Spo14866 (gene)

Overview
NameSpo14866
Typegene
OrganismSpinacia oleracea (Spinach)
Description50S ribosomal protein L28
LocationSuper_scaffold_65 : 1528514 .. 1531246 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCATATTATCATCCACCTATTTCAATCTTCAAAAAAGCAGATAACAAGACACAAGGAGAAGAGGAGAGAGAAAAACAGCAATGGCAGCTTCAGGAATGTTGATAAGCAACCCAAGCAATGTGTGCTTCCGCAAACCCCAATTCTCATGCTCATTGAAACCCAAAGCAACAGTTTCAGAGCTAGGGTTTCTCACTTCCCAACTCAGTGGCATTCAAATTTCGCCTTCTCCACTCTTCCCCATCATTAGCAAACCCATTTCCGCGCCTCTCAAACCTTCGCTTCAGCCTGTTGCTCGTAAGTACCCTTTTCTCAATTTTGTATTCAATCCTCTGTTTGTTGGAATTGCTGTGGTTTAACTTTTGTAGGTTTGCAATTTTTCTGAGTTTTGTTGCTCGCCCCCCAATTTTTTCATTAGTTCTCTGGTTAATACAGTATTGTGTTCAAATTGTTTGCATCTTTTGTGATTTTTCGGTCTGTGATTAAATTTTGCAATTGGCTTAATTGCTAATATTCGAGCTGAGAATTTGAGCTAAAATTAAGGGCATTATCTGAATTATTATTGGGGTAGAATTGGAGAGCATAATTCTTGTATGTTGAGGAACTTTATGAGCGGTGAATTAACTAGGGATGCTCTTGATTTTCGCCAAATGCTGTTTGGTTGAACATGTTTTTGATCATGGATTCATGCTATACCCTTACTTTAGCTTCACCACCAGGTTGTGTTTTCTGGTAAACCTTTAATACACAAAGTATGTGTAGGTAACACACTACAAGATAATCACTTTATAGAGATGAGGGATTCTTCTCTAATTACGACCTCCCTGTAGAGGTGGTCTCAACATTTTTTAGGACGGATTTTTGGCAAATCTATTACAAATTTGACACGGAATTTTGGAACTCCATATACAATTCCATCTCAGTTATTATTTAGAGACAAAATGTTAGTAACCATCTCAAGTTTGAGATGTTTATAGTATCCGTCTCTAATAATGCATAGTTTTGTAGTGACACCGTTTCTCCATGTCGGTGTTATTTGTTTGAGGTGAGGGTTGGGGTTAGCAAAGGAAAAAGTTTAGTTATCTTGCAAATTTGGGCCATGTTGTTGGATGAACCTGTCACATGTTGCTATGAGATTTTTGTTATGATGGATGATGTTAATTGGGTTTGAGTTGCTCTAGGAGCCTTGAGAAGATTGAGTAGCTGTTAATTTAGGTTCTAGTGGATTTGCCCCCATAAAGACCTGAGAGAAATGAAAATTCTATTCCCATGTCCCCTTCTGTTGCTCGAGATGTTACATGTTAATTGTTATTGTCATCTTTGCTGATGGCATTTCAGGTTGCAGAATTTTGATATTGGGGACTAGTTTTAAATTTCTATTGGAACTTTTTCTTTTAGAATTTGATTTGTGTAGCCTTTGAAACTAAGGTTTTCAAGTTCAATTTTCGTTTTATACTTGTATGATAAAAAGCTTGTTTGAAGTAGAAAAGGATGTTTTGAAATGTATGAAATCTGTTTGCATAGGGCACATTTGGTATGTGGGAATAAATGAAGGTGATGGTAATGAATTAGATGTTAATTTGGAAGGAAAGTCATATGCCAAAGTCCATGATAATACTTGTCCTTCTTCAAATATCTTTTTTTCTTCATAAATTTTCATTACGGAGTACTACTTTTATGATATGGAGTGGTAATACTGGTAAAGGAAATTTATGAAAAATAACACATGGTTGGACTTTGGAGATGAAATTGTATTACTACGTACTATGTAATATGTATACATACTATCGAGAATTAAGATGGAGTTAATCTTAAAGAATTACAGAGTACATGTTTGTTTTTATTAGCATGATTCATCATCCCTATCAAAAGGAGCCGTAAGCAGATCTGGCAGAAGTAGTGATATTATGCCACTGTGTATGAATCTGAATAATTGTTGATTGTCTTCTAATTCCCTGGCAACGATTTCAATTTGATCTGATATTGGTGTCTAACCCACTACTGTCTGTGATACTTATTGTGATTGAGGTTATTAATTTAACGAGTTGAGTAATTATCAGGCAGAATATGTCCGTTCACTGGGAAGAAGTCGAACAAGGCTAACAGGGTTTCCCACTCAAACCACAAAACAAAAAGATTGCAGTTTGTGAACCTGCAATACAAGAGAGTGTGGTGGGAAGCTGGTAAAAGGTTTGTGAAACTCAGGTTATCAACCAAGGCTTTGAAGACCATAGAGAAGAACGGGTTGGATGCTGTTGCGAAGAAGGCAGGGATAGACCTTAGAAAGGAATAATAGGATGGACGTGTTTGTAAAGCACGAACAAGGCCGAATTTTCTTGTTTTGTTATCCTACCTTGTTAGTGATTGTCTTATATTGTAATCAACATTTTCCCTAAGCTAGGTTTTTTTTATAATCTGTAGCATGTTGAGCAAATTAATGAAAAAGAAAATTCAGGAGGTCAGTGTTGCAATATTTGGTTAATTGTTTTGTAAAGCAGGCATTACTGATCAGTAAATTTGGTTCTGCATAACAATTTTGCATTTCACTTGATGGTGTTTGTATTGTACTATTGTATTGATGTAAAGCTTTAGACAGTGAATTGCATATGGTAGAGAGCGAACAACTCGATATACTCTCAGTTAAAGAAAGTCCTGTAACGGAGTCTCTTCTCCATCGGAACTGGTTTTGCAGCTGTAATTGAAGTTGTTTGACTAAAATGCGATTTATGTACCCG

mRNA sequence

ATCATATTATCATCCACCTATTTCAATCTTCAAAAAAGCAGATAACAAGACACAAGGAGAAGAGGAGAGAGAAAAACAGCAATGGCAGCTTCAGGAATGTTGATAAGCAACCCAAGCAATGTGTGCTTCCGCAAACCCCAATTCTCATGCTCATTGAAACCCAAAGCAACAGTTTCAGAGCTAGGGTTTCTCACTTCCCAACTCAGTGGCATTCAAATTTCGCCTTCTCCACTCTTCCCCATCATTAGCAAACCCATTTCCGCGCCTCTCAAACCTTCGCTTCAGCCTGTTGCTCGCAGAATATGTCCGTTCACTGGGAAGAAGTCGAACAAGGCTAACAGGGTTTCCCACTCAAACCACAAAACAAAAAGATTGCAGTTTGTGAACCTGCAATACAAGAGAGTGTGGTGGGAAGCTGGTAAAAGGTTTGTGAAACTCAGGTTATCAACCAAGGCTTTGAAGACCATAGAGAAGAACGGGTTGGATGCTGTTGCGAAGAAGGCAGGGATAGACCTTAGAAAGGAATAATAGGATGGACGTGTTTGTAAAGCACGAACAAGGCCGAATTTTCTTGTTTTGTTATCCTACCTTGTTAGTGATTGTCTTATATTGTAATCAACATTTTCCCTAAGCTAGGTTTTTTTTATAATCTGTAGCATGTTGAGCAAATTAATGAAAAAGAAAATTCAGGAGGTCAGTGTTGCAATATTTGGTTAATTGTTTTGTAAAGCAGGCATTACTGATCAGTAAATTTGGTTCTGCATAACAATTTTGCATTTCACTTGATGGTGTTTGTATTGTACTATTGTATTGATGTAAAGCTTTAGACAGTGAATTGCATATGGTAGAGAGCGAACAACTCGATATACTCTCAGTTAAAGAAAGTCCTGTAACGGAGTCTCTTCTCCATCGGAACTGGTTTTGCAGCTGTAATTGAAGTTGTTTGACTAAAATGCGATTTATGTACCCG

Coding sequence (CDS)

ATGGCAGCTTCAGGAATGTTGATAAGCAACCCAAGCAATGTGTGCTTCCGCAAACCCCAATTCTCATGCTCATTGAAACCCAAAGCAACAGTTTCAGAGCTAGGGTTTCTCACTTCCCAACTCAGTGGCATTCAAATTTCGCCTTCTCCACTCTTCCCCATCATTAGCAAACCCATTTCCGCGCCTCTCAAACCTTCGCTTCAGCCTGTTGCTCGCAGAATATGTCCGTTCACTGGGAAGAAGTCGAACAAGGCTAACAGGGTTTCCCACTCAAACCACAAAACAAAAAGATTGCAGTTTGTGAACCTGCAATACAAGAGAGTGTGGTGGGAAGCTGGTAAAAGGTTTGTGAAACTCAGGTTATCAACCAAGGCTTTGAAGACCATAGAGAAGAACGGGTTGGATGCTGTTGCGAAGAAGGCAGGGATAGACCTTAGAAAGGAATAA

Protein sequence

MAASGMLISNPSNVCFRKPQFSCSLKPKATVSELGFLTSQLSGIQISPSPLFPIISKPISAPLKPSLQPVARRICPFTGKKSNKANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo14866.1Spo14866.1mRNA


Homology
[Close]
BLAST of Spo14866.1 vs. NCBI nr
Match: gi|902212074|gb|KNA16864.1| (hypothetical protein SOVF_085320 [Spinacia oleracea])

HSP 1 Score: 290.0 bits (741), Expect = 2.300e-75
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1 

		  

Query: 1   MAASGMLISNPSNVCFRKPQFSCSLKPKATVSELGFLTSQLSGIQISPSPLFPIISKPIS 60
           MAASGMLISNPSNVCFRKPQFSCSLKPKATVSELGFLTSQLSGIQISPSPLFPIISKPIS
Sbjct: 1   MAASGMLISNPSNVCFRKPQFSCSLKPKATVSELGFLTSQLSGIQISPSPLFPIISKPIS 60

Query: 61  APLKPSLQPVARRICPFTGKKSNKANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVKLR 120
           APLKPSLQPVARRICPFTGKKSNKANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVKLR
Sbjct: 61  APLKPSLQPVARRICPFTGKKSNKANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVKLR 120

Query: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 149
           LSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 148
[Close]
BLAST of Spo14866.1 vs. NCBI nr
Match: gi|731320744|ref|XP_010670975.1| (PREDICTED: 50S ribosomal protein L28, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 241.1 bits (614), Expect = 1.200e-60
Identity = 128/150 (85.33%), Postives = 137/150 (91.33%), Query Frame = 1 

		  

Query: 2   AASGMLISNPS--NVCFRKPQFSCSLKPKATVSELGFLTSQLSGIQISPSPLFPII-SKP 61
           AASGMLISN +  NVCFRKPQFS S KPK+T+SELGFLTS+LSGI+IS SPL  II +KP
Sbjct: 5   AASGMLISNSTINNVCFRKPQFSTSFKPKSTISELGFLTSKLSGIKISLSPLSSIIINKP 64

Query: 62  ISAPLKPSLQPVARRICPFTGKKSNKANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVK 121
           IS PLKPSLQPVARRICPFTGKK N+AN+VSHSNHKTKR QFVNLQYKRVWWEAGKRF+K
Sbjct: 65  ISLPLKPSLQPVARRICPFTGKKPNRANKVSHSNHKTKRRQFVNLQYKRVWWEAGKRFLK 124

Query: 122 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 149
           LRLSTKALKTIEKNGLDAVAKKAGIDL KE
Sbjct: 125 LRLSTKALKTIEKNGLDAVAKKAGIDLSKE 154
[Close]
BLAST of Spo14866.1 vs. NCBI nr
Match: gi|118487864|gb|ABK95755.1| (unknown [Populus trichocarpa])

HSP 1 Score: 194.9 bits (494), Expect = 1.000e-46
Identity = 106/150 (70.67%), Postives = 124/150 (82.67%), Query Frame = 1 

		  

Query: 1   MAASGMLISNPSNVCFRKP-QFSCSLKPKATVSELGFLTSQLSGIQISPSPLFPIISKPI 60
           +   G+L+ N  ++CFRK  Q S S     +VSE+GF+TSQLSGI+IS +P      KP+
Sbjct: 8   VGVGGVLLGN--SICFRKTRQLSISKTSLVSVSEIGFVTSQLSGIRISYNP-----PKPL 67

Query: 61  SAPLKPSLQPV-ARRICPFTGKKSNKANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVK 120
           SAP  P+LQPV ARRICPFTGKK+N+AN+VS SNHKTK+LQFVNLQYKRVWWEAGKR+VK
Sbjct: 68  SAPFSPALQPVIARRICPFTGKKANRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRYVK 127

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 149
           LRLSTKALKTIEKNGLDAVAKKAGIDLRK+
Sbjct: 128 LRLSTKALKTIEKNGLDAVAKKAGIDLRKK 150
[Close]
BLAST of Spo14866.1 vs. NCBI nr
Match: gi|566189686|ref|XP_002315574.2| (hypothetical protein POPTR_0010s07920g [Populus trichocarpa])

HSP 1 Score: 194.5 bits (493), Expect = 1.300e-46
Identity = 106/146 (72.60%), Postives = 123/146 (84.25%), Query Frame = 1 

		  

Query: 5   GMLISNPSNVCFRKPQ-FSCSLKPKATVSELGFLTSQLSGIQISPSPLFPIISKPISAPL 64
           G+L+ N  ++CFRK Q  S S     +VSE+GF+TSQLSGI+IS +P      KP+SAP 
Sbjct: 15  GVLLGN--SICFRKTQQLSISKTSLVSVSEIGFVTSQLSGIRISYNP-----PKPLSAPF 74

Query: 65  KPSLQPV-ARRICPFTGKKSNKANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVKLRLS 124
            P+LQPV ARRICPFTGKK+N+AN+VS SNHKTK+LQFVNLQYKRVWWEAGKR+VKLRLS
Sbjct: 75  SPALQPVIARRICPFTGKKANRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRYVKLRLS 134

Query: 125 TKALKTIEKNGLDAVAKKAGIDLRKE 149
           TKALKTIEKNGLDAVAKKAGIDLRK+
Sbjct: 135 TKALKTIEKNGLDAVAKKAGIDLRKK 153
[Close]
BLAST of Spo14866.1 vs. NCBI nr
Match: gi|118489930|gb|ABK96762.1| (unknown [Populus trichocarpa x Populus deltoides])

HSP 1 Score: 193.0 bits (489), Expect = 3.800e-46
Identity = 105/146 (71.92%), Postives = 123/146 (84.25%), Query Frame = 1 

		  

Query: 5   GMLISNPSNVCFRKPQ-FSCSLKPKATVSELGFLTSQLSGIQISPSPLFPIISKPISAPL 64
           G+L+ N  ++CFRK Q  S S     +VSE+GF+TSQLSGI+IS +P      +P+SAP 
Sbjct: 15  GVLLGN--SICFRKTQQLSISKTSLVSVSEIGFVTSQLSGIRISYNP-----PEPLSAPF 74

Query: 65  KPSLQPV-ARRICPFTGKKSNKANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVKLRLS 124
            P+LQPV ARRICPFTGKK+N+AN+VS SNHKTK+LQFVNLQYKRVWWEAGKR+VKLRLS
Sbjct: 75  SPALQPVIARRICPFTGKKANRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRYVKLRLS 134

Query: 125 TKALKTIEKNGLDAVAKKAGIDLRKE 149
           TKALKTIEKNGLDAVAKKAGIDLRK+
Sbjct: 135 TKALKTIEKNGLDAVAKKAGIDLRKK 153
[Close]
BLAST of Spo14866.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RD02_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_085320 PE=3 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 1.600e-75
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1 

		  

Query: 1   MAASGMLISNPSNVCFRKPQFSCSLKPKATVSELGFLTSQLSGIQISPSPLFPIISKPIS 60
           MAASGMLISNPSNVCFRKPQFSCSLKPKATVSELGFLTSQLSGIQISPSPLFPIISKPIS
Sbjct: 1   MAASGMLISNPSNVCFRKPQFSCSLKPKATVSELGFLTSQLSGIQISPSPLFPIISKPIS 60

Query: 61  APLKPSLQPVARRICPFTGKKSNKANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVKLR 120
           APLKPSLQPVARRICPFTGKKSNKANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVKLR
Sbjct: 61  APLKPSLQPVARRICPFTGKKSNKANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVKLR 120

Query: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 149
           LSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LSTKALKTIEKNGLDAVAKKAGIDLRKE 148
[Close]
BLAST of Spo14866.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CWV5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g048600 PE=3 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 8.500e-61
Identity = 128/150 (85.33%), Postives = 137/150 (91.33%), Query Frame = 1 

		  

Query: 2   AASGMLISNPS--NVCFRKPQFSCSLKPKATVSELGFLTSQLSGIQISPSPLFPII-SKP 61
           AASGMLISN +  NVCFRKPQFS S KPK+T+SELGFLTS+LSGI+IS SPL  II +KP
Sbjct: 5   AASGMLISNSTINNVCFRKPQFSTSFKPKSTISELGFLTSKLSGIKISLSPLSSIIINKP 64

Query: 62  ISAPLKPSLQPVARRICPFTGKKSNKANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVK 121
           IS PLKPSLQPVARRICPFTGKK N+AN+VSHSNHKTKR QFVNLQYKRVWWEAGKRF+K
Sbjct: 65  ISLPLKPSLQPVARRICPFTGKKPNRANKVSHSNHKTKRRQFVNLQYKRVWWEAGKRFLK 124

Query: 122 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 149
           LRLSTKALKTIEKNGLDAVAKKAGIDL KE
Sbjct: 125 LRLSTKALKTIEKNGLDAVAKKAGIDLSKE 154
[Close]
BLAST of Spo14866.1 vs. UniProtKB/TrEMBL
Match: A9PHA2_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 6.900e-47
Identity = 106/150 (70.67%), Postives = 124/150 (82.67%), Query Frame = 1 

		  

Query: 1   MAASGMLISNPSNVCFRKP-QFSCSLKPKATVSELGFLTSQLSGIQISPSPLFPIISKPI 60
           +   G+L+ N  ++CFRK  Q S S     +VSE+GF+TSQLSGI+IS +P      KP+
Sbjct: 8   VGVGGVLLGN--SICFRKTRQLSISKTSLVSVSEIGFVTSQLSGIRISYNP-----PKPL 67

Query: 61  SAPLKPSLQPV-ARRICPFTGKKSNKANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVK 120
           SAP  P+LQPV ARRICPFTGKK+N+AN+VS SNHKTK+LQFVNLQYKRVWWEAGKR+VK
Sbjct: 68  SAPFSPALQPVIARRICPFTGKKANRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRYVK 127

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 149
           LRLSTKALKTIEKNGLDAVAKKAGIDLRK+
Sbjct: 128 LRLSTKALKTIEKNGLDAVAKKAGIDLRKK 150
[Close]
BLAST of Spo14866.1 vs. UniProtKB/TrEMBL
Match: B9HSH5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s07920g PE=3 SV=2)

HSP 1 Score: 194.5 bits (493), Expect = 9.100e-47
Identity = 106/146 (72.60%), Postives = 123/146 (84.25%), Query Frame = 1 

		  

Query: 5   GMLISNPSNVCFRKPQ-FSCSLKPKATVSELGFLTSQLSGIQISPSPLFPIISKPISAPL 64
           G+L+ N  ++CFRK Q  S S     +VSE+GF+TSQLSGI+IS +P      KP+SAP 
Sbjct: 15  GVLLGN--SICFRKTQQLSISKTSLVSVSEIGFVTSQLSGIRISYNP-----PKPLSAPF 74

Query: 65  KPSLQPV-ARRICPFTGKKSNKANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVKLRLS 124
            P+LQPV ARRICPFTGKK+N+AN+VS SNHKTK+LQFVNLQYKRVWWEAGKR+VKLRLS
Sbjct: 75  SPALQPVIARRICPFTGKKANRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRYVKLRLS 134

Query: 125 TKALKTIEKNGLDAVAKKAGIDLRKE 149
           TKALKTIEKNGLDAVAKKAGIDLRK+
Sbjct: 135 TKALKTIEKNGLDAVAKKAGIDLRKK 153
[Close]
BLAST of Spo14866.1 vs. UniProtKB/TrEMBL
Match: A9PK59_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 2.600e-46
Identity = 105/146 (71.92%), Postives = 123/146 (84.25%), Query Frame = 1 

		  

Query: 5   GMLISNPSNVCFRKPQ-FSCSLKPKATVSELGFLTSQLSGIQISPSPLFPIISKPISAPL 64
           G+L+ N  ++CFRK Q  S S     +VSE+GF+TSQLSGI+IS +P      +P+SAP 
Sbjct: 15  GVLLGN--SICFRKTQQLSISKTSLVSVSEIGFVTSQLSGIRISYNP-----PEPLSAPF 74

Query: 65  KPSLQPV-ARRICPFTGKKSNKANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVKLRLS 124
            P+LQPV ARRICPFTGKK+N+AN+VS SNHKTK+LQFVNLQYKRVWWEAGKR+VKLRLS
Sbjct: 75  SPALQPVIARRICPFTGKKANRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRYVKLRLS 134

Query: 125 TKALKTIEKNGLDAVAKKAGIDLRKE 149
           TKALKTIEKNGLDAVAKKAGIDLRK+
Sbjct: 135 TKALKTIEKNGLDAVAKKAGIDLRKK 153
[Close]
BLAST of Spo14866.1 vs. ExPASy Swiss-Prot
Match: RK28_TOBAC (50S ribosomal protein L28, chloroplastic OS=Nicotiana tabacum GN=RPL28 PE=1 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 2.900e-46
Identity = 97/125 (77.60%), Postives = 108/125 (86.40%), Query Frame = 1 

		  

Query: 24  SLKPKATVSELGFLTSQLSGIQISPSPLFPIISKPISAPLKPSLQPVARRICPFTGKKSN 83
           SL      SEL F+TSQLSG++IS S  F   S P+S P KPSLQPVARRICPFTGKKSN
Sbjct: 28  SLPQSKLSSELSFVTSQLSGLKIS-STHFISSSAPLSVPFKPSLQPVARRICPFTGKKSN 87

Query: 84  KANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGI 143
           +AN+VSHSNHKTK+LQFVNLQYKR+WWEAGKR+VKLRLSTKA+KTIEKNGLDAVAKKAGI
Sbjct: 88  RANKVSHSNHKTKKLQFVNLQYKRIWWEAGKRYVKLRLSTKAIKTIEKNGLDAVAKKAGI 147

Query: 144 DLRKE 149
           DL K+
Sbjct: 148 DLSKK 151
[Close]
BLAST of Spo14866.1 vs. ExPASy Swiss-Prot
Match: RK28_ARATH (50S ribosomal protein L28, chloroplastic OS=Arabidopsis thaliana GN=RPL28 PE=2 SV=2)

HSP 1 Score: 176.0 bits (445), Expect = 3.000e-43
Identity = 96/124 (77.42%), Postives = 108/124 (87.10%), Query Frame = 1 

		  

Query: 26  KPKATVSELGFLTSQLSGIQISPSPLFPIISKPISAPLKPSLQP-VARRICPFTGKKSNK 85
           K   T  ELGFLTSQLSG++IS +P   +I++ IS P  P +QP VARRICPFTGKK+N+
Sbjct: 22  KSTVTSKELGFLTSQLSGLRISYTPS-DVINR-ISLPSFPGIQPIVARRICPFTGKKANR 81

Query: 86  ANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGID 145
           AN+VS SNHKTK+LQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGID
Sbjct: 82  ANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGID 141

Query: 146 LRKE 149
           LRK+
Sbjct: 142 LRKK 143
[Close]
BLAST of Spo14866.1 vs. ExPASy Swiss-Prot
Match: RL28_THEEB (50S ribosomal protein L28 OS=Thermosynechococcus elongatus (strain BP-1) GN=rpmB PE=3 SV=2)

HSP 1 Score: 103.2 bits (256), Expect = 2.500e-21
Identity = 48/75 (64.00%), Postives = 62/75 (82.67%), Query Frame = 1 

		  

Query: 73  RICPFTGKKSNKANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKN 132
           R+C  TGKK+N A  +SHS+ +TK+LQ VNLQ+KRVWW  GKR+V+LRLSTKA+KT+E+ 
Sbjct: 3   RVCQLTGKKANNAYAISHSHRRTKKLQQVNLQWKRVWWPEGKRWVRLRLSTKAIKTLERK 62

Query: 133 GLDAVAKKAGIDLRK 148
           GL A AK+AG+DL K
Sbjct: 63  GLSAFAKEAGLDLNK 77
[Close]
BLAST of Spo14866.1 vs. ExPASy Swiss-Prot
Match: RL28_CYAP4 (50S ribosomal protein L28 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rpmB PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 4.200e-21
Identity = 48/75 (64.00%), Postives = 62/75 (82.67%), Query Frame = 1 

		  

Query: 73  RICPFTGKKSNKANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKN 132
           R+C  TGK++N A  VSHS+ +TK+LQ VNLQ+KR+WW  GKR+V+LRLSTKALKT+E  
Sbjct: 3   RVCQLTGKRANNAYAVSHSHRRTKKLQEVNLQWKRIWWPQGKRWVRLRLSTKALKTLEHK 62

Query: 133 GLDAVAKKAGIDLRK 148
           GLD+ A++AGIDL K
Sbjct: 63  GLDSFAREAGIDLNK 77
[Close]
BLAST of Spo14866.1 vs. ExPASy Swiss-Prot
Match: RL28_SYNP2 (50S ribosomal protein L28 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rpmB PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 4.200e-21
Identity = 49/75 (65.33%), Postives = 62/75 (82.67%), Query Frame = 1 

		  

Query: 73  RICPFTGKKSNKANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKN 132
           R C  TGKK+N A  VSHS+ +TK+LQ VNLQ+KRVWW  G RFV+LRLSTKA+KT+EK 
Sbjct: 3   RKCQITGKKANNAMAVSHSHRRTKKLQEVNLQWKRVWWPEGNRFVRLRLSTKAIKTLEKK 62

Query: 133 GLDAVAKKAGIDLRK 148
           G+DA+A++AGI+L K
Sbjct: 63  GIDAMAREAGINLNK 77
[Close]
BLAST of Spo14866.1 vs. TAIR (Arabidopsis)
Match: AT2G33450.1 (Ribosomal L28 family)

HSP 1 Score: 176.0 bits (445), Expect = 1.700e-44
Identity = 96/124 (77.42%), Postives = 108/124 (87.10%), Query Frame = 1 

		  

Query: 26  KPKATVSELGFLTSQLSGIQISPSPLFPIISKPISAPLKPSLQP-VARRICPFTGKKSNK 85
           K   T  ELGFLTSQLSG++IS +P   +I++ IS P  P +QP VARRICPFTGKK+N+
Sbjct: 22  KSTVTSKELGFLTSQLSGLRISYTPS-DVINR-ISLPSFPGIQPIVARRICPFTGKKANR 81

Query: 86  ANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGID 145
           AN+VS SNHKTK+LQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGID
Sbjct: 82  ANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGID 141

Query: 146 LRKE 149
           LRK+
Sbjct: 142 LRKK 143
The following BLAST results are available for this feature:
BLAST of Spo14866.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902212074|gb|KNA16864.1|2.3e-75100.hypothetical protein SOVF_0853... [more]
gi|731320744|ref|XP_010670975.1|1.2e-6085.3PREDICTED: 50S ribosomal prote... [more]
gi|118487864|gb|ABK95755.1|1.0e-4670.6unknown [Populus trichocarpa][more]
gi|566189686|ref|XP_002315574.2|1.3e-4672.6hypothetical protein POPTR_001... [more]
gi|118489930|gb|ABK96762.1|3.8e-4671.9unknown [Populus trichocarpa x... [more]
back to top
BLAST of Spo14866.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RD02_SPIOL1.6e-75100.Uncharacterized protein OS=Spi... [more]
A0A0J8CWV5_BETVU8.5e-6185.3Uncharacterized protein OS=Bet... [more]
A9PHA2_POPTR6.9e-4770.6Putative uncharacterized prote... [more]
B9HSH5_POPTR9.1e-4772.6Uncharacterized protein OS=Pop... [more]
A9PK59_9ROSI2.6e-4671.9Putative uncharacterized prote... [more]
back to top
BLAST of Spo14866.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RK28_TOBAC2.9e-4677.650S ribosomal protein L28, chl... [more]
RK28_ARATH3.0e-4377.450S ribosomal protein L28, chl... [more]
RL28_THEEB2.5e-2164.050S ribosomal protein L28 OS=T... [more]
RL28_CYAP44.2e-2164.050S ribosomal protein L28 OS=C... [more]
RL28_SYNP24.2e-2165.350S ribosomal protein L28 OS=S... [more]
back to top
BLAST of Spo14866.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT2G33450.11.7e-4477.4Ribosomal L28 family[more]
back to top
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001383Ribosomal protein L28HAMAPMF_00373Ribosomal_L28coord: 70..146
score: 1
IPR001383Ribosomal protein L28TIGRFAMsTIGR00009TIGR00009coord: 73..128
score: 6.4
IPR026569Ribosomal protein L28/L24PANTHERPTHR1352839S RIBOSOMAL PROTEIN L28, MITOCHONDRIALcoord: 5..147
score: 6.3
IPR026569Ribosomal protein L28/L24PFAMPF00830Ribosomal_L28coord: 73..131
score: 1.0
NoneNo IPR availableGENE3D2.30.170.40coord: 73..146
score: 4.6
NoneNo IPR availablePANTHERPTHR13528:SF650S RIBOSOMAL PROTEIN L28, CHLOROPLASTICcoord: 5..147
score: 6.3
NoneNo IPR availableunknownSSF143800L28p-likecoord: 73..145
score: 3.92

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0009060 aerobic respiration
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0009266 response to temperature stimulus
biological_process GO:0051788 response to misfolded protein
biological_process GO:0046686 response to cadmium ion
biological_process GO:0080129 proteasome core complex assembly
biological_process GO:0009853 photorespiration
biological_process GO:0006972 hyperosmotic response
biological_process GO:0007030 Golgi organization
biological_process GO:0006096 glycolytic process
biological_process GO:0006119 oxidative phosphorylation
biological_process GO:0015976 carbon utilization
biological_process GO:0015979 photosynthesis
biological_process GO:0010015 root morphogenesis
biological_process GO:0010075 regulation of meristem growth
biological_process GO:0008361 regulation of cell size
biological_process GO:0009664 plant-type cell wall organization
biological_process GO:0006412 translation
biological_process GO:0007389 pattern specification process
biological_process GO:0009926 auxin polar transport
biological_process GO:0048653 anther development
biological_process GO:0006833 water transport
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0006007 glucose catabolic process
biological_process GO:0009058 biosynthetic process
biological_process GO:0006979 response to oxidative stress
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0019538 protein metabolic process
biological_process GO:1901576 organic substance biosynthetic process
biological_process GO:0009987 cellular process
biological_process GO:0044260 cellular macromolecule metabolic process
biological_process GO:0044262 cellular carbohydrate metabolic process
biological_process GO:0044249 cellular biosynthetic process
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0005986 sucrose biosynthetic process
biological_process GO:0006000 fructose metabolic process
biological_process GO:0010103 stomatal complex morphogenesis
biological_process GO:0009409 response to cold
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0019253 reductive pentose-phosphate cycle
biological_process GO:0043085 positive regulation of catalytic activity
biological_process GO:0009657 plastid organization
biological_process GO:0006013 mannose metabolic process
biological_process GO:0000023 maltose metabolic process
biological_process GO:0019761 glucosinolate biosynthetic process
biological_process GO:0006094 gluconeogenesis
biological_process GO:0009231 riboflavin biosynthetic process
biological_process GO:0009832 plant-type cell wall biogenesis
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0006612 protein targeting to membrane
biological_process GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway
biological_process GO:0015986 ATP synthesis coupled proton transport
biological_process GO:0009697 salicylic acid biosynthetic process
biological_process GO:0006364 rRNA processing
biological_process GO:0010200 response to chitin
biological_process GO:0010363 regulation of plant-type hypersensitive response
biological_process GO:0043900 regulation of multi-organism process
biological_process GO:0010310 regulation of hydrogen peroxide metabolic process
biological_process GO:0010207 photosystem II assembly
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0009772 photosynthetic electron transport in photosystem II
biological_process GO:0009773 photosynthetic electron transport in photosystem I
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0031348 negative regulation of defense response
biological_process GO:0000165 MAPK cascade
biological_process GO:0009867 jasmonic acid mediated signaling pathway
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0019760 glucosinolate metabolic process
biological_process GO:0009595 detection of biotic stimulus
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0050832 defense response to fungus
biological_process GO:0006537 glutamate biosynthetic process
biological_process GO:0042967 obsolete acyl-carrier-protein biosynthetic process
biological_process GO:0006508 proteolysis
biological_process GO:0042450 arginine biosynthetic process via ornithine
biological_process GO:0006561 proline biosynthetic process
biological_process GO:0016310 phosphorylation
cellular_component GO:0009507 chloroplast
cellular_component GO:0009349 riboflavin synthase complex
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
cellular_component GO:0009579 thylakoid
cellular_component GO:0031977 thylakoid lumen
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0010287 plastoglobule
cellular_component GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0009840 chloroplastic endopeptidase Clp complex
cellular_component GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)
cellular_component GO:0048046 apoplast
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009523 photosystem II
cellular_component GO:0010319 stromule
cellular_component GO:0005737 cytoplasm
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009535 chloroplast thylakoid membrane
molecular_function GO:0005524 ATP binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0008236 serine-type peptidase activity
molecular_function GO:0004601 peroxidase activity
molecular_function GO:0004252 serine-type endopeptidase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0050278 sedoheptulose-bisphosphatase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity
molecular_function GO:0019843 rRNA binding
molecular_function GO:0046961 proton-transporting ATPase activity, rotational mechanism
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0004427 inorganic diphosphatase activity
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism
molecular_function GO:0004042 acetyl-CoA:L-glutamate N-acetyltransferase activity
molecular_function GO:0003991 acetylglutamate kinase activity
molecular_function GO:0016740 transferase activity
molecular_function GO:0000906 6,7-dimethyl-8-ribityllumazine synthase activity
molecular_function GO:0034618 arginine binding
molecular_function GO:0004349 glutamate 5-kinase activity
molecular_function GO:0051920 peroxiredoxin activity
RNA-Seq Expression