTKKSHAYVTVTDGLIILDHEDPGRASGFH 248

Query: 87  SHHHIDEKSPRALP 101
           S HHID+KSPRALP
Sbjct: 249 S-HHIDDKSPRALP 261

[Close]

BLAST of Spo14805.1 vs. NCBI nr
Match: gi|763739822|gb|KJB07321.1| (hypothetical protein B456_001G166600 [Gossypium raimondii])

HSP 1 Score: 137.1 bits (344), Expect = 1.700e-29
Identity = 64/81 (79.01%), Postives = 71/81 (87.65%), Query Frame = 1

		  
Query: 16  RVGSAVSLHSKLGGLSLLPDLERYYESSVPDSIAAAIWFTGTTKKSHAYVTLIDGFLILD 75
           R   + S+   LGGLSLLPDLERYYESSVPDSIAAAIWFTGTTKKSHAYVT+IDGF+I D
Sbjct: 94  RAQRSASIRITLGGLSLLPDLERYYESSVPDSIAAAIWFTGTTKKSHAYVTVIDGFIIFD 153

Query: 76  HEDSGRASGFYSHHHIDEKSP 97
           +E  GRASGF+SHHHID+KSP
Sbjct: 154 YEGPGRASGFHSHHHIDDKSP 174

[Close]

BLAST of Spo14805.1 vs. NCBI nr
Match: gi|224135193|ref|XP_002322006.1| (hypothetical protein POPTR_0015s01800g [Populus trichocarpa])

HSP 1 Score: 134.0 bits (336), Expect = 1.400e-28
Identity = 69/94 (73.40%), Postives = 76/94 (80.85%), Query Frame = 1

		  
Query: 1  MAAPARNHGGLPFEAR---VGSAVSLHSKLGGLSLLPDLERYYESSVPDSIAAAIWFTGT 60
          MAAPARNHG  P  AR      +  +   LGGLSLLPDL+RYYESSVPDSIAAAIWFTGT
Sbjct: 1  MAAPARNHGTGPRHARPEWAQRSAPIRIILGGLSLLPDLKRYYESSVPDSIAAAIWFTGT 60

Query: 61 TKKSHAYVTLIDGFLILDHEDSGRASGFYSHHHI 92
          TKKSHAYVT+IDG +ILDHED G ASGF+SHHH+
Sbjct: 61 TKKSHAYVTVIDGLIILDHEDPG-ASGFHSHHHM 93

[Close]

BLAST of Spo14805.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RK31_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_057420 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 9.100e-51
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1

		  
Query: 1   MAAPARNHGGLPFEARVGSAVSLHSKLGGLSLLPDLERYYESSVPDSIAAAIWFTGTTKK 60
           MAAPARNHGGLPFEARVGSAVSLHSKLGGLSLLPDLERYYESSVPDSIAAAIWFTGTTKK
Sbjct: 1   MAAPARNHGGLPFEARVGSAVSLHSKLGGLSLLPDLERYYESSVPDSIAAAIWFTGTTKK 60

Query: 61  SHAYVTLIDGFLILDHEDSGRASGFYSHHHIDEKSPRALP 101
           SHAYVTLIDGFLILDHEDSGRASGFYSHHHIDEKSPRALP
Sbjct: 61  SHAYVTLIDGFLILDHEDSGRASGFYSHHHIDEKSPRALP 100

[Close]

BLAST of Spo14805.1 vs. UniProtKB/TrEMBL
Match: U7DY90_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0248s00200g PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 5.000e-33
Identity = 75/103 (72.82%), Postives = 81/103 (78.64%), Query Frame = 1

		  
Query: 1   MAAPARNHGGLPFEAR---VGSAVSLHSKLGGLSLLPDLERYYESSVPDSIAAAIWFTGT 60
           MAAPARNHG     AR      +  +   LGGLSLLPDLERYYESSV DSIAAA+WFT T
Sbjct: 1   MAAPARNHGTGTRHARPEWAQRSAPIRITLGGLSLLPDLERYYESSVSDSIAAAVWFTST 60

Query: 61  TKKSHAYVTLIDGFLILDHEDSGRASGFYSHHHIDEKSPRALP 101
           TKKSHAYVT+IDG +ILDHED GRASGF+SHHHID KSPRA P
Sbjct: 61  TKKSHAYVTVIDGLIILDHEDPGRASGFHSHHHIDGKSPRAPP 103

[Close]

BLAST of Spo14805.1 vs. UniProtKB/TrEMBL
Match: B9T8W5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_2007240 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 8.900e-30
Identity = 66/74 (89.19%), Postives = 70/74 (94.59%), Query Frame = 1

		  
Query: 27  LGGLSLLPDLERYYESSVPDSIAAAIWFTGTTKKSHAYVTLIDGFLILDHEDSGRASGFY 86
           LGGLSLLPDLERYYESSVPDSIAAAIWFTGTTKKSHAYVT+ DG +ILDHED GRASGF+
Sbjct: 189 LGGLSLLPDLERYYESSVPDSIAAAIWFTGTTKKSHAYVTVTDGLIILDHEDPGRASGFH 248

Query: 87  SHHHIDEKSPRALP 101
           S HHID+KSPRALP
Sbjct: 249 S-HHIDDKSPRALP 261

[Close]

BLAST of Spo14805.1 vs. UniProtKB/TrEMBL
Match: A0A0D2PTC4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G166600 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.200e-29
Identity = 64/81 (79.01%), Postives = 71/81 (87.65%), Query Frame = 1

		  
Query: 16  RVGSAVSLHSKLGGLSLLPDLERYYESSVPDSIAAAIWFTGTTKKSHAYVTLIDGFLILD 75
           R   + S+   LGGLSLLPDLERYYESSVPDSIAAAIWFTGTTKKSHAYVT+IDGF+I D
Sbjct: 94  RAQRSASIRITLGGLSLLPDLERYYESSVPDSIAAAIWFTGTTKKSHAYVTVIDGFIIFD 153

Query: 76  HEDSGRASGFYSHHHIDEKSP 97
           +E  GRASGF+SHHHID+KSP
Sbjct: 154 YEGPGRASGFHSHHHIDDKSP 174

[Close]

BLAST of Spo14805.1 vs. UniProtKB/TrEMBL
Match: B9IDT7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s01800g PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 9.800e-29
Identity = 69/94 (73.40%), Postives = 76/94 (80.85%), Query Frame = 1

		  
Query: 1  MAAPARNHGGLPFEAR---VGSAVSLHSKLGGLSLLPDLERYYESSVPDSIAAAIWFTGT 60
          MAAPARNHG  P  AR      +  +   LGGLSLLPDL+RYYESSVPDSIAAAIWFTGT
Sbjct: 1  MAAPARNHGTGPRHARPEWAQRSAPIRIILGGLSLLPDLKRYYESSVPDSIAAAIWFTGT 60

Query: 61 TKKSHAYVTLIDGFLILDHEDSGRASGFYSHHHI 92
          TKKSHAYVT+IDG +ILDHED G ASGF+SHHH+
Sbjct: 61 TKKSHAYVTVIDGLIILDHEDPG-ASGFHSHHHM 93

The following BLAST results are available for this feature:

BLAST of Spo14805.1 vs. NCBI nr
BLAST of Spo14805.1 vs. UniProtKB/TrEMBL
BLAST of Spo14805.1 vs. ExPASy Swiss-Prot
BLAST of Spo14805.1 vs. TAIR (Arabidopsis)

BLAST of Spo14805.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|902224785\|gb\|KNA19876.1\|	1.3e-50	100.	hypothetical protein SOVF_0574...	[more]
gi\|566256711\|ref\|XP_006388280.1\|	7.2e-33	72.8	hypothetical protein POPTR_024...	[more]
gi\|223524768\|gb\|EEF27698.1\|	1.3e-29	89.1	conserved hypothetical protein...	[more]
gi\|763739822\|gb\|KJB07321.1\|	1.7e-29	79.0	hypothetical protein B456_001G...	[more]
gi\|224135193\|ref\|XP_002322006.1\|	1.4e-28	73.4	hypothetical protein POPTR_001...	[more]

BLAST of Spo14805.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9RK31_SPIOL	9.1e-51	100.	Uncharacterized protein OS=Spi...	[more]
U7DY90_POPTR	5.0e-33	72.8	Uncharacterized protein OS=Pop...	[more]
B9T8W5_RICCO	8.9e-30	89.1	Putative uncharacterized prote...	[more]
A0A0D2PTC4_GOSRA	1.2e-29	79.0	Uncharacterized protein OS=Gos...	[more]
B9IDT7_POPTR	9.8e-29	73.4	Uncharacterized protein OS=Pop...	[more]

BLAST of Spo14805.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo14805.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0006396	RNA processing
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0015979	photosynthesis
biological_process	GO:0044238	primary metabolic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0048312	intracellular distribution of mitochondria
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0016491	oxidoreductase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo01478	0.70	Barchart \| Table
Spo08931	0.69	Barchart \| Table
Spo01134	0.68	Barchart \| Table
Spo14817	0.68	Barchart \| Table
Spo19064	0.68	Barchart \| Table
Spo12735	0.67	Barchart \| Table
Spo17523	0.66	Barchart \| Table
Spo14267	0.65	Barchart \| Table
Spo19607	0.65	Barchart \| Table
Spo09413	0.65	Barchart \| Table
Spo25537	0.65	Barchart \| Table
Spo25100	0.65	Barchart \| Table