Spo14906 (gene)

Overview
NameSpo14906
Typegene
OrganismSpinacia oleracea (Spinach)
Description30S ribosomal protein S20, chloroplastic
Locationchr4 : 90987422 .. 90990913 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCATTACTCAGTTTTTAAACGTTAAAAAATCGAGCAAATATCAACGTCGCGAAAATTAAGTGTTGCAAATTAGGGAGTAACGATTAAGAGATGGAGTGGGCGTAAAAGGGCAAAAGAGGAATCCAATCTGTTGCGGATAAGAGAAGCTCTAGTGTGTCAAATTAAGATCCCAACCCCAAACACACACAGAAGAGAGAGCGCCAAAGATAGTGAGAACTGAGAAGGAGATAATGGCTGCCATAAGCATGGCTTGCGTTTCTTCACAATGCTTATCCATTTCTTCCAAGCTTCATAATCTCTCTTTTTCTTCAACCCAATTTCCTAATTCATCACTCAAACCTCTCACTTTCTCCGCTAACTTATCTCAACCTCTTTTTTCTCAAGGTAAAATTTACGACTTTTTCATTGTTTCTTGCCTTCTGTTTCCTACAAGTTCATTTCTTACATTTGTATTATTTTGGTTTTTGATTGTTGGCTTTTATGGCGTTTTTCATGTGGGTTTCAATTTGGTGATATTATATCGATTTGATGTTATTGGTCTTGAATTTCAGGAAATTTTGGGACCATTTTTTTTTCTCTCTGATGTCAATGTGTAATTAAGCCAATTCTTTTTCTTTTGAGACTATTATATTTGATTTTTGCTGGATTGAGGTTTGAAATGTGGAGGATTTGAGGGTTGCATAATTAGGGTGTGTTCAATTGCATTAAGTTTAACTTGGTATTTTTAATGAATTGTTAATGGCAGCCTAGTTTTATTGTATAAGCTGATTGGAGGGTTTTGTTTATGATAATTTTAGTCAATAGTATGTGTATTTTTCTGAAAGAATGGTGAGTTCTAACATAATTGACCCTTCAGAAACTAATGCTCGTTCAAAGTGTGACAGCCAGTATGTGCTTAAGGATGAAAGGCTTGTATGATGTAGTTTTGTACCGTTCAACCTTCATCTTTTTTCAGAAGCGATGTTGCTCAATGTCTTGAACTCTTCATTTCACCTCAAGCCCTCAAGTAGCCTGTCCAATGACTTGGACATGGTACTTGACAGCTGAAGCTTTATTTAAAACCAATAAGCTTCATAAAGTTTCAAGAATGAGTGAGTTTGACGCTTACACTAGTCGTGGCTTAAGTCTGAGTAGCATTGACAACATTACCCTGCTGTGATATTTAGTTTTCCCTATCTTTTAACATGACATATTCTTGTCTTTCAGAGTTGGTTTTTATGTAAATTGGTGACAAAATGATGCTGACCTAATTTCATTGAAATTCTATGGCTGCCGTATTCTAGGATGCTCGTCTCTTGGCTCATTCCAGCGACGTGGCTTCTCAGTGGTCTGTGAGGTTGCCACTCTAAAGAAGGCTGATTCTGCAGCTAAAAGAACTCGCCAAGCAGAGACTCGGCGTCTTAGGAACAAAGCTCGCAAATCTGAGGTTAAGACTCGCATGAGGAAGGTAACTTGATATTATCCTGTTAATTAGCTTCTTCGTTTTGATTCTGGTTTGATATGTTTTGTTGTGGTCTCTTGTGTTTAAGTGAATTGCGTTCTCATGATGTGTTTTTGAATTCTTTATTCCACGAGGTTCGATGTGCCATTCGTATGAGAAATATATTGAGGAACCATAGTGTAGTTCCGTCTCTGATTTCTTTTGGTAGTTAGGACCTATGGATCCTATGGAATAATTCAGTCTTAGAAGTCTGTTGCTATACTCTAAGAGTATGAATATATCTTCCAAATATGGTGCTCTGTTGGTCCAATTATCTTGATTCACTAAGTGGCTTTGACTTGATACTCTAGTATTAAGCGAAAGATGTTGCTTTGGCTTGATCATGCTGGGAAGATTCTAGTGAAGGAGAGTTGAGAGTGCTAGCCTGCTAGGGATGTCGCCTAAAATTAGAATCTCCCCAGTTTCCTTCTGTGGTGAGTTTAAAAGGGGTAGACGCAGATTCAATTACCGACACTGCTACTGCCTGACATCAACATACACATTTCCCAAAGTCTCTAAAGAGGGTTATAGACTTATAGTCAACATTTTATTTTTGGGAGGGGGTTTAGTTTTTGTTTTGGTGTACCACCCGGTTCACCTTTAGGGCTAATCCGGATTCGGGGCGAGTTCTGACTTCTAAATGGATAGGTTCCAGTCCCGGGAGGGGGTTTAGTGACTTCAATCTTGTGGGTCACTAGATGTTAGCGGTCCTAGACCTATAATAGTAATACTATTGAGGTTGTTTTTTATTAGATCACTGATCCGATAGTGCAACAAGCATGCTACTTCTTCTTTATCATTTTAGAATTGGTGTTTAGTTTCTTTTGGCGAAAGCTTTTGTTAGAACATTTGAAGGGGTATGTAACAGGTTTTCCCATGAAAAGATGAGTCTATTGTGCCTATCTTAATCTCAAAAACAAAGAAAACATCCATGCTTCTTGACAATAAATAGGAATTGGCCAACAGTTTAAGTAGCATTTGGATTTACTTCACCGGATTCTAAAGTCAAAGAATTGTGAATCTTTTGACTCCACTGAAATGGGCAGAGTGGCGGACACTCTATCTCAGCACCTTTTGAACAATTGGGCGTCCGTTAGCCACATAATTTGAGTGCTATCAGTGACCACTAAAATGCATCTTGTATTCTCATCATCATATGTGATCTCTCTTTATTCATTCGATATTAACCAAATGAAATTAATTTATCTACCTACCGACTGTTGCTCACTTCATGAAAAAGCCAAAAGTCGGATCAAGTTTCCTCTTTCTGGAAGAGAAAACGCTCTCATAGTGGTTTTCTCACAACTTACATCTCCTTTTGTCACCTTTCTGTGAACACAATGGAAATATCAAGAAGTTAAGACAGCCTACTCTACGAGTCTATGTAGTTAAGAAGTCCTTGCCAGGATATGCTTGTAAGAGTTGTAACAATTCCGTTGGATTTTCCCTAAATTTCAGTTCAGGCTTTTATGCATGAGTTTGCTGCCTATAGTGACTGTAGATGTAACCATTACGTAAACCAATATAAAGCCTTTTAAAAGCCTCTTATGATTGGCCTGACCGCGATTGTACCTCATTGTCATCTTTGTCCGTGAGCGAATTTCTAGGGAGAAAATTTCTAGGGACATTAGTGACTAGATAAATTGAATCATTCTTGCAAAAACATGTTGTGGCTGATTTAGTAGAAGCCCGTGTATGGCATCAATTTAAGCTATTAACAGGAAAAAATTGTGTTAGAAATGATTCTGAGTTATTTGTTTTCATATTATTTACTTCAGGTTTTTGAAGCATTGGATGCGTTGAAGAAGAAAAGCGGTGCCAGCACAGAAGAACTTGTACCAATAGACAATCTGATCGCAGAAGCTTATTCAGCCATAGACAAGGCAGTGGTGAAGGGTACCCTACATCGGAACACTGCTGCACGCCGTAAATCTCGGCTGGCTCGAAACAAGAAGGTTGTGGAGATCCATCATGGTTGGTACACACCTTCCCTAGCACCAACCAATGTCTAG

mRNA sequence

TCATTACTCAGTTTTTAAACGTTAAAAAATCGAGCAAATATCAACGTCGCGAAAATTAAGTGTTGCAAATTAGGGAGTAACGATTAAGAGATGGAGTGGGCGTAAAAGGGCAAAAGAGGAATCCAATCTGTTGCGGATAAGAGAAGCTCTAGTGTGTCAAATTAAGATCCCAACCCCAAACACACACAGAAGAGAGAGCGCCAAAGATAGTGAGAACTGAGAAGGAGATAATGGCTGCCATAAGCATGGCTTGCGTTTCTTCACAATGCTTATCCATTTCTTCCAAGCTTCATAATCTCTCTTTTTCTTCAACCCAATTTCCTAATTCATCACTCAAACCTCTCACTTTCTCCGCTAACTTATCTCAACCTCTTTTTTCTCAAGGATGCTCGTCTCTTGGCTCATTCCAGCGACGTGGCTTCTCAGTGGTCTGTGAGGTTGCCACTCTAAAGAAGGCTGATTCTGCAGCTAAAAGAACTCGCCAAGCAGAGACTCGGCGTCTTAGGAACAAAGCTCGCAAATCTGAGGTTAAGACTCGCATGAGGAAGGTTTTTGAAGCATTGGATGCGTTGAAGAAGAAAAGCGGTGCCAGCACAGAAGAACTTGTACCAATAGACAATCTGATCGCAGAAGCTTATTCAGCCATAGACAAGGCAGTGGTGAAGGGTACCCTACATCGGAACACTGCTGCACGCCGTAAATCTCGGCTGGCTCGAAACAAGAAGGTTGTGGAGATCCATCATGGTTGGTACACACCTTCCCTAGCACCAACCAATGTCTAG

Coding sequence (CDS)

ATGGCTGCCATAAGCATGGCTTGCGTTTCTTCACAATGCTTATCCATTTCTTCCAAGCTTCATAATCTCTCTTTTTCTTCAACCCAATTTCCTAATTCATCACTCAAACCTCTCACTTTCTCCGCTAACTTATCTCAACCTCTTTTTTCTCAAGGATGCTCGTCTCTTGGCTCATTCCAGCGACGTGGCTTCTCAGTGGTCTGTGAGGTTGCCACTCTAAAGAAGGCTGATTCTGCAGCTAAAAGAACTCGCCAAGCAGAGACTCGGCGTCTTAGGAACAAAGCTCGCAAATCTGAGGTTAAGACTCGCATGAGGAAGGTTTTTGAAGCATTGGATGCGTTGAAGAAGAAAAGCGGTGCCAGCACAGAAGAACTTGTACCAATAGACAATCTGATCGCAGAAGCTTATTCAGCCATAGACAAGGCAGTGGTGAAGGGTACCCTACATCGGAACACTGCTGCACGCCGTAAATCTCGGCTGGCTCGAAACAAGAAGGTTGTGGAGATCCATCATGGTTGGTACACACCTTCCCTAGCACCAACCAATGTCTAG

Protein sequence

MAAISMACVSSQCLSISSKLHNLSFSSTQFPNSSLKPLTFSANLSQPLFSQGCSSLGSFQRRGFSVVCEVATLKKADSAAKRTRQAETRRLRNKARKSEVKTRMRKVFEALDALKKKSGASTEELVPIDNLIAEAYSAIDKAVVKGTLHRNTAARRKSRLARNKKVVEIHHGWYTPSLAPTNV
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo14906.1Spo14906.1mRNA


Homology
[Close]
BLAST of Spo14906.1 vs. NCBI nr
Match: gi|731329227|ref|XP_010675477.1| (PREDICTED: 30S ribosomal protein S20, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 277.3 bits (708), Expect = 1.900e-71
Identity = 153/186 (82.26%), Postives = 164/186 (88.17%), Query Frame = 1 

		  

Query: 1   MAAISMACVSSQCLSISSKLHNLSF---SSTQFPNSSLKPLTFSANLSQPLFSQGCSSLG 60
           MAAISMACVSSQCLS+SSKL NL+    SSTQ PNS+LKPL+FSAN SQ +FSQGCSS  
Sbjct: 1   MAAISMACVSSQCLSLSSKLQNLTLSSPSSTQLPNSALKPLSFSANFSQSVFSQGCSSFS 60

Query: 61  SFQRRGFSVVCEVATLKKADSAAKRTRQAETRRLRNKARKSEVKTRMRKVFEALDALKKK 120
           +FQRR  SVVCE A  K ADSAAKR RQAETRRLRNKARKSEVKTRMRKVFEALD LKKK
Sbjct: 61  TFQRRTSSVVCEAAPQKTADSAAKRARQAETRRLRNKARKSEVKTRMRKVFEALDVLKKK 120

Query: 121 SGASTEELVPIDNLIAEAYSAIDKAVVKGTLHRNTAARRKSRLARNKKVVEIHHGWYTPS 180
           +G + EELVPIDNL+AEAYSAIDKAVVKG+LHRNTAARRKSRLARNKKVVEIHHGWYTP+
Sbjct: 121 TGPAPEELVPIDNLLAEAYSAIDKAVVKGSLHRNTAARRKSRLARNKKVVEIHHGWYTPA 180

Query: 181 LAPTNV 184
            APT V
Sbjct: 181 SAPTTV 186
[Close]
BLAST of Spo14906.1 vs. NCBI nr
Match: gi|703136586|ref|XP_010106195.1| (hypothetical protein L484_009619 [Morus notabilis])

HSP 1 Score: 199.9 bits (507), Expect = 3.800e-48
Identity = 115/182 (63.19%), Postives = 135/182 (74.18%), Query Frame = 1 

		  

Query: 3   AISMACVSSQCLSISSKLHNLSFSSTQFPNSSLKPLTFSANLSQPLFSQGCSSLGSFQR- 62
           A ++ C+SS CL++ SKL +LS S +   +S    L+FSA LS   FS+GC S+ + QR 
Sbjct: 2   AATIQCLSSSCLALPSKLRSLSISGSSHSSS----LSFSATLSHDFFSKGCLSMNAVQRT 61

Query: 63  --RGFSVVCEVATLKKADSAAKRTRQAETRRLRNKARKSEVKTRMRKVFEALDALKKKSG 122
             R  +VVCE A  KKADSAAKR RQAE RR+ NKARKSEVKTRM+KV EALD LKKK  
Sbjct: 62  MRRSAAVVCEAAPTKKADSAAKRARQAEKRRIYNKARKSEVKTRMKKVLEALDTLKKKQD 121

Query: 123 ASTEELVPIDNLIAEAYSAIDKAVVKGTLHRNTAARRKSRLARNKKVVEIHHGWYTPSLA 182
           A  EE++P++ LIAEAYS IDKAV  GTLHRNT ARRKSRLAR KK VEIHHGWYTP+ A
Sbjct: 122 AQAEEVLPVEKLIAEAYSIIDKAVKVGTLHRNTGARRKSRLARRKKAVEIHHGWYTPTPA 179
[Close]
BLAST of Spo14906.1 vs. NCBI nr
Match: gi|743901055|ref|XP_011043839.1| (PREDICTED: 30S ribosomal protein S20, chloroplastic [Populus euphratica])

HSP 1 Score: 193.7 bits (491), Expect = 2.700e-46
Identity = 109/171 (63.74%), Postives = 128/171 (74.85%), Query Frame = 1 

		  

Query: 11  SQCLSISSKLHNLSFSSTQFPNSSLKPLTFSANLSQPLFSQGCSSLGSFQR--RGFSVVC 70
           S CL +  KL NLS +ST    S+   L+FS++LS  +F++GC S+ + QR    FS+VC
Sbjct: 7   SPCLGLPPKLKNLSLNSTTCSTSTFSSLSFSSSLSHSIFNKGCLSMRTTQRSIHNFSIVC 66

Query: 71  EVATLKKADSAAKRTRQAETRRLRNKARKSEVKTRMRKVFEALDALKKKSGASTEELVPI 130
           E    KKADSA KRTRQAE RR+ NKARKSEVKTRM+KV EALD LKKK  A  EE++PI
Sbjct: 67  ESTPKKKADSAEKRTRQAEKRRIYNKARKSEVKTRMKKVLEALDDLKKKPEAQFEEVLPI 126

Query: 131 DNLIAEAYSAIDKAVVKGTLHRNTAARRKSRLARNKKVVEIHHGWYTPSLA 180
           + LIAEAYS IDKA+  GTLHRNT ARRKSRLAR KK VEIHHGWYTP+ A
Sbjct: 127 EKLIAEAYSVIDKAIKVGTLHRNTGARRKSRLARRKKAVEIHHGWYTPAPA 177
[Close]
BLAST of Spo14906.1 vs. NCBI nr
Match: gi|566153920|ref|XP_006370215.1| (chloroplast 30S ribosomal protein S20 [Populus trichocarpa])

HSP 1 Score: 191.8 bits (486), Expect = 1.000e-45
Identity = 108/171 (63.16%), Postives = 128/171 (74.85%), Query Frame = 1 

		  

Query: 11  SQCLSISSKLHNLSFSSTQFPNSSLKPLTFSANLSQPLFSQGCSSLGSFQR--RGFSVVC 70
           S CL +  KL NLS +ST    S+   L+FS++LS  +F++GC S+ + QR    FS+VC
Sbjct: 7   SPCLGLPPKLKNLSLNSTTCSTSTFSSLSFSSSLSHSIFNKGCLSMRTTQRSIHNFSIVC 66

Query: 71  EVATLKKADSAAKRTRQAETRRLRNKARKSEVKTRMRKVFEALDALKKKSGASTEELVPI 130
           E    KKADSA KRTRQAE RR+ NKARKSEVKTRM+KV EALD LKKK  A  EE++PI
Sbjct: 67  ESTPKKKADSAEKRTRQAEKRRVYNKARKSEVKTRMKKVLEALDDLKKKPEAQFEEVLPI 126

Query: 131 DNLIAEAYSAIDKAVVKGTLHRNTAARRKSRLARNKKVVEIHHGWYTPSLA 180
           + LIAEAYS IDKA+  GTLHRNT ARRKSRLAR KK VEIHHGWY+P+ A
Sbjct: 127 EKLIAEAYSVIDKAIKVGTLHRNTGARRKSRLARRKKAVEIHHGWYSPAPA 177
[Close]
BLAST of Spo14906.1 vs. NCBI nr
Match: gi|449456625|ref|XP_004146049.1| (PREDICTED: 30S ribosomal protein S20, chloroplastic [Cucumis sativus])

HSP 1 Score: 189.9 bits (481), Expect = 4.000e-45
Identity = 111/178 (62.36%), Postives = 132/178 (74.16%), Query Frame = 1 

		  

Query: 6   MACVSSQCLSISSKLHNLSFS--STQFP----NSSLKPLTFSANLSQPLFSQGCSSLGSF 65
           MA  +  C S+SSK  NLS +  S+  P    +S+L+ L+FS+N+S   FS GC S+   
Sbjct: 1   MAAAAITCFSLSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60

Query: 66  QR-RGFSVVCEVATLKKADSAAKRTRQAETRRLRNKARKSEVKTRMRKVFEALDALKKKS 125
           +R   +SVVCE A   K DSAAKR RQAE RR+ NKARKSE+KTRM+KV EALD LKKK+
Sbjct: 61  ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120

Query: 126 GASTEELVPIDNLIAEAYSAIDKAVVKGTLHRNTAARRKSRLARNKKVVEIHHGWYTP 177
            A +EE++PI+ LIAEAYS IDKAV  GTLHRNTAARRKSRLAR KK VEIHHGWYTP
Sbjct: 121 EAQSEEVLPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTP 178
[Close]
BLAST of Spo14906.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CM80_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g086660 PE=3 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 1.300e-71
Identity = 153/186 (82.26%), Postives = 164/186 (88.17%), Query Frame = 1 

		  

Query: 1   MAAISMACVSSQCLSISSKLHNLSF---SSTQFPNSSLKPLTFSANLSQPLFSQGCSSLG 60
           MAAISMACVSSQCLS+SSKL NL+    SSTQ PNS+LKPL+FSAN SQ +FSQGCSS  
Sbjct: 1   MAAISMACVSSQCLSLSSKLQNLTLSSPSSTQLPNSALKPLSFSANFSQSVFSQGCSSFS 60

Query: 61  SFQRRGFSVVCEVATLKKADSAAKRTRQAETRRLRNKARKSEVKTRMRKVFEALDALKKK 120
           +FQRR  SVVCE A  K ADSAAKR RQAETRRLRNKARKSEVKTRMRKVFEALD LKKK
Sbjct: 61  TFQRRTSSVVCEAAPQKTADSAAKRARQAETRRLRNKARKSEVKTRMRKVFEALDVLKKK 120

Query: 121 SGASTEELVPIDNLIAEAYSAIDKAVVKGTLHRNTAARRKSRLARNKKVVEIHHGWYTPS 180
           +G + EELVPIDNL+AEAYSAIDKAVVKG+LHRNTAARRKSRLARNKKVVEIHHGWYTP+
Sbjct: 121 TGPAPEELVPIDNLLAEAYSAIDKAVVKGSLHRNTAARRKSRLARNKKVVEIHHGWYTPA 180

Query: 181 LAPTNV 184
            APT V
Sbjct: 181 SAPTTV 186
[Close]
BLAST of Spo14906.1 vs. UniProtKB/TrEMBL
Match: W9S1K3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_009619 PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 2.700e-48
Identity = 115/182 (63.19%), Postives = 135/182 (74.18%), Query Frame = 1 

		  

Query: 3   AISMACVSSQCLSISSKLHNLSFSSTQFPNSSLKPLTFSANLSQPLFSQGCSSLGSFQR- 62
           A ++ C+SS CL++ SKL +LS S +   +S    L+FSA LS   FS+GC S+ + QR 
Sbjct: 2   AATIQCLSSSCLALPSKLRSLSISGSSHSSS----LSFSATLSHDFFSKGCLSMNAVQRT 61

Query: 63  --RGFSVVCEVATLKKADSAAKRTRQAETRRLRNKARKSEVKTRMRKVFEALDALKKKSG 122
             R  +VVCE A  KKADSAAKR RQAE RR+ NKARKSEVKTRM+KV EALD LKKK  
Sbjct: 62  MRRSAAVVCEAAPTKKADSAAKRARQAEKRRIYNKARKSEVKTRMKKVLEALDTLKKKQD 121

Query: 123 ASTEELVPIDNLIAEAYSAIDKAVVKGTLHRNTAARRKSRLARNKKVVEIHHGWYTPSLA 182
           A  EE++P++ LIAEAYS IDKAV  GTLHRNT ARRKSRLAR KK VEIHHGWYTP+ A
Sbjct: 122 AQAEEVLPVEKLIAEAYSIIDKAVKVGTLHRNTGARRKSRLARRKKAVEIHHGWYTPTPA 179
[Close]
BLAST of Spo14906.1 vs. UniProtKB/TrEMBL
Match: B9N1D8_POPTR (Chloroplast 30S ribosomal protein S20 OS=Populus trichocarpa GN=POPTR_0001s40700g PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 7.300e-46
Identity = 108/171 (63.16%), Postives = 128/171 (74.85%), Query Frame = 1 

		  

Query: 11  SQCLSISSKLHNLSFSSTQFPNSSLKPLTFSANLSQPLFSQGCSSLGSFQR--RGFSVVC 70
           S CL +  KL NLS +ST    S+   L+FS++LS  +F++GC S+ + QR    FS+VC
Sbjct: 7   SPCLGLPPKLKNLSLNSTTCSTSTFSSLSFSSSLSHSIFNKGCLSMRTTQRSIHNFSIVC 66

Query: 71  EVATLKKADSAAKRTRQAETRRLRNKARKSEVKTRMRKVFEALDALKKKSGASTEELVPI 130
           E    KKADSA KRTRQAE RR+ NKARKSEVKTRM+KV EALD LKKK  A  EE++PI
Sbjct: 67  ESTPKKKADSAEKRTRQAEKRRVYNKARKSEVKTRMKKVLEALDDLKKKPEAQFEEVLPI 126

Query: 131 DNLIAEAYSAIDKAVVKGTLHRNTAARRKSRLARNKKVVEIHHGWYTPSLA 180
           + LIAEAYS IDKA+  GTLHRNT ARRKSRLAR KK VEIHHGWY+P+ A
Sbjct: 127 EKLIAEAYSVIDKAIKVGTLHRNTGARRKSRLARRKKAVEIHHGWYSPAPA 177
[Close]
BLAST of Spo14906.1 vs. UniProtKB/TrEMBL
Match: A0A0A0KZK9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G630000 PE=3 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 2.800e-45
Identity = 111/178 (62.36%), Postives = 132/178 (74.16%), Query Frame = 1 

		  

Query: 6   MACVSSQCLSISSKLHNLSFS--STQFP----NSSLKPLTFSANLSQPLFSQGCSSLGSF 65
           MA  +  C S+SSK  NLS +  S+  P    +S+L+ L+FS+N+S   FS GC S+   
Sbjct: 1   MAAAAITCFSLSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60

Query: 66  QR-RGFSVVCEVATLKKADSAAKRTRQAETRRLRNKARKSEVKTRMRKVFEALDALKKKS 125
           +R   +SVVCE A   K DSAAKR RQAE RR+ NKARKSE+KTRM+KV EALD LKKK+
Sbjct: 61  ERLHRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120

Query: 126 GASTEELVPIDNLIAEAYSAIDKAVVKGTLHRNTAARRKSRLARNKKVVEIHHGWYTP 177
            A +EE++PI+ LIAEAYS IDKAV  GTLHRNTAARRKSRLAR KK VEIHHGWYTP
Sbjct: 121 EAQSEEVLPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTP 178
[Close]
BLAST of Spo14906.1 vs. UniProtKB/TrEMBL
Match: A0A067E2G1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029900mg PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 5.200e-44
Identity = 110/176 (62.50%), Postives = 126/176 (71.59%), Query Frame = 1 

		  

Query: 10  SSQCLSISSKLHNLSFSSTQFPNSSL---KPLTFSANLSQPLFSQGCSSLGSFQR-RGFS 69
           SS CL+I SK   LS ++    +SS    K L FS  LS  +FS G  ++   QR    S
Sbjct: 8   SSSCLTIQSKFKTLSLNNNSSSHSSFATFKSLCFSNKLSHNVFSTGSLTMSPIQRPMRHS 67

Query: 70  VVCEVATLKKADSAAKRTRQAETRRLRNKARKSEVKTRMRKVFEALDALKKKSGASTEEL 129
           VVCE AT KKADSAAKR RQAE RR+ NK+RKSEVKTRM+KV EALD L+KK  A  EE+
Sbjct: 68  VVCEAATKKKADSAAKRARQAEKRRIYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEV 127

Query: 130 VPIDNLIAEAYSAIDKAVVKGTLHRNTAARRKSRLARNKKVVEIHHGWYTPSLAPT 182
           +P++ LIAEAYS IDKAV  GTLHRNT ARRKSRLAR KK VEIHHGWYTP+ A T
Sbjct: 128 LPVEKLIAEAYSVIDKAVKVGTLHRNTGARRKSRLARRKKAVEIHHGWYTPTPAET 183
[Close]
BLAST of Spo14906.1 vs. ExPASy Swiss-Prot
Match: RR20_ARATH (30S ribosomal protein S20, chloroplastic OS=Arabidopsis thaliana GN=RPS20 PE=2 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.600e-33
Identity = 96/184 (52.17%), Postives = 115/184 (62.50%), Query Frame = 1 

		  

Query: 5   SMACVSSQCLSISSKLHNLSFSSTQFPNSSLKPLTFSANLSQPLFSQGCSSLGSFQRRGF 64
           S A + SQ   +S K  + S  S+ F N      T S++LS   FSQ  S   +F     
Sbjct: 10  SCATLESQFKVLSLKGISCSSPSSSFSNRRGASATLSSSLS---FSQSVSQCVAFSTGNL 69

Query: 65  SV--------VCEVAT-LKKADSAAKRTRQAETRRLRNKARKSEVKTRMRKVFEALDALK 124
            V        VCE A   KKADSAAKR RQAE RR+ NK++KSE +TRM+KV EAL+ LK
Sbjct: 70  WVQKPMRQLIVCEAAAPTKKADSAAKRARQAEKRRVYNKSKKSEARTRMKKVLEALEGLK 129

Query: 125 KKSGASTEELVPIDNLIAEAYSAIDKAVVKGTLHRNTAARRKSRLARNKKVVEIHHGWYT 180
           KK+ A  +E+V ++ LI EAYSAIDKAV    LH+NT ARRKSRLAR KK VEIHHGWY 
Sbjct: 130 KKTDAQADEIVTVEKLIGEAYSAIDKAVKVKALHKNTGARRKSRLARRKKAVEIHHGWYV 189
[Close]
BLAST of Spo14906.1 vs. ExPASy Swiss-Prot
Match: RS20_CYAP8 (30S ribosomal protein S20 OS=Cyanothece sp. (strain PCC 8801) GN=rpsT PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.600e-9
Identity = 42/95 (44.21%), Postives = 58/95 (61.05%), Query Frame = 1 

		  

Query: 73  LKKADSAAKRTRQAETRRLRNKARKSEVKTRMRKVFEALDALKKKSGASTEELVPIDNLI 132
           +  + SA KR   AE  RL NKA KS V+T M+K FEA+ A    +  + + L  ++  +
Sbjct: 1   MANSKSALKRIAVAERNRLHNKAYKSAVRTLMKKYFEAVQAYG--NNPTPDNLSVVEQCM 60

Query: 133 AEAYSAIDKAVVKGTLHRNTAARRKSRLARNKKVV 168
           + AYS IDKAV +  LHRN  AR+K+RLA+  K V
Sbjct: 61  SAAYSKIDKAVKRHVLHRNNGARKKARLAKALKQV 93
[Close]
BLAST of Spo14906.1 vs. ExPASy Swiss-Prot
Match: RS20_SYNE7 (30S ribosomal protein S20 OS=Synechococcus elongatus (strain PCC 7942) GN=rpsT PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 6.000e-9
Identity = 41/85 (48.24%), Postives = 53/85 (62.35%), Query Frame = 1 

		  

Query: 78  SAAKRTRQAETRRLRNKARKSEVKTRMRKVFEALDALKKKSGASTEELVPIDNLIAEAYS 137
           SA KR + AE  RLRNKA KS VKT ++  F A DA       +  + V  +  ++ AYS
Sbjct: 6   SAIKRVQIAERNRLRNKAYKSAVKTLVKHCFTAFDAYAADPNETARQAV--NERLSAAYS 65

Query: 138 AIDKAVVKGTLHRNTAARRKSRLAR 163
            IDKAV +G LH NT AR+K+RLA+
Sbjct: 66  KIDKAVKRGVLHANTGARKKARLAK 88
[Close]
BLAST of Spo14906.1 vs. ExPASy Swiss-Prot
Match: RS20_SYNP6 (30S ribosomal protein S20 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpsT PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 6.000e-9
Identity = 41/85 (48.24%), Postives = 53/85 (62.35%), Query Frame = 1 

		  

Query: 78  SAAKRTRQAETRRLRNKARKSEVKTRMRKVFEALDALKKKSGASTEELVPIDNLIAEAYS 137
           SA KR + AE  RLRNKA KS VKT ++  F A DA       +  + V  +  ++ AYS
Sbjct: 6   SAIKRVQIAERNRLRNKAYKSAVKTLVKHCFTAFDAYAADPNETARQAV--NERLSAAYS 65

Query: 138 AIDKAVVKGTLHRNTAARRKSRLAR 163
            IDKAV +G LH NT AR+K+RLA+
Sbjct: 66  KIDKAVKRGVLHANTGARKKARLAK 88
[Close]
BLAST of Spo14906.1 vs. ExPASy Swiss-Prot
Match: RS20_CYAA5 (30S ribosomal protein S20 OS=Cyanothece sp. (strain ATCC 51142) GN=rpsT PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.300e-8
Identity = 38/90 (42.22%), Postives = 57/90 (63.33%), Query Frame = 1 

		  

Query: 73  LKKADSAAKRTRQAETRRLRNKARKSEVKTRMRKVFEALDALKKKSGASTEELVPIDNLI 132
           +  + SA KR R +E  RLRNK+ KS V+T M+K  +A++  +  +  + E    +D  +
Sbjct: 1   MANSKSALKRIRTSERNRLRNKSYKSAVRTLMKKYLQAVE--EYAASPTPENKAVVDQRM 60

Query: 133 AEAYSAIDKAVVKGTLHRNTAARRKSRLAR 163
           + AYS IDKAV +  LHRN  AR+K+RLA+
Sbjct: 61  SAAYSKIDKAVKRSVLHRNNGARKKARLAK 88
[Close]
BLAST of Spo14906.1 vs. TAIR (Arabidopsis)
Match: AT3G15190.1 (chloroplast 30S ribosomal protein S20, putative)

HSP 1 Score: 144.1 bits (362), Expect = 8.800e-35
Identity = 96/184 (52.17%), Postives = 115/184 (62.50%), Query Frame = 1 

		  

Query: 5   SMACVSSQCLSISSKLHNLSFSSTQFPNSSLKPLTFSANLSQPLFSQGCSSLGSFQRRGF 64
           S A + SQ   +S K  + S  S+ F N      T S++LS   FSQ  S   +F     
Sbjct: 10  SCATLESQFKVLSLKGISCSSPSSSFSNRRGASATLSSSLS---FSQSVSQCVAFSTGNL 69

Query: 65  SV--------VCEVAT-LKKADSAAKRTRQAETRRLRNKARKSEVKTRMRKVFEALDALK 124
            V        VCE A   KKADSAAKR RQAE RR+ NK++KSE +TRM+KV EAL+ LK
Sbjct: 70  WVQKPMRQLIVCEAAAPTKKADSAAKRARQAEKRRVYNKSKKSEARTRMKKVLEALEGLK 129

Query: 125 KKSGASTEELVPIDNLIAEAYSAIDKAVVKGTLHRNTAARRKSRLARNKKVVEIHHGWYT 180
           KK+ A  +E+V ++ LI EAYSAIDKAV    LH+NT ARRKSRLAR KK VEIHHGWY 
Sbjct: 130 KKTDAQADEIVTVEKLIGEAYSAIDKAVKVKALHKNTGARRKSRLARRKKAVEIHHGWYV 189
The following BLAST results are available for this feature:
BLAST of Spo14906.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|731329227|ref|XP_010675477.1|1.9e-7182.2PREDICTED: 30S ribosomal prote... [more]
gi|703136586|ref|XP_010106195.1|3.8e-4863.1hypothetical protein L484_0096... [more]
gi|743901055|ref|XP_011043839.1|2.7e-4663.7PREDICTED: 30S ribosomal prote... [more]
gi|566153920|ref|XP_006370215.1|1.0e-4563.1chloroplast 30S ribosomal prot... [more]
gi|449456625|ref|XP_004146049.1|4.0e-4562.3PREDICTED: 30S ribosomal prote... [more]
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BLAST of Spo14906.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0J8CM80_BETVU1.3e-7182.2Uncharacterized protein OS=Bet... [more]
W9S1K3_9ROSA2.7e-4863.1Uncharacterized protein OS=Mor... [more]
B9N1D8_POPTR7.3e-4663.1Chloroplast 30S ribosomal prot... [more]
A0A0A0KZK9_CUCSA2.8e-4562.3Uncharacterized protein OS=Cuc... [more]
A0A067E2G1_CITSI5.2e-4462.5Uncharacterized protein OS=Cit... [more]
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BLAST of Spo14906.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RR20_ARATH1.6e-3352.130S ribosomal protein S20, chl... [more]
RS20_CYAP84.6e-944.230S ribosomal protein S20 OS=C... [more]
RS20_SYNE76.0e-948.230S ribosomal protein S20 OS=S... [more]
RS20_SYNP66.0e-948.230S ribosomal protein S20 OS=S... [more]
RS20_CYAA51.3e-842.230S ribosomal protein S20 OS=C... [more]
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BLAST of Spo14906.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT3G15190.18.8e-3552.1chloroplast 30S ribosomal prot... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002583Ribosomal protein S20PRODOMPD004231coord: 87..162
score: 3.
IPR002583Ribosomal protein S20GENE3D1.20.58.110coord: 76..177
score: 7.5
IPR002583Ribosomal protein S20HAMAPMF_00500Ribosomal_S20coord: 70..166
score: 16
IPR002583Ribosomal protein S20PFAMPF01649Ribosomal_S20pcoord: 77..162
score: 3.7
IPR002583Ribosomal protein S20TIGRFAMsTIGR00029TIGR00029coord: 74..162
score: 5.5
IPR002583Ribosomal protein S20unknownSSF46992Ribosomal protein S20coord: 77..179
score: 1.57
NoneNo IPR availablePANTHERPTHR33398FAMILY NOT NAMEDcoord: 6..183
score: 6.0
NoneNo IPR availablePANTHERPTHR33398:SF230S RIBOSOMAL PROTEIN S20, CHLOROPLASTICcoord: 6..183
score: 6.0

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006725 cellular aromatic compound metabolic process
biological_process GO:0034660 ncRNA metabolic process
biological_process GO:0044260 cellular macromolecule metabolic process
biological_process GO:0009902 chloroplast relocation
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0000023 maltose metabolic process
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0060003 copper ion export
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:1901576 organic substance biosynthetic process
biological_process GO:1901360 organic cyclic compound metabolic process
biological_process GO:0046483 heterocycle metabolic process
biological_process GO:0034641 cellular nitrogen compound metabolic process
biological_process GO:0008152 metabolic process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005622 intracellular
cellular_component GO:0000311 plastid large ribosomal subunit
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009507 chloroplast
cellular_component GO:0005840 ribosome
cellular_component GO:0044434 chloroplast part
molecular_function GO:0005524 ATP binding
molecular_function GO:0004008 copper-exporting ATPase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0019843 rRNA binding
RNA-Seq Expression