Spo14816 (gene)

Overview
NameSpo14816
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionNADH-ubiquinone oxidoreductase chain 4 (1.6.5.3)
Locationchr5 : 52729204 .. 52730216 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAGCCCGGGTGAAAGCAAAAAGAAAAAGGTATGAAGTCGCTAAAGCGAAGATTTTGGAGAGAAGAAAAGTAGAAAGAGGGAAAGAAGTTTAGTGCTAGTTCTTGCTGATTTATTTATTTAGATTCTACATTGGATAAAGAATGAAAAAAAGAATCTAAATAAAGCTCAGGGGGGCGGGAGGCCCCACTACTTCTTCATTCAGGGGGGAGGAATCAATTTCCACTGGGCGAGAGGTACACCTAACTTACCTACCTACTCATCAATCACGGTATTCAGCTGACTTGCACTGATAGACCTTTATTGTATTAGAATTAGGCGCTCATCTTTTTACTGTTGTCAACTAATCTTTTCAATGTTCGATTTTGCTCTATGTTAGAACATTTCTGTGAATGCTATTCTGATCTAAGTGGTCTTATTCTGTGTCCCGTGCTAGGAAGCATTACTCTTCTTTTCATTCCAAATTCAAGAATACGATCGATACGATTGATTGGTCTGTGCGCTTCTCTTATTACTTTTTTGTATTCTCCTGTTCTTCGGATACAATTTGATCCTTCTACGGCCAAATCTCAATTTGTGGAAAGCCTTCGATGGCTTCCTTATGAAAACATCAATTTTTATTTGGGTATAGACGGTATCTCTTTATTCTTCGTGATATTGACCACATTTTTGATCCCTATTTGCATTTTAGTGGGTTGGTCTGGTATGAGAAGTTATGGGAAAGAGTATATTACAGCATCTCTAATTTTAGAATTTCTAATGATCGCCGTGTTCTGCATGCTGGATCTTCTACTATTCTATGTTCTTTTCGAAAGCGTGCCAATCCCTATGTTGTGCGGAGCTGAGCATCTTCTATTCGCTAGGATAAATCCTCTGCAGGGGCCTTGTGCAGTAAACCCCCTACGGGCGGTCGTCCGTCGTCGTAAAGTAGTCTCCGCGAAGCTTTCGGGAAGAGGGGTAGTCTTGTGTGTAAGCATAGCATTTCTGGTCGAACCCGCCCAACTTAACTAA

mRNA sequence

ATGAAAAGCCCGGGTGAAAGCAAAAAGAAAAAGATTCTACATTGGATAAAGAATGAAAAAAAGAATCTAAATAAAGCTCAGGGGGGCGGGAGGCCCCACTACTTCTTCATTCAGGGGGGAGGAATCAATTTCCACTGGGCGAGAGTGGGTTGGTCTGGTATGAGAAGTTATGGGAAAGAGTATATTACAGCATCTCTAATTTTAGAATTTCTAATGATCGCCGTGTTCTGCATGCTGGATCTTCTACTATTCTATGTTCTTTTCGAAAGCGTGCCAATCCCTATGTTGTGCGGAGCTGAGCATCTTCTATTCGCTAGGATAAATCCTCTGCAGGGGCCTTGTGCAGTAAACCCCCTACGGGCGGTCGTCCGTCGTCGTAAAGTAGTCTCCGCGAAGCTTTCGGGAAGAGGGGTAGTCTTGTGTGTAAGCATAGCATTTCTGGTCGAACCCGCCCAACTTAACTAA

Coding sequence (CDS)

ATGAAAAGCCCGGGTGAAAGCAAAAAGAAAAAGATTCTACATTGGATAAAGAATGAAAAAAAGAATCTAAATAAAGCTCAGGGGGGCGGGAGGCCCCACTACTTCTTCATTCAGGGGGGAGGAATCAATTTCCACTGGGCGAGAGTGGGTTGGTCTGGTATGAGAAGTTATGGGAAAGAGTATATTACAGCATCTCTAATTTTAGAATTTCTAATGATCGCCGTGTTCTGCATGCTGGATCTTCTACTATTCTATGTTCTTTTCGAAAGCGTGCCAATCCCTATGTTGTGCGGAGCTGAGCATCTTCTATTCGCTAGGATAAATCCTCTGCAGGGGCCTTGTGCAGTAAACCCCCTACGGGCGGTCGTCCGTCGTCGTAAAGTAGTCTCCGCGAAGCTTTCGGGAAGAGGGGTAGTCTTGTGTGTAAGCATAGCATTTCTGGTCGAACCCGCCCAACTTAACTAA

Protein sequence

MKSPGESKKKKILHWIKNEKKNLNKAQGGGRPHYFFIQGGGINFHWARVGWSGMRSYGKEYITASLILEFLMIAVFCMLDLLLFYVLFESVPIPMLCGAEHLLFARINPLQGPCAVNPLRAVVRRRKVVSAKLSGRGVVLCVSIAFLVEPAQLN
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo14816.1Spo14816.1mRNA


Homology
BLAST of Spo14816.1 vs. NCBI nr
Match: gi|323435103|ref|YP_004222321.1| (hypothetical protein BevumaM_p086 (mitochondrion) [Beta vulgaris subsp. maritima])

HSP 1 Score: 110.2 bits (274), Expect = 3.400e-21
Identity = 57/59 (96.61%), Postives = 57/59 (96.61%), Query Frame = 1

		  

Query: 49  VGWSGMRSYGKEYITASLILEFLMIAVFCMLDLLLFYVLFESVPIPMLCGAEHLLFARI 108
           VGWSGMRSYGKEYITASLI EFLMIAVFCMLDLLLFYVL ESVPIPMLCGAEHLLFARI
Sbjct: 107 VGWSGMRSYGKEYITASLIREFLMIAVFCMLDLLLFYVLSESVPIPMLCGAEHLLFARI 165

BLAST of Spo14816.1 vs. NCBI nr
Match: gi|586829798|gb|AHJ81038.1| (orf175 (mitochondrion) [Panax ginseng])

HSP 1 Score: 99.4 bits (246), Expect = 5.900e-18
Identity = 54/59 (91.53%), Postives = 54/59 (91.53%), Query Frame = 1

		  

Query: 49  VGWSGMRSYGKEYITASLILEFLMIAVFCMLDLLLFYVLFESVPIPMLCGAEHLLFARI 108
           VGWSGMRSYGKEYITASLI EFLMIAVF MLD LLFYVL ESVPIPMLCGAEHLLFA I
Sbjct: 107 VGWSGMRSYGKEYITASLIREFLMIAVFRMLDPLLFYVLPESVPIPMLCGAEHLLFAGI 165

BLAST of Spo14816.1 vs. NCBI nr
Match: gi|992272480|gb|KXG32594.1| (hypothetical protein SORBI_003G173200 [Sorghum bicolor])

HSP 1 Score: 97.8 bits (242), Expect = 1.700e-17
Identity = 52/59 (88.14%), Postives = 53/59 (89.83%), Query Frame = 1

		  

Query: 49  VGWSGMRSYGKEYITASLILEFLMIAVFCMLDLLLFYVLFESVPIPMLCGAEHLLFARI 108
           VGWSGMRS+GKEYITA LI EFLMIAV CMLD LLFYVL ESVPIPMLCGAEHLLFA I
Sbjct: 48  VGWSGMRSFGKEYITAFLIREFLMIAVSCMLDPLLFYVLSESVPIPMLCGAEHLLFAGI 106

BLAST of Spo14816.1 vs. NCBI nr
Match: gi|944221342|gb|KQK85789.1| (hypothetical protein SETIT_020767mg, partial [Setaria italica])

HSP 1 Score: 97.8 bits (242), Expect = 1.700e-17
Identity = 52/59 (88.14%), Postives = 53/59 (89.83%), Query Frame = 1

		  

Query: 49  VGWSGMRSYGKEYITASLILEFLMIAVFCMLDLLLFYVLFESVPIPMLCGAEHLLFARI 108
           VGWSGMRS+GKEYITA LI EFLMIAV CMLD LLFYVL ESVPIPMLCGAEHLLFA I
Sbjct: 107 VGWSGMRSFGKEYITAFLIREFLMIAVSCMLDPLLFYVLSESVPIPMLCGAEHLLFAGI 165

BLAST of Spo14816.1 vs. NCBI nr
Match: gi|242053077|ref|XP_002455684.1| (hypothetical protein SORBIDRAFT_03g020225, partial [Sorghum bicolor])

HSP 1 Score: 97.8 bits (242), Expect = 1.700e-17
Identity = 52/59 (88.14%), Postives = 53/59 (89.83%), Query Frame = 1

		  

Query: 49  VGWSGMRSYGKEYITASLILEFLMIAVFCMLDLLLFYVLFESVPIPMLCGAEHLLFARI 108
           VGWSGMRS+GKEYITA LI EFLMIAV CMLD LLFYVL ESVPIPMLCGAEHLLFA I
Sbjct: 84  VGWSGMRSFGKEYITAFLIREFLMIAVSCMLDPLLFYVLSESVPIPMLCGAEHLLFAGI 142

BLAST of Spo14816.1 vs. UniProtKB/TrEMBL
Match: E6ZDW4_BETVM (Putative uncharacterized protein orf175 OS=Beta vulgaris subsp. maritima GN=orf175 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.300e-21
Identity = 57/59 (96.61%), Postives = 57/59 (96.61%), Query Frame = 1

		  

Query: 49  VGWSGMRSYGKEYITASLILEFLMIAVFCMLDLLLFYVLFESVPIPMLCGAEHLLFARI 108
           VGWSGMRSYGKEYITASLI EFLMIAVFCMLDLLLFYVL ESVPIPMLCGAEHLLFARI
Sbjct: 107 VGWSGMRSYGKEYITASLIREFLMIAVFCMLDLLLFYVLSESVPIPMLCGAEHLLFARI 165

BLAST of Spo14816.1 vs. UniProtKB/TrEMBL
Match: G2XLU3_BETMA (Uncharacterized protein OS=Beta macrocarpa GN=orf175 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.300e-21
Identity = 57/59 (96.61%), Postives = 57/59 (96.61%), Query Frame = 1

		  

Query: 49  VGWSGMRSYGKEYITASLILEFLMIAVFCMLDLLLFYVLFESVPIPMLCGAEHLLFARI 108
           VGWSGMRSYGKEYITASLI EFLMIAVFCMLDLLLFYVL ESVPIPMLCGAEHLLFARI
Sbjct: 107 VGWSGMRSYGKEYITASLIREFLMIAVFCMLDLLLFYVLSESVPIPMLCGAEHLLFARI 165

BLAST of Spo14816.1 vs. UniProtKB/TrEMBL
Match: A0A096XFA7_PANGI (Orf175 OS=Panax ginseng GN=orf175 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.100e-18
Identity = 54/59 (91.53%), Postives = 54/59 (91.53%), Query Frame = 1

		  

Query: 49  VGWSGMRSYGKEYITASLILEFLMIAVFCMLDLLLFYVLFESVPIPMLCGAEHLLFARI 108
           VGWSGMRSYGKEYITASLI EFLMIAVF MLD LLFYVL ESVPIPMLCGAEHLLFA I
Sbjct: 107 VGWSGMRSYGKEYITASLIREFLMIAVFRMLDPLLFYVLPESVPIPMLCGAEHLLFAGI 165

BLAST of Spo14816.1 vs. UniProtKB/TrEMBL
Match: W5AVM2_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.200e-17
Identity = 52/59 (88.14%), Postives = 53/59 (89.83%), Query Frame = 1

		  

Query: 49  VGWSGMRSYGKEYITASLILEFLMIAVFCMLDLLLFYVLFESVPIPMLCGAEHLLFARI 108
           VGWSGMRS+GKEYITA LI EFLMIAV CMLD LLFYVL ESVPIPMLCGAEHLLFA I
Sbjct: 24  VGWSGMRSFGKEYITAFLIREFLMIAVSCMLDPLLFYVLSESVPIPMLCGAEHLLFAGI 82

BLAST of Spo14816.1 vs. UniProtKB/TrEMBL
Match: W5DTC0_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.200e-17
Identity = 52/59 (88.14%), Postives = 53/59 (89.83%), Query Frame = 1

		  

Query: 49  VGWSGMRSYGKEYITASLILEFLMIAVFCMLDLLLFYVLFESVPIPMLCGAEHLLFARI 108
           VGWSGMRS+GKEYITA LI EFLMIAV CMLD LLFYVL ESVPIPMLCGAEHLLFA I
Sbjct: 107 VGWSGMRSFGKEYITAFLIREFLMIAVSCMLDPLLFYVLSESVPIPMLCGAEHLLFAGI 165

BLAST of Spo14816.1 vs. ExPASy Swiss-Prot
Match: NU4M_WHEAT (NADH-ubiquinone oxidoreductase chain 4 OS=Triticum aestivum GN=ND4 PE=2 SV=2)

HSP 1 Score: 78.2 bits (191), Expect = 8.900e-14
Identity = 41/47 (87.23%), Postives = 42/47 (89.36%), Query Frame = 1

		  

Query: 49  VGWSGMRSYGKEYITASLILEFLMIAVFCMLDLLLFYVLFESVPIPM 96
           VGWSGMRS+GKEYI A LI EFLMIAVFCMLDLLLFYV FESV IPM
Sbjct: 107 VGWSGMRSFGKEYIIAFLICEFLMIAVFCMLDLLLFYVFFESVLIPM 153

BLAST of Spo14816.1 vs. ExPASy Swiss-Prot
Match: NU4M_BRACM (NADH-ubiquinone oxidoreductase chain 4 OS=Brassica campestris GN=ND4 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.000e-13
Identity = 42/47 (89.36%), Postives = 42/47 (89.36%), Query Frame = 1

		  

Query: 49  VGWSGMRSYGKEYITASLILEFLMIAVFCMLDLLLFYVLFESVPIPM 96
           VGWSGMRSYGKEYITA LI EFLMIAVF MLDLLLFYV  ESVPIPM
Sbjct: 107 VGWSGMRSYGKEYITAFLIREFLMIAVFRMLDLLLFYVFPESVPIPM 153

BLAST of Spo14816.1 vs. ExPASy Swiss-Prot
Match: NU4M_ARATH (NADH-ubiquinone oxidoreductase chain 4 OS=Arabidopsis thaliana GN=ND4 PE=2 SV=2)

HSP 1 Score: 75.9 bits (185), Expect = 4.400e-13
Identity = 41/47 (87.23%), Postives = 41/47 (87.23%), Query Frame = 1

		  

Query: 49  VGWSGMRSYGKEYITASLILEFLMIAVFCMLDLLLFYVLFESVPIPM 96
           VGWSGMRSYGKEYI A LI EFLMIAVFCMLDLLLFYV  ESV IPM
Sbjct: 107 VGWSGMRSYGKEYIIAFLICEFLMIAVFCMLDLLLFYVFPESVLIPM 153

BLAST of Spo14816.1 vs. ExPASy Swiss-Prot
Match: NU4M_MARPO (NADH-ubiquinone oxidoreductase chain 4 OS=Marchantia polymorpha GN=ND4 PE=3 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 1.800e-6
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = 1

		  

Query: 49  VGWSGMRSYGKEYITASLILEFLMIAVFCMLDLLLFYVLFESVPIPM 96
           VG+  ++SY KEY+ A  I E  +IAVFC LDLL+FYV FESV IPM
Sbjct: 107 VGFYSVKSYKKEYMIAFFICESFLIAVFCSLDLLIFYVFFESVLIPM 153

BLAST of Spo14816.1 vs. ExPASy Swiss-Prot
Match: NU4M_PROWI (NADH-ubiquinone oxidoreductase chain 4 OS=Prototheca wickerhamii GN=ND4 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.100e-6
Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = 1

		  

Query: 49  VGWSGMRSYGKEYITASLILEFLMIAVFCMLDLLLFYVLFESVPIPM 96
           V W+ +  Y KEY  A L+LE LM+ VF +LDLLLFY+ FESV IPM
Sbjct: 138 VSWNNIEVYVKEYCIAFLVLETLMLTVFSVLDLLLFYIFFESVLIPM 184

BLAST of Spo14816.1 vs. TAIR (Arabidopsis)
Match: ATMG00580.1 (NADH dehydrogenase subunit 4)

HSP 1 Score: 77.0 bits (188), Expect = 1.100e-14
Identity = 42/47 (89.36%), Postives = 42/47 (89.36%), Query Frame = 1

		  

Query: 49  VGWSGMRSYGKEYITASLILEFLMIAVFCMLDLLLFYVLFESVPIPM 96
           VGWSGMRSYGKEYITA LI EFLMIAVF MLDLLLFYV  ESVPIPM
Sbjct: 107 VGWSGMRSYGKEYITAFLIREFLMIAVFRMLDLLLFYVFPESVPIPM 153

The following BLAST results are available for this feature:
BLAST of Spo14816.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|323435103|ref|YP_004222321.1|3.4e-2196.6hypothetical protein BevumaM_p... [more]
gi|586829798|gb|AHJ81038.1|5.9e-1891.5orf175 (mitochondrion) [Panax ... [more]
gi|992272480|gb|KXG32594.1|1.7e-1788.1hypothetical protein SORBI_003... [more]
gi|944221342|gb|KQK85789.1|1.7e-1788.1hypothetical protein SETIT_020... [more]
gi|242053077|ref|XP_002455684.1|1.7e-1788.1hypothetical protein SORBIDRAF... [more]
back to top
BLAST of Spo14816.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
E6ZDW4_BETVM2.3e-2196.6Putative uncharacterized prote... [more]
G2XLU3_BETMA2.3e-2196.6Uncharacterized protein OS=Bet... [more]
A0A096XFA7_PANGI4.1e-1891.5Orf175 OS=Panax ginseng GN=orf... [more]
W5AVM2_WHEAT1.2e-1788.1Uncharacterized protein OS=Tri... [more]
W5DTC0_WHEAT1.2e-1788.1Uncharacterized protein OS=Tri... [more]
back to top
BLAST of Spo14816.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
NU4M_WHEAT8.9e-1487.2NADH-ubiquinone oxidoreductase... [more]
NU4M_BRACM2.0e-1389.3NADH-ubiquinone oxidoreductase... [more]
NU4M_ARATH4.4e-1387.2NADH-ubiquinone oxidoreductase... [more]
NU4M_MARPO1.8e-661.7NADH-ubiquinone oxidoreductase... [more]
NU4M_PROWI3.1e-659.5NADH-ubiquinone oxidoreductase... [more]
back to top
BLAST of Spo14816.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
ATMG00580.11.1e-1489.3NADH dehydrogenase subunit 4[more]
back to top
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR22773NADH DEHYDROGENASEcoord: 49..96
score: 1.3
NoneNo IPR availablePANTHERPTHR22773:SF88NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4coord: 49..96
score: 1.3

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006120 mitochondrial electron transport, NADH to ubiquinone
biological_process GO:0010207 photosystem II assembly
biological_process GO:0015979 photosynthesis
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:1902600 proton transmembrane transport
biological_process GO:0018298 protein-chromophore linkage
biological_process GO:0009451 RNA modification
biological_process GO:0009772 photosynthetic electron transport in photosystem II
biological_process GO:0009769 photosynthesis, light harvesting in photosystem II
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0006814 sodium ion transport
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009507 chloroplast
cellular_component GO:0009523 photosystem II
cellular_component GO:0010287 plastoglobule
cellular_component GO:0005840 ribosome
cellular_component GO:0030076 light-harvesting complex
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009522 photosystem I
cellular_component GO:0005747 mitochondrial respiratory chain complex I
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0045157 electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0005506 iron ion binding
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
molecular_function GO:0046872 metal ion binding
RNA-Seq Expression