Spo14952 (gene)

Overview
NameSpo14952
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionTransducin/WD40 repeat-like superfamily protein
LocationSpoScf_02283 : 32797 .. 37324 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCTGCGAATTAGGTGTTTATCACAACTTAGCTCTCGATCTACGCGCTGCGATAAAACTCTCCAGATCTGAAATGTAAACCTTTCATCCTTTTCTTTCTCGAACTCTCCGCTCAGTTTCACATTTTCTCCCTCAAACCCTAGAATTATTTCATCGATCTCTCTCTCTCCTTTAGATCAATTCTTTCTCCCCATAAGTGTAAGTTTCCCGCTGATTTCATCGGAGATTTGGCAAGTTCCGACGCCAAATGCTGCTTTCTCGACATTTCCCCCGAAGGATGAGGGAATTTGGGGCCGACAATTGACTCTTTATTCCCGAAGATTGTAGAAACTCCTCCATATCTACCGGACTTCGAAGGAACACCGGCGTTATTACCAAAGATGAACAGATGCAGAGAAAATCAATCTGGTAGTTTGCTAAATTTCATCCACCACACATTTTTACTTCTCATTCTCCGACGGTGGCATTGGTGGCCTGCTCATCGGCTTATTCCAGAAGGTTGAAGGTATTCTCGATTTTAAATAAATTTCATTGGATTGGTCTATGATTTTGCCCAAAATTTAAATTTTAGGGTTCTTAATTGTAATTTGGAATTTTAATTAAAACATTTGATATTATTTGGAAGTATTTAATGGGCTTAATATTTGATATTATTTGAAGGTTCAAAGCAGAATTTAAACCTACGAGTAGATCAACAAAGATGACGGAAGCGGTTTGTTCTTCTTCTCTATTATCTGATTTTCGCAGTAATTATTGTTCCTTTTGTGGTTTATTGGTTTTCTCCCAGTCTTATTGGTTTGTTGGTCATTTTTCTAGTGATAGTTACGCCAAGTCGAAGTTACAACCCTAAAAATTAAGATTTATGTGTATAACTATCTGACATCAATCACTTAATTGGTTCTGAACTTGCTTGTCGATTCTAGCTAGATCTTGTGCAGGCGTAAGCAGTTTCAGAATGTTAAATTTGTAACTGGATTTACACCACACCTAAGTTTGTGTTTATTACTGAATTTGTCACATTTTCCTTTATTACTATGTAATCAGGTTTCTCAACCATTACATGTATTTATTTGGGCTTTGATGCAGATCCATCACTAAACATTGTTGCTAGGATACGTGGTCCAACTGTGAGTCAATTTTACATCTTACGTTTGCATGTTGATACTCCACCACACGATCTTCATGCACCAGATTGCTTAAATGATCTACACCCTGGAGATCACATTGAGATCCAATGGAGACGGGATAAAGAATTCCCTTATGGTACGTTCCACAATCTATGAATTGGATGTCATTATGGTGAATATTTGTCAAATTTGTGTTGCTCGGATACTAAGTTAGAGGTTGGTTTGACTTGATTATTGTTTTAGATCTTTCTCTTGGTTGGTTATAATTAGGTTTGCAATTCTTGAATAAAAAGTATGGCAATTTGTTTTCTTAGAGGTTGGTTCTAGAATTATTGTTGATGTCATAGCAGTGGTGAGTAAATGAATGCCTCTAGTCACTGAATATTTATTTAAACTCTTTAATAAGCATCTGCAAGGAACATAAACTAAAATTCCTGCATGGGATTTTTAGGGATCGTGTTAGAATATCAATACCACAGTTATACTTCACTTTTTTTTTACAGCAATGGTTCTTCCAAATTTAATTTCGCTTTCTTCCAAGGAAATCACCTCACACTTTCTACATTTGTACATCTCCACAACTATAATTTCTGCAGTTATGAAGATTCTAAGCTAATGGTATCATTTCTACTGTCAATATATGGGAAAGTTAAAATTTTAGCTTGTAATAGTCACTTGTTGCTATGTTTAGTGGAAGCTGAATATGTATGTTACAGCCTTTATGATCTAATTAAGACATTGTATTTGTTCTTCAGGTTTCACGAGTTGGAGGCTACACAGTTCCTCCTGATTTCATCCTGCTTACTCTACCAAGCTTTCTCATGGCAGTGGTGGAAGCTGAGTTAAAGTTGCCTGCAGATTCATATACCGCCAACCTTGTAATAAACGAGGGAGAGTCTGTGTATGACTATTGTTGGTACCCTTACATGTCTGCTTCAGGTATGTACTACATGCCTTTAACCTTCTTTTGTGTTCACATATATGTAATTGTTTAATTTTTTATTTTTTCTTTTACATGAAGTATACGAATGCAAATCAAAACTAGTTTCCTCCCTCGTTGATCATAATCATATTGATGTAGTGATTATGAACCAATATAATGTAACTATTTCTTTCAGAAATTAATTTGAGAAAAACATGGAGATTAGTGTGTTTTGGTTAAAGTTAGGAGAAAATTAGGTAGTTTATTGCATTCTTAGACTAACTTTCCATATTATATGACTTTTACTGAGAGGAAATTGTGGGGTTGCTCATATTTTAATTAGACAGGAGAGTACATGGGGCGGGGGGGTTGCACAGAGTTATTCTGGTCATTGTGCACAGTTTCTACTGTAAGCTATCGAGAAACTGTNGCACGGGGGTTTATTTTCAATTACCTTGCCTTCAATACTTAAGTATCAGAGCTTCATGTACGCTTCTAACACTGAGTAATTGCAATTCTGGTTATGTTCATTTTGTGAGTTCGTATGAGGCGATACCAAGATTACCATTGTTCAGTTTCTCTCTTTGTATGTGAATGGCCTTTTAGGGTATTACTTGTTCTTTAGGCCATGCTTAAAATTAAAAGGGTGAATAATGGGGTGATAGGTACAATTAGGGGATAGGATAAGGGGATGATGGATTGATACTTTATACTTTACTAATGAAAGAGCATTTTGAAACTAGCTAAGCTTTGAGTGAGTGAGCCCACACTCATAATTGACATGATAAGTGTTTTTTCTCAACTTTTTAAGGGGGGAAAGGGGATATGCGCGAAGTTTATCCATCACTGTGTATAAGCTGCTCACAGGGGAGCTCGTTCTTGCTTTAAGCTATTGATAGAAGTCCAGAATGCACAAGGATTCAAGGATTGTATTCCATTATATTGTCTTCTATATTTGCAACTAAAAGCTTCTTGATGGCTTTGTAATACTGAATAATAGGAAGTCTGGTTGTGTATGATATGTGTGTTGTTCATGTGAAGTGAGACTAAGATTGTGACTCTTTATCCTTCACTTGTGAGAGAATTCTGAAGCTAGCTAAGCTTTGGCAAGAAAATCGAGTATTTGTTATCTATTCATTTAGGGAGGGTGGGTGGGTTGGGATTGGGGGGGGGGGGGNGGAATTAAGCCAATCACATGGGAGCTGGTTCCTACTTTATGCTATTGGTAGAACTCTAGGATGACGAGGAGTGGAGGATTTTGCTCAATTTGATTGTCTTCTATATTTGCAGCTAAAAGCTTCTTGTTTTTCTAATGCTGAATAATAGGAAGTCTGAAGTCTACTTATGTATGATGTGTGTGTTCATGTGAGGTGATACAAAGGTTATGACTCTTTATCCTAGTGAAGGAGAATATTCTTTATCTATTTATTTAGGGAGGGTGGGTGGGTGGGTTGGGGAGGGAAGGGGGTCGGAGTTATTCTGATCACTGTGCATGGTTTCTACTTTAAGCTAACGAGAAAATGTGAGAACGTAAGAGGGTTTATTTTCAGTTACCTTGCCTTCAATATTTAAAATCAGAGCTTCCTGTAGGCTTCTAACACCGAGTAATTGCACTTCTAGTTAAGTGGTTATGTTTGTTTTGTGAAGTCATATGAGGTGATATAAAGATTGGCACCAGTCAGTTTCTCTCTCCATATAGAAATGACTCTTTAGGGGTTCTTTAGGCCATGTTTGGACTTGATGGATGGATTAGGGGGTCACAGGAATCAATTAATGGCTAACATAAGGGAATGGTGGATGGGTGGTCTGTGGTGGTGATTGTTTGAATATGGTGGAAGATTTTATTGGTTATCCCCGGTTTTAGGAGTATATTATTACTCCAGAATGAGAGATGGGAATCCCCCATGGCAGTCATCTATTGCCCTTTCTGACTATTTTACATTATAGTTTGCCTTCAATAGTAACTTCCACAATTGTTGGTGCCTCTTAAACGATTTCCATTAATTCAAGCATGGCCTTAGTTTATTTGTTTGTGGAGTTAGACACACAAATCTCAGCAGTCTGTGACCTACCAGCTCTACTATATTTACTTTTAGCTTGATGAAGCTCTTTAAGAAATATTATATTACTATACTAGGCCCTTTTTTATTCTTCACATGTTTGCAACGAATTCAAGTTATTTTTTGTGTTTAAAACGGACTTTTGCTGATTGTAATTGAATTAAAGTTCATTTTTCATGATTCTCTAGTGTTTTTTGTATGTGCAGTACAATTGATTAAAGCTGAATTTTAAGAATCAAAATACGTAGCAGTATTTACGGATTAAAACTGATATTCACTAGTCTGTGTAATTGGTGTCTTGTAGATGGACTGTTGTAAAGTGTATATTAATTATGTCAGTTTTTCACTTGTCCAGGCGGCACTTTTGCCTTGTACTCATTGCTATGCCGGCATGCAAACCTTGGGTGTTCTTCCTACTGA

mRNA sequence

AGCTGCGAATTAGGTGTTTATCACAACTTAGCTCTCGATCTACGCGCTGCGATAAAACTCTCCAGATCTGAAATGTAAACCTTTCATCCTTTTCTTTCTCGAACTCTCCGCTCAGTTTCACATTTTCTCCCTCAAACCCTAGAATTATTTCATCGATCTCTCTCTCTCCTTTAGATCAATTCTTTCTCCCCATAAGTGTAAGTTTCCCGCTGATTTCATCGGAGATTTGGCAAGTTCCGACGCCAAATGCTGCTTTCTCGACATTTCCCCCGAAGGATGAGGGAATTTGGGGCCGACAATTGACTCTTTATTCCCGAAGATTGTAGAAACTCCTCCATATCTACCGGACTTCGAAGGAACACCGGCGTTATTACCAAAGATGAACAGATGCAGAGAAAATCAATCTGGTAGTTTGCTAAATTTCATCCACCACACATTTTTACTTCTCATTCTCCGACGGTGGCATTGGTGGCCTGCTCATCGGCTTATTCCAGAAGGTTGAAGGTTCAAAGCAGAATTTAAACCTACGAGTAGATCAACAAAGATGACGGAAGCGATCCATCACTAAACATTGTTGCTAGGATACGTGGTCCAACTGTGAGTCAATTTTACATCTTACGTTTGCATGTTGATACTCCACCACACGATCTTCATGCACCAGATTGCTTAAATGATCTACACCCTGGAGATCACATTGAGATCCAATGGAGACGGGATAAAGAATTCCCTTATGGTTTCACGAGTTGGAGGCTACACAGTTCCTCCTGATTTCATCCTGCTTACTCTACCAAGCTTTCTCATGGCAGTGGTGGAAGCTGAGTTAAAGTTGCCTGCAGATTCATATACCGCCAACCTTGTAATAAACGAGGGAGAGTCTGTGTATGACTATTGTTGGTACCCTTACATGTCTGCTTCAGGCGGCACTTTTGCCTTGTACTCATTGCTATGCCGGCATGCAAACCTTGGGTGTTCTTCCTACTGA

Coding sequence (CDS)

ATGATCTACACCCTGGAGATCACATTGAGATCCAATGGAGACGGGATAAAGAATTCCCTTATGGTTTCACGAGTTGGAGGCTACACAGTTCCTCCTGATTTCATCCTGCTTACTCTACCAAGCTTTCTCATGGCAGTGGTGGAAGCTGAGTTAAAGTTGCCTGCAGATTCATATACCGCCAACCTTGTAATAAACGAGGGAGAGTCTGTGTATGACTATTGTTGGTACCCTTACATGTCTGCTTCAGGCGGCACTTTTGCCTTGTACTCATTGCTATGCCGGCATGCAAACCTTGGGTGTTCTTCCTACTGA

Protein sequence

MIYTLEITLRSNGDGIKNSLMVSRVGGYTVPPDFILLTLPSFLMAVVEAELKLPADSYTANLVINEGESVYDYCWYPYMSASGGTFALYSLLCRHANLGCSSY
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo14952.1Spo14952.1mRNA


Homology
[Close]
BLAST of Spo14952.1 vs. NCBI nr
Match: gi|902177389|gb|KNA08955.1| (hypothetical protein SOVF_158060 [Spinacia oleracea])

HSP 1 Score: 122.9 bits (307), Expect = 3.400e-25
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 1 

		  

Query: 21 MVSRVGGYTVPPDFILLTLPSFLMAVVEAELKLPADSYTANLVINEGESVYDYCWYPYM 80
          MVSRVGGYTVPPDFILLTLPSFLMAVVEAELKLPADSYTANLVINEGESVYDYCWYPY+
Sbjct: 1  MVSRVGGYTVPPDFILLTLPSFLMAVVEAELKLPADSYTANLVINEGESVYDYCWYPYI 59
[Close]
BLAST of Spo14952.1 vs. NCBI nr
Match: gi|902193336|gb|KNA12280.1| (hypothetical protein SOVF_127390 [Spinacia oleracea])

HSP 1 Score: 65.5 bits (158), Expect = 6.300e-8
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 1 

		  

Query: 56  DSYTANLVINEGESVYDYCWYPYMSASGGTFALYSLLCR 95
           DSYTANLVINEGESVYDYCWYPYMSAS  T  +++   R
Sbjct: 114 DSYTANLVINEGESVYDYCWYPYMSASDTTSCVFATTTR 152
[Close]
BLAST of Spo14952.1 vs. NCBI nr
Match: gi|848898550|ref|XP_012849395.1| (PREDICTED: telomerase Cajal body protein 1-like isoform X1 [Erythranthe guttata])

HSP 1 Score: 61.6 bits (148), Expect = 9.200e-7
Identity = 25/30 (83.33%), Postives = 27/30 (90.00%), Query Frame = 1 

		  

Query: 53 LPADSYTANLVINEGESVYDYCWYPYMSAS 83
          LPADSY AN+ + EGESVYDYCWYPYMSAS
Sbjct: 8  LPADSYAANVAVREGESVYDYCWYPYMSAS 37
[Close]
BLAST of Spo14952.1 vs. NCBI nr
Match: gi|658056775|ref|XP_008364147.1| (PREDICTED: telomerase Cajal body protein 1-like isoform X3 [Malus domestica])

HSP 1 Score: 61.2 bits (147), Expect = 1.200e-6
Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 1 

		  

Query: 55  ADSYTANLVINEGESVYDYCWYPYMSASGGTFALYSLLCR 95
           ADSY ANLV+NEGESVYD+CWYPYMSAS     +++   R
Sbjct: 109 ADSYAANLVVNEGESVYDFCWYPYMSASDPVTCVFATTSR 148
[Close]
BLAST of Spo14952.1 vs. NCBI nr
Match: gi|658056771|ref|XP_008364145.1| (PREDICTED: telomerase Cajal body protein 1-like isoform X1 [Malus domestica])

HSP 1 Score: 61.2 bits (147), Expect = 1.200e-6
Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 1 

		  

Query: 55  ADSYTANLVINEGESVYDYCWYPYMSASGGTFALYSLLCR 95
           ADSY ANLV+NEGESVYD+CWYPYMSAS     +++   R
Sbjct: 109 ADSYAANLVVNEGESVYDFCWYPYMSASDPVTCVFATTSR 148
[Close]
BLAST of Spo14952.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QNY6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_158060 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.300e-25
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 1 

		  

Query: 21 MVSRVGGYTVPPDFILLTLPSFLMAVVEAELKLPADSYTANLVINEGESVYDYCWYPYM 80
          MVSRVGGYTVPPDFILLTLPSFLMAVVEAELKLPADSYTANLVINEGESVYDYCWYPY+
Sbjct: 1  MVSRVGGYTVPPDFILLTLPSFLMAVVEAELKLPADSYTANLVINEGESVYDYCWYPYI 59
[Close]
BLAST of Spo14952.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QYF1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_127390 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.400e-8
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 1 

		  

Query: 56  DSYTANLVINEGESVYDYCWYPYMSASGGTFALYSLLCR 95
           DSYTANLVINEGESVYDYCWYPYMSAS  T  +++   R
Sbjct: 114 DSYTANLVINEGESVYDYCWYPYMSASDTTSCVFATTTR 152
[Close]
BLAST of Spo14952.1 vs. UniProtKB/TrEMBL
Match: A0A068TUD4_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00029280001 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.900e-6
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = 1 

		  

Query: 55  ADSYTANLVINEGESVYDYCWYPYMSAS 83
           ADSY ANLVI EGESVYDYCWYPYMSAS
Sbjct: 120 ADSYPANLVIGEGESVYDYCWYPYMSAS 147
[Close]
BLAST of Spo14952.1 vs. UniProtKB/TrEMBL
Match: W1P715_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00003p00268830 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.200e-6
Identity = 23/41 (56.10%), Postives = 32/41 (78.05%), Query Frame = 1 

		  

Query: 54  PADSYTANLVINEGESVYDYCWYPYMSASGGTFALYSLLCR 95
           P+DSY A ++++EGESVYDYCWYPYMS+S  T  +++   R
Sbjct: 104 PSDSYDAKVIVHEGESVYDYCWYPYMSSSDPTTCVFATTTR 144
[Close]
BLAST of Spo14952.1 vs. UniProtKB/TrEMBL
Match: M5WH60_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006422mg PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 9.200e-6
Identity = 24/39 (61.54%), Postives = 30/39 (76.92%), Query Frame = 1 

		  

Query: 56  DSYTANLVINEGESVYDYCWYPYMSASGGTFALYSLLCR 95
           DSY AN V+NEGESVYD+CWYPYMSAS    ++++   R
Sbjct: 103 DSYAANSVVNEGESVYDFCWYPYMSASDPVTSVFATTSR 141
[Close]
BLAST of Spo14952.1 vs. TAIR (Arabidopsis)
Match: AT4G21520.1 (Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 53.9 bits (128), Expect = 6.700e-8
Identity = 21/27 (77.78%), Postives = 25/27 (92.59%), Query Frame = 1 

		  

Query: 56  DSYTANLVINEGESVYDYCWYPYMSAS 83
           DSY A+L++NEGESVYD+CWYPYMS S
Sbjct: 98  DSYGASLLVNEGESVYDFCWYPYMSVS 124
The following BLAST results are available for this feature:
BLAST of Spo14952.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902177389|gb|KNA08955.1|3.4e-2598.3hypothetical protein SOVF_1580... [more]
gi|902193336|gb|KNA12280.1|6.3e-874.3hypothetical protein SOVF_1273... [more]
gi|848898550|ref|XP_012849395.1|9.2e-783.3PREDICTED: telomerase Cajal bo... [more]
gi|658056775|ref|XP_008364147.1|1.2e-665.0PREDICTED: telomerase Cajal bo... [more]
gi|658056771|ref|XP_008364145.1|1.2e-665.0PREDICTED: telomerase Cajal bo... [more]
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BLAST of Spo14952.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QNY6_SPIOL2.3e-2598.3Uncharacterized protein OS=Spi... [more]
A0A0K9QYF1_SPIOL4.4e-874.3Uncharacterized protein OS=Spi... [more]
A0A068TUD4_COFCA1.9e-692.8Uncharacterized protein OS=Cof... [more]
W1P715_AMBTC3.2e-656.1Uncharacterized protein OS=Amb... [more]
M5WH60_PRUPE9.2e-661.5Uncharacterized protein OS=Pru... [more]
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BLAST of Spo14952.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo14952.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT4G21520.16.7e-877.7Transducin/WD40 repeat-like su... [more]
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009117 nucleotide metabolic process
biological_process GO:0005982 starch metabolic process
biological_process GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway
biological_process GO:0010200 response to chitin
biological_process GO:0002679 respiratory burst involved in defense response
biological_process GO:0010337 regulation of salicylic acid metabolic process
biological_process GO:0010363 regulation of plant-type hypersensitive response
biological_process GO:0010310 regulation of hydrogen peroxide metabolic process
biological_process GO:0006612 protein targeting to membrane
biological_process GO:0043069 negative regulation of programmed cell death
biological_process GO:0031348 negative regulation of defense response
biological_process GO:0000165 MAPK cascade
biological_process GO:0009867 jasmonic acid mediated signaling pathway
biological_process GO:0050832 defense response to fungus
biological_process GO:0042742 defense response to bacterium
biological_process GO:0052542 defense response by callose deposition
biological_process GO:0005985 sucrose metabolic process
cellular_component GO:0016020 membrane
molecular_function GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity
molecular_function GO:0005215 transporter activity
RNA-Seq Expression