Spo15080 (gene) | SpinachBase

Overview


Name	Spo15080
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Serine/arginine rich splicing factor, putative
Location	chr4 : 5411689 .. 5418580 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCCTTGGACCACTAACATCGTCTAACATACTTCCATGTAGTTTTAGAGTCCAACATTGAGTTTAACGACCTAAAACTCAGATTACACATTTTATGTACTTATCTTATCTCACATCCCCTCTTAAGAAAAGAGAAACAAATCAAATAAGTTTCCCTAAATACGACATGACTACCTTCACTTTACTTACAGCAGTTCACTGTACTTATACAGTAACTCATCTAGTGGAAAGGTGGTAGTTCTAAATATGTTTGTATTGGTGTTTTCCCCTAAAGTATCACAACTTTGACGGAAATAGACTTGAGCTAATAAAATGCCCGATCTATCTTCCCCTAAAAACAAAAAAAACTTACCGCAATTCACCTTATCTAATCAACACTTATTTCAAGCATTCAACATCATCGCCTATGTGTGTCCCTTGCCGTTACATCTCCACCCCCCCCTCCTCCACCACCACCATCGTGGAAATTATTTTGAATAATGAACAAGTCAAGAAAAACTAGTTTACATATAAAATTTGATAGCATTCTTGTGACTTGGAAGTCACAAGTTTGAGTCTCACCATCTGCTTGTGCTTGAAAGTTGAGTTCCCTTACCATCTCTATACTCTCGAGCGTTTCTTTTCCATTACCATTTATCCATTAAAATATTAATTAAAAGTACTAAGTACTAATTTCCTCTTTATTCCAACTCACTAAAACAACACCTAAAAAGGATGGAGGACAAATAACACAAGCATTGGCAATGAAAACAAGAAGACACCAAGGATTGAAAAACCTTTGACAGTAGTAATTGCAATTGGGCCAAAGCCCAAAGGCCCAAATAAAAGTATGGTTAAAAAGTGAAATGTGCATAAAACGACACACGACGACGACGCTCCCTCGTCCCCCCCCCCCCAAATAGAGTTGAGCCTTGTCGGCCTTCCTTCACTGTTGAGCATTCACCAGAGTTCCTCACACTTTCTCTCTCCTCTCCTTCTCTCAATCCAAATTCCTTCCGCAGGTATTCCCCCACTTTTTCTTTTCTCGATTTCATTTTGTTCAAATTTGCTTTTATTGTTTCAATCCATGTTTATTGTTGGTTAATTCCCCATCCCCGATAAAATCGTGAAGATTAGGAAACTAGGGATTCAAATTTTACTAATTAGTTGACAAATTTTGAAAAATTTAGCTTTTTTTTTCTTCCTGTAAATTGGATACTGCAAACTACTAGAATTTCATGATAATGTTTGCTCATTTATCGAATTTACTGCATTATGTCCCATTTAGCAGGTTAGGGTTTTCTATTTGGGTTGGATTTTTATAATTTGAGAATTTCTTTTCCTTAACTATTTCATTTTCGTTTCATTTAATGCTTTTGAATTTCGCTGTTATACTTATTATGAGCTTTACTGTGCAAACATATTGCTGTGTGGTAGTGAATCGAGTGGTATTGTATGAATAAAGAGTAACGAGTAGTCTAAGTGCTTCCGTTTTTGTGTTACAGAATATCGATTGAACCCCAGAATTTGTTTAACTATTTCATTTTTGTTTCAATTAAATGTTCTCGATTTCGCTCTTATACTTATTATGAGCTTCATTGTGCAAAAAAATTGTTTTGTGGTAGTGAATCTATTGGTATTGTATGAATAACGAGTAACCAGTAGTCTAAGAGCTTTCGGTTTTGTATTACAGAATATCGATTGAACTCGGAATTTGTTAAACTATTTCATTTTTGTCTTAATCTTTTCGAATTTCGCTGTTATACTTGTTATGAGCTTAATTCTGCAAACATCTTGTTGTGTGGTAGTGATTCTAGTGGTATTGTATGAATAACGAGTAGCCTAAGAGCTTTCGGGTTTTGTATTACAGAATATCGAGTGAATAGTATATACTCTGTGATAATGAGGGGAAGAAGCTACAGCCCTTCACCGCCGCCTAGAGGTGGCTACAGCAGAAGAGGACGCAGCCCAAGCCCCAGGGGACGCTACACTGGCCGTGGAAGGGATCCTTCCACTAGTTTGCTTGTTCGAAATCTCCGTCATGATTGCAGGTTTGTTCTCGTTAGCCATGAAAATGGTTGTTACTGGATTACATTTTCCATTGTTAGTTTTATGGACTGGTCTGCTTTTGTAGAATTCACTTCATAATTTGATTCACCTTTTGTTTAATGGAAATGTCTGTTTCTTTTTAGTGATTTAATTTATTATATCGTCAATCTTTAGTGTGGTTAAATGGTAAGTGGCGAGTGAAATCATTCTTCAGTTCTTCTTTGCTGTTTCTATGGAATATCAAAGGAGGTTGCTTGTTGTTGAAAGTTGTTCTGATGTCTTTGATTCTTGTAGTTGCTCACTTCCGTCTAATTTCTTTTGTATTTTGCAGACCAGAAGATCTCCGCAGGCCATTTGGTCAGTTTGGTCCTCTCAAGGACATTTACTTGCCTAGGGATTATTACACTGGGTAAGTACAGGATACTCATTTGATATTATGGACCCTATGAGGTTTCTCATGCCGCTCGACGAATGCCTCCATTTTAGTATTTCCATTTAGAATGTTCTTGATTAATATAAAGAACAATTCCTCTTGAGGACAAATTGTCTATCAAAGATTGGAAGCTTAAGGTGCTTAACCCAACAAATTATGACTTTAGCTAGATAGCAGCTTAACATAAGATTTCTGTGAATATAAATCATCTGTGAAGTGGCTTTTGTACATACCAAGGTAGACAATCATGAATAACATGGTTATGGCCTTTGTTTATTTTATTTTAGAAAAAAAATCTTTTGACCTTTGTATTTTCTGATACAGAAGTATATTGCATTTTTCTCTCCATAGGAAGTTCGATTTTCAAAAGCTCATCGTGTGACAAAGTTTAACTTAAACCCAATTGCAATATTTTCCCTCTGAGCATGGGTTTTTCTCCATGATGTATTTGATGTCACTATTACAACTTCAGTATCAGTTAATTATAGTTTTTGAGATTGAACAGTGAAATTAATGGTTCTTAGAGATCAATCAAGTAATAAGAGTCCTGTGGAAGATGTTGTTAATGGTATTGAAGATTGGAAGGAAGTTGGATTTGAATACATTTTGAAGAGTTCAAGTCTTGAAGAATTTCAAGTCACTCTTAAAACTGATGTTTCCAAGGTCAGCAGCCACGTGCTTGCGTTTTAAGTCCTTACCACAATCGTCCATATTGGTGGACCCTTTTTCAGATTGCAATATAATCACGAGTATAATCATCACTCTCTATTCTCAGTTGTATTTTACAAGTTGATATGTGAATAATCTCCTTAACCCTTTGCAGAGCACCTCGGGGATTTGGTTTCGTGCAATATGTGGACCCTGCAGATGCTGCTGATGCAAAACATCGTATGGATGGCCAGGTTTTTCAAGGTCGTGAATTGACAGTTGTGTTTGCTGAGGAGAATAGGAAGAAGCCAACTGAGATGAGAGTAAGGGAACGGACAAGGTAGACCATCATCTTTTCATGTCATTATTGGATCCTCGAGATACATTTTTTTTAATATTCTTTTTCAGATCATAAAATTATCATTTGAGTAATTTGATCATCAAATTATCATAAACACTAGTTGCTATTATTTATCTCAAGAAAACCATTTTATGGAGGGTGGGAGGGTGGAGGGGATGGGTTATAGTTATAGGGGTATGCTTGTTGAAAACACTGACAGAAAAATGGTAGTAAAACTAGATGGTAATGGAGTTATTGTTATAAGGGTCCGAGTATATGCAGTTACTGTAACTCAAAGCTTGATTCTCTGAGATCTGAGAAGAGACAAGGGAGTAGAAAAAGCAACGCAGAGAGGCGTGGTAGAAGAGGGATAAGAAATTAGTGGAGGGCAAAAAAATAAGGGCTTGAGTTGTTGAAAATGGTGGGGACACTAAGGGCTTTCTTACTGTCCTCGTGGTCTGCTCTATGCGCTGATTCCCATCTATCTGGGTTGTTCACGTTATTAGGCCGTGGACTTGTAGGACAATATCTTCACTAGGACTATTTTCTTTGGTTAAAATGATTTTGGGACACCCACCGTGAGAGCACAGTTTTATGTGCTCTCCTCACACGGAGCCACGGAGGTGTGCCAAAATCTATAAATGACTTGAATTTATGGGGTTTTGGTTCTTGGGGATCCAGTTTTACTTGCCCGGGAGCTTTTTCCTTTGGAGCGTAGTTGTCTGCCTCTTTTAAGGGCTTTGGGAAGGTTTTTTCAGCTTGTTTTGTGCCAAGCAGGACTAGGGCTTTAAAGGTACTCTTGTTTTTTATTTTTATTTTTATGTTGTCTCTCAAAGTTTTTTATTCATCCAGAAGAGATGATTGGCTGGTGGCTTTTCTTATTGTTTCTGAAAGCCCCACCTGTTTTCTTATCTTTACAAAAAATGGATAATATATTGAGCGTCTTTATCATACATTCCTAGCTACAGATCCAAAAGTGCGCAAATGAGATTTTGTACACTATCAGTGTAATGAAGTTTAACTTCCATTCAGTAACAGACTAACCGTATTTTGCCTTTCTTTCTTATTACATCTTCATTTCTACCAAACTACCTCCCCCTCTCCCTCTCCCTCTCCCCCCCCCCCCCCCCCCCCCCCACCCCCTCATTGTTTGTCTTAATATGGTCCCTCTCTGTCCCTTAATTTTCTTCACAAAATCCCCATGGGTGTCATAGATTTCACTTTTTTTTTTTGGGCGAAAAGGCAACTGTCTAAATCAATATTTTTTCACTATTCTCTCCATGACATCAACCTATTTTCTCTCTCCATCCAACACTCTTTACTTTCCCTCCTCACTTGTTAACACTTGCTTCATCCTTTACAGTAGTAGGGGTCGAAATGACAGAAGACGTTCTTCTGCTCGTTATTCCCGTTCACCGAGAGATTCTCGTTCTCCGCCTCCACGTCATGCCAGGTCCAGGTCCCGTAGCCGTGATGACTACTCACCTTCTCCCAAAAGAAGACAATACTCAAGGTATGTTATGTTGTGGTTTATAAACTTTTGTATTGGTTCTTCACTTCTTCTTACCTCCATCTGTTCTAATTTGTTTGTTAGTATTATCTTTTCACCTTCGATTTGTGGTTGTGAATAGTCTAGTTTAACTGTTACTCCCTCCGTCCCTTAATACTTGCACCGCTTTCCTTTTCGGGCCGTCCCTTAATACTTGCACCGCTTCTATAAATGGAAATTCATACCAATATTATATTATTTCTCACACTTACTTACTAACCCCACCTACACCCAAAATCAATTAAAAATTCACACCCCCACTCACCACTCTCCACCTCTTACACATTTCCCACTAACTATATTAAAAAATACCCCACTATCAACTAACACCCATTAAATTAATAAGTCAATTCAAATGTCTTAAACTCCGCACCGGTCAAACCGGTGCGAGTATTAAGGGACGGAGGGAGTAGTTGTGAAGCCTCAATCAATGTATAGGTTGGGTCATAATTATAACAAACCGCCTTACTGCTGCAATTGGTTGTATGGTGAAGTCATATGAGGATTGGGGACAAGGGTTTAAGTTAGGCTTAGTGGAGGTGGTGGTGTTTGAAGGAAACGGCATGGAGAACTAATACTCTCGTTTGGGGATAATCTAATACCCTAGGGAAGGAGGTAATTATTATTCGTATTTGAGGGGTTATTGTGTTTCACTCTTGAGAGTCTTGACCCACACATGCACAATCTACTTCACTCCTAATGCCCCCTTAATTGTTTACTCCCCAATCCAAACGTAACCTGAAATTTATACTTGGGCTAAGTAGAGTGTAATATAAATATAAAATTATGTGCATACCAAGGGATTAAATTAACATGAGCAGAAAAAATTTCCGGAGTTGAGTGTAGGATTAGAGTACTTTTATTTTTGTTTAGGGTACTTGTAGAAAGACCTCGTGTGCAGCAGGAACCGGGGTGATGCTTGTTTTAGGATTTGGAAAGTAAGATCTAAGTGTAGAGTGGATTCGTGTTGGACGGAAATTGTGAGCTTTCTGAGTAGCCATTATATGCTTGATTTATTTCCATGGGAATGCATTAAAGTGGGAATATTTTTTTGACAGGTCTGTTTCCCGTTCACCCAAAAATGGAAAGCCGAGTCGAGAGAGGTCCTATTCCCGTGAAAGCCGAGGTAGATCATATTCCCGTTCACCACAATCTCCAAAACATGCTCGAAGTCGTAGCAGGAGCAGAAGCAGAAGTCCAGTAGTGAGTCCTAGCCGAAACAAAAGCAGGAGCCCATATCCTGAAGACCATGTGCCCAAGGAGCTTCCGAACAGAGAGAGATCTCCCAGTCAGTAAGGTTCAGTTCTAGTTGGATGGGTACTTTCCCGTGTTTGCCAGTCTTATTGACAACTTCTGTTAAGGGGCACAACCTGAACTTAGAAATGATGCTGTAGTGCAGTAGTTGTAGACTTTTTAGTAGTAGTAGTTGCTTGCAACAATGTCTCCCTAAATTAAAATTTTACGACATTTCATTTCATTTCATTTCATCCCCTTGATAGGGATTTGCAGGTTTCTTATGCTCTGTTTATGGGGCTAAACATATTATGCTAGAAATTTGTGTTTGATGGTATTGTAAACTTGTTGTAATGGGTGAGGTTTGAAACCTGAGATTTGAAATTTGAAGTTGGATTCGGGAAATCTATCAGATGGTACAGAGTAATGTTTTAAATTAGGGTTAGAAATTATTGAAATTGCATTCACTTTTTGACTGCCTTGGAGAGTTGGAGGTGCTTTGTAATGCGCCCCAGCTAAGAGAGATGAAGAGGGTGGGTCCTAGCTTTCTTTGTTTTTCCACTTGGAAGACTGTTGACTAATTTAATTTGGACGACTAATTGTCTAATTTATCTTGTTTAACTTGATTCTTAATTCTTTTTTTTAAACTTAAATTTAAA

mRNA sequence

ATGGGCCTTGGACCACTAACATCGTCTAACATACTTCCATAGTTGAGCCTTGTCGGCCTTCCTTCACTGTTGAGCATTCACCAGAGTTCCTCACACTTTCTCTCTCCTCTCCTTCTCTCAATCCAAATTCCTTCCGCAGAATATCGAGTGAATAGTATATACTCTGTGATAATGAGGGGAAGAAGCTACAGCCCTTCACCGCCGCCTAGAGGTGGCTACAGCAGAAGAGGACGCAGCCCAAGCCCCAGGGGACGCTACACTGGCCGTGGAAGGGATCCTTCCACTAGTTTGCTTGTTCGAAATCTCCGTCATGATTGCAGACCAGAAGATCTCCGCAGGCCATTTGGTCAGTTTGGTCCTCTCAAGGACATTTACTTGCCTAGGGATTATTACACTGGAGCACCTCGGGGATTTGGTTTCGTGCAATATGTGGACCCTGCAGATGCTGCTGATGCAAAACATCGTATGGATGGCCAGGTTTTTCAAGGTCGTGAATTGACAGTTGTGTTTGCTGAGGAGAATAGGAAGAAGCCAACTGAGATGAGAGTAAGGGAACGGACAAGTAGTAGGGGTCGAAATGACAGAAGACGTTCTTCTGCTCGTTATTCCCGTTCACCGAGAGATTCTCGTTCTCCGCCTCCACGTCATGCCAGGTCCAGGTCCCGTAGCCGTGATGACTACTCACCTTCTCCCAAAAGAAGACAATACTCAAGGTATGTTATGTTGTGGTTTATAAACTTTTGTCTGTTTCCCGTTCACCCAAAAATGGAAAGCCGAGTCGAGAGAGGTCCTATTCCCGTGAAAGCCGAGGTAGATCATATTCCCGTTCACCACAATCTCCAAAACATGCTCGAAGTCGTAGCAGGAGCAGAAGCAGAAGTCCAGTAGTGAGTCCTAGCCGAAACAAAAGCAGGAGCCCATATCCTGAAGACCATGTGCCCAAGGAGCTTCCGAACAGAGAGAGATCTCCCAGTCAGTAAGGTTCAGTTCTAGTTGGATGGGTACTTTCCCGTGTTTGCCAGTCTTATTGACAACTTCTGTTAAGGGGCACAACCTGAACTTAGAAATGATGCTGTAGTGCAGTAGTTGTAGACTTTTTAGTAGTAGTAGTTGCTTGCAACAATGTCTCCCTAAATTAAAATTTTACGACATTTCATTTCATTTCATTTCATCCCCTTGATAGGGATTTGCAGGTTTCTTATGCTCTGTTTATGGGGCTAAACATATTATGCTAGAAATTTGTGTTTGATGGTATTGTAAACTTGTTGTAATGGGTGAGGTTTGAAACCTGAGATTTGAAATTTGAAGTTGGATTCGGGAAATCTATCAGATGGTACAGAGTAATGTTTTAAATTAGGGTTAGAAATTATTGAAATTGCATTCACTTTTTGACTGCCTTGGAGAGTTGGAGGTGCTTTGTAATGCGCCCCAGCTAAGAGAGATGAAGAGGGTGGGTCCTAGCTTTCTTTGTTTTTCCACTTGGAAGACTGTTGACTAATTTAATTTGGACGACTAATTGTCTAATTTATCTTGTTTAACTTGATTCTTAATTCTTTTTTTTAAACTTAAATTTAAA

Coding sequence (CDS)

ATGAGGGGAAGAAGCTACAGCCCTTCACCGCCGCCTAGAGGTGGCTACAGCAGAAGAGGACGCAGCCCAAGCCCCAGGGGACGCTACACTGGCCGTGGAAGGGATCCTTCCACTAGTTTGCTTGTTCGAAATCTCCGTCATGATTGCAGACCAGAAGATCTCCGCAGGCCATTTGGTCAGTTTGGTCCTCTCAAGGACATTTACTTGCCTAGGGATTATTACACTGGAGCACCTCGGGGATTTGGTTTCGTGCAATATGTGGACCCTGCAGATGCTGCTGATGCAAAACATCGTATGGATGGCCAGGTTTTTCAAGGTCGTGAATTGACAGTTGTGTTTGCTGAGGAGAATAGGAAGAAGCCAACTGAGATGAGAGTAAGGGAACGGACAAGTAGTAGGGGTCGAAATGACAGAAGACGTTCTTCTGCTCGTTATTCCCGTTCACCGAGAGATTCTCGTTCTCCGCCTCCACGTCATGCCAGGTCCAGGTCCCGTAGCCGTGATGACTACTCACCTTCTCCCAAAAGAAGACAATACTCAAGGTATGTTATGTTGTGGTTTATAAACTTTTGTCTGTTTCCCGTTCACCCAAAAATGGAAAGCCGAGTCGAGAGAGGTCCTATTCCCGTGAAAGCCGAGGTAGATCATATTCCCGTTCACCACAATCTCCAAAACATGCTCGAAGTCGTAGCAGGAGCAGAAGCAGAAGTCCAGTAG

Protein sequence

MRGRSYSPSPPPRGGYSRRGRSPSPRGRYTGRGRDPSTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPRDYYTGAPRGFGFVQYVDPADAADAKHRMDGQVFQGRELTVVFAEENRKKPTEMRVRERTSSRGRNDRRRSSARYSRSPRDSRSPPPRHARSRSRSRDDYSPSPKRRQYSRYVMLWFINFCLFPVHPKMESRVERGPIPVKAEVDHIPVHHNLQNMLEVVAGAEAEVQ

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo15080.1	Spo15080.1	mRNA

Homology

[Close]

BLAST of Spo15080.1 vs. NCBI nr
Match: gi|902232565|gb|KNA22688.1| (hypothetical protein SOVF_032050 [Spinacia oleracea])

HSP 1 Score: 356.7 bits (914), Expect = 3.200e-95
Identity = 182/183 (99.45%), Postives = 182/183 (99.45%), Query Frame = 1


		  
Query: 1   MRGRSYSPSPPPRGGYSRRGRSPSPRGRYTGRGRDPSTSLLVRNLRHDCRPEDLRRPFGQ 60
           MRGRSYSPSPPPRGGYSRRGRSPSPRGRYTGRGRDPSTSLLVRNLRHDCRPEDLRRPFGQ
Sbjct: 1   MRGRSYSPSPPPRGGYSRRGRSPSPRGRYTGRGRDPSTSLLVRNLRHDCRPEDLRRPFGQ 60

Query: 61  FGPLKDIYLPRDYYTGAPRGFGFVQYVDPADAADAKHRMDGQVFQGRELTVVFAEENRKK 120
           FGPLKDIYLPRDYYTGAPRGFGFVQYVDPADAADAKHRMDGQVFQGRELTVVFAEENRKK
Sbjct: 61  FGPLKDIYLPRDYYTGAPRGFGFVQYVDPADAADAKHRMDGQVFQGRELTVVFAEENRKK 120

Query: 121 PTEMRVRERTSSRGRNDRRRSSARYSRSPRDSRSPPPRHARSRSRSRDDYSPSPKRRQYS 180
           PTEMRVRERTSSRGRNDRRRSSARYSRSPRDSRSPPPRHARSRSRSRDDYSPSPKRRQYS
Sbjct: 121 PTEMRVRERTSSRGRNDRRRSSARYSRSPRDSRSPPPRHARSRSRSRDDYSPSPKRRQYS 180

Query: 181 RYV 184
           R V
Sbjct: 181 RSV 183

[Close]

BLAST of Spo15080.1 vs. NCBI nr
Match: gi|731325386|ref|XP_010673489.1| (PREDICTED: serine/arginine-rich SC35-like splicing factor SCL33 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 321.2 bits (822), Expect = 1.500e-84
Identity = 169/183 (92.35%), Postives = 174/183 (95.08%), Query Frame = 1


		  
Query: 1   MRGRSYSPSPPPRGGYSRRGRSPSPRGRYTGRGRDPSTSLLVRNLRHDCRPEDLRRPFGQ 60
           MRGRSYSPSP PRGGYSR+GRS SPRGRY+GRGRDPSTSLLVRNLRHDCRPEDLRRPFGQ
Sbjct: 1   MRGRSYSPSP-PRGGYSRKGRSRSPRGRYSGRGRDPSTSLLVRNLRHDCRPEDLRRPFGQ 60

Query: 61  FGPLKDIYLPRDYYTGAPRGFGFVQYVDPADAADAKHRMDGQVFQGRELTVVFAEENRKK 120
           FGPLKDIYLPRDYYTGAPRGFGFVQYVDPADAADAK+RMDGQ+FQGRELTVVFAEENRKK
Sbjct: 61  FGPLKDIYLPRDYYTGAPRGFGFVQYVDPADAADAKYRMDGQIFQGRELTVVFAEENRKK 120

Query: 121 PTEMRVRERTSSRGRNDRRRSSARYSRSPRDSRSPPPRHARSRSRSRDDYSPSPKRRQYS 180
           PTEMR RER  S GRNDRRRS ARYSRSPR SRSPPPRHARSRSRSRDDYSPSPKRRQ+S
Sbjct: 121 PTEMRTRER--SGGRNDRRRSPARYSRSPRISRSPPPRHARSRSRSRDDYSPSPKRRQHS 180

Query: 181 RYV 184
           R V
Sbjct: 181 RSV 180

[Close]

BLAST of Spo15080.1 vs. NCBI nr
Match: gi|870863168|gb|KMT14332.1| (hypothetical protein BVRB_4g071150 isoform B [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 310.5 bits (794), Expect = 2.600e-81
Identity = 169/200 (84.50%), Postives = 174/200 (87.00%), Query Frame = 1


		  
Query: 1   MRGRSYSPSPPPRGGYSRRGRSPSPRGRYTGRGRDPSTSLLVRNLRHDCRPEDLRRPFGQ 60
           MRGRSYSPSP PRGGYSR+GRS SPRGRY+GRGRDPSTSLLVRNLRHDCRPEDLRRPFGQ
Sbjct: 1   MRGRSYSPSP-PRGGYSRKGRSRSPRGRYSGRGRDPSTSLLVRNLRHDCRPEDLRRPFGQ 60

Query: 61  FGPLKDIYLPRDYYTG-----------------APRGFGFVQYVDPADAADAKHRMDGQV 120
           FGPLKDIYLPRDYYTG                 APRGFGFVQYVDPADAADAK+RMDGQ+
Sbjct: 61  FGPLKDIYLPRDYYTGVQVLKNFKSLLKLMFARAPRGFGFVQYVDPADAADAKYRMDGQI 120

Query: 121 FQGRELTVVFAEENRKKPTEMRVRERTSSRGRNDRRRSSARYSRSPRDSRSPPPRHARSR 180
           FQGRELTVVFAEENRKKPTEMR RER  S GRNDRRRS ARYSRSPR SRSPPPRHARSR
Sbjct: 121 FQGRELTVVFAEENRKKPTEMRTRER--SGGRNDRRRSPARYSRSPRISRSPPPRHARSR 180

Query: 181 SRSRDDYSPSPKRRQYSRYV 184
           SRSRDDYSPSPKRRQ+SR V
Sbjct: 181 SRSRDDYSPSPKRRQHSRSV 197

[Close]

BLAST of Spo15080.1 vs. NCBI nr
Match: gi|1012106636|ref|XP_015958851.1| (PREDICTED: serine/arginine-rich SC35-like splicing factor SCL33 [Arachis duranensis])

HSP 1 Score: 287.3 bits (734), Expect = 2.400e-74
Identity = 154/181 (85.08%), Postives = 159/181 (87.85%), Query Frame = 1


		  
Query: 1   MRGRSYSPSPPPRGGYSRRGRSPSPRGRYTGRGRDPSTSLLVRNLRHDCRPEDLRRPFGQ 60
           MRGRSYSPSPPP  GYSRRGRSPSPRGRY+GR RD  TSLLVRNLRHDCRPEDLRRPFGQ
Sbjct: 1   MRGRSYSPSPPPARGYSRRGRSPSPRGRYSGRSRDLPTSLLVRNLRHDCRPEDLRRPFGQ 60

Query: 61  FGPLKDIYLPRDYYTGAPRGFGFVQYVDPADAADAKHRMDGQVFQGRELTVVFAEENRKK 120
           FG LKDIYLP+DYYTG PRGFGFVQYVDPADAADAK+ MDGQV  GRELTVVFAEENRKK
Sbjct: 61  FGALKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKYHMDGQVLLGRELTVVFAEENRKK 120

Query: 121 PTEMRVRERTSSRGRNDRRRSSARYSRSPRDSRSPPPRHARSRSRSRDDYSPSPKRRQYS 180
           P+EMR RER   RGR DRRRS  RYSRSPR SRSPPPRH RSRS SRD YSP PKRR+YS
Sbjct: 121 PSEMRTRER---RGRYDRRRSPPRYSRSPRYSRSPPPRH-RSRSHSRDYYSPPPKRREYS 177

Query: 181 R 182
           R
Sbjct: 181 R 177

[Close]

BLAST of Spo15080.1 vs. NCBI nr
Match: gi|1021507755|ref|XP_016197214.1| (PREDICTED: serine/arginine-rich SC35-like splicing factor SCL33 [Arachis ipaensis])

HSP 1 Score: 285.0 bits (728), Expect = 1.200e-73
Identity = 153/181 (84.53%), Postives = 158/181 (87.29%), Query Frame = 1


		  
Query: 1   MRGRSYSPSPPPRGGYSRRGRSPSPRGRYTGRGRDPSTSLLVRNLRHDCRPEDLRRPFGQ 60
           MRGRSYSPSPPP  GYSRRGRSPSPRGRY+ R RD  TSLLVRNLRHDCRPEDLRRPFGQ
Sbjct: 1   MRGRSYSPSPPPARGYSRRGRSPSPRGRYSSRSRDLPTSLLVRNLRHDCRPEDLRRPFGQ 60

Query: 61  FGPLKDIYLPRDYYTGAPRGFGFVQYVDPADAADAKHRMDGQVFQGRELTVVFAEENRKK 120
           FG LKDIYLP+DYYTG PRGFGFVQYVDPADAADAK+ MDGQV  GRELTVVFAEENRKK
Sbjct: 61  FGALKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKYHMDGQVLLGRELTVVFAEENRKK 120

Query: 121 PTEMRVRERTSSRGRNDRRRSSARYSRSPRDSRSPPPRHARSRSRSRDDYSPSPKRRQYS 180
           P+EMR RER   RGR DRRRS  RYSRSPR SRSPPPRH RSRS SRD YSP PKRR+YS
Sbjct: 121 PSEMRTRER---RGRYDRRRSPPRYSRSPRYSRSPPPRH-RSRSHSRDYYSPPPKRREYS 177

Query: 181 R 182
           R
Sbjct: 181 R 177

[Close]

BLAST of Spo15080.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RTB1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_032050 PE=4 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 2.200e-95
Identity = 182/183 (99.45%), Postives = 182/183 (99.45%), Query Frame = 1


		  
Query: 1   MRGRSYSPSPPPRGGYSRRGRSPSPRGRYTGRGRDPSTSLLVRNLRHDCRPEDLRRPFGQ 60
           MRGRSYSPSPPPRGGYSRRGRSPSPRGRYTGRGRDPSTSLLVRNLRHDCRPEDLRRPFGQ
Sbjct: 1   MRGRSYSPSPPPRGGYSRRGRSPSPRGRYTGRGRDPSTSLLVRNLRHDCRPEDLRRPFGQ 60

Query: 61  FGPLKDIYLPRDYYTGAPRGFGFVQYVDPADAADAKHRMDGQVFQGRELTVVFAEENRKK 120
           FGPLKDIYLPRDYYTGAPRGFGFVQYVDPADAADAKHRMDGQVFQGRELTVVFAEENRKK
Sbjct: 61  FGPLKDIYLPRDYYTGAPRGFGFVQYVDPADAADAKHRMDGQVFQGRELTVVFAEENRKK 120

Query: 121 PTEMRVRERTSSRGRNDRRRSSARYSRSPRDSRSPPPRHARSRSRSRDDYSPSPKRRQYS 180
           PTEMRVRERTSSRGRNDRRRSSARYSRSPRDSRSPPPRHARSRSRSRDDYSPSPKRRQYS
Sbjct: 121 PTEMRVRERTSSRGRNDRRRSSARYSRSPRDSRSPPPRHARSRSRSRDDYSPSPKRRQYS 180

Query: 181 RYV 184
           R V
Sbjct: 181 RSV 183

[Close]

BLAST of Spo15080.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FES7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g071150 PE=4 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 1.000e-84
Identity = 169/183 (92.35%), Postives = 174/183 (95.08%), Query Frame = 1


		  
Query: 1   MRGRSYSPSPPPRGGYSRRGRSPSPRGRYTGRGRDPSTSLLVRNLRHDCRPEDLRRPFGQ 60
           MRGRSYSPSP PRGGYSR+GRS SPRGRY+GRGRDPSTSLLVRNLRHDCRPEDLRRPFGQ
Sbjct: 1   MRGRSYSPSP-PRGGYSRKGRSRSPRGRYSGRGRDPSTSLLVRNLRHDCRPEDLRRPFGQ 60

Query: 61  FGPLKDIYLPRDYYTGAPRGFGFVQYVDPADAADAKHRMDGQVFQGRELTVVFAEENRKK 120
           FGPLKDIYLPRDYYTGAPRGFGFVQYVDPADAADAK+RMDGQ+FQGRELTVVFAEENRKK
Sbjct: 61  FGPLKDIYLPRDYYTGAPRGFGFVQYVDPADAADAKYRMDGQIFQGRELTVVFAEENRKK 120

Query: 121 PTEMRVRERTSSRGRNDRRRSSARYSRSPRDSRSPPPRHARSRSRSRDDYSPSPKRRQYS 180
           PTEMR RER  S GRNDRRRS ARYSRSPR SRSPPPRHARSRSRSRDDYSPSPKRRQ+S
Sbjct: 121 PTEMRTRER--SGGRNDRRRSPARYSRSPRISRSPPPRHARSRSRSRDDYSPSPKRRQHS 180

Query: 181 RYV 184
           R V
Sbjct: 181 RSV 180

[Close]

BLAST of Spo15080.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CLF8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g071150 PE=4 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 1.800e-81
Identity = 169/200 (84.50%), Postives = 174/200 (87.00%), Query Frame = 1


		  
Query: 1   MRGRSYSPSPPPRGGYSRRGRSPSPRGRYTGRGRDPSTSLLVRNLRHDCRPEDLRRPFGQ 60
           MRGRSYSPSP PRGGYSR+GRS SPRGRY+GRGRDPSTSLLVRNLRHDCRPEDLRRPFGQ
Sbjct: 1   MRGRSYSPSP-PRGGYSRKGRSRSPRGRYSGRGRDPSTSLLVRNLRHDCRPEDLRRPFGQ 60

Query: 61  FGPLKDIYLPRDYYTG-----------------APRGFGFVQYVDPADAADAKHRMDGQV 120
           FGPLKDIYLPRDYYTG                 APRGFGFVQYVDPADAADAK+RMDGQ+
Sbjct: 61  FGPLKDIYLPRDYYTGVQVLKNFKSLLKLMFARAPRGFGFVQYVDPADAADAKYRMDGQI 120

Query: 121 FQGRELTVVFAEENRKKPTEMRVRERTSSRGRNDRRRSSARYSRSPRDSRSPPPRHARSR 180
           FQGRELTVVFAEENRKKPTEMR RER  S GRNDRRRS ARYSRSPR SRSPPPRHARSR
Sbjct: 121 FQGRELTVVFAEENRKKPTEMRTRER--SGGRNDRRRSPARYSRSPRISRSPPPRHARSR 180

Query: 181 SRSRDDYSPSPKRRQYSRYV 184
           SRSRDDYSPSPKRRQ+SR V
Sbjct: 181 SRSRDDYSPSPKRRQHSRSV 197

[Close]

BLAST of Spo15080.1 vs. UniProtKB/TrEMBL
Match: A0A068V7Q4_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00019309001 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 5.900e-72
Identity = 148/183 (80.87%), Postives = 155/183 (84.70%), Query Frame = 1


		  
Query: 1   MRGRSYSPSPPPRGGYSRRGRSPSPRGRYTGRGRDPSTSLLVRNLRHDCRPEDLRRPFGQ 60
           MRGRSYSPSPP   GY RRGRSPSPRGRY GR RD  TSLLVRNLRHDCRPEDLRRPFGQ
Sbjct: 1   MRGRSYSPSPPR--GYGRRGRSPSPRGRYGGRARDAPTSLLVRNLRHDCRPEDLRRPFGQ 60

Query: 61  FGPLKDIYLPRDYYTGAPRGFGFVQYVDPADAADAKHRMDGQVFQGRELTVVFAEENRKK 120
           FGP+KDIYLPRDYYTG PRGFGFVQYVDPADA +AK++MDG VFQGR+LTVVFAEENRKK
Sbjct: 61  FGPIKDIYLPRDYYTGEPRGFGFVQYVDPADAGEAKYQMDGHVFQGRQLTVVFAEENRKK 120

Query: 121 PTEMRVRERTSSRGRNDRRRSSARYSRSPRDSRSPPPRHARSRSRSRDDYSPSPKRRQYS 180
           P EMR RER       DRRRS  RYSRSP+ SRSPP R+ARS SRSRD YSP PKRRQYS
Sbjct: 121 PLEMRARERVGRGRHYDRRRSPVRYSRSPQYSRSPPSRYARSGSRSRDYYSPPPKRRQYS 180

Query: 181 RYV 184
           R V
Sbjct: 181 RSV 181

[Close]

BLAST of Spo15080.1 vs. UniProtKB/TrEMBL
Match: M5WJH1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010237mg PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 1.000e-71
Identity = 156/221 (70.59%), Postives = 170/221 (76.92%), Query Frame = 1


		  
Query: 1   MRGRSYSPSPPPRGGYSRRGRSPSPRGRYTGRGRDPSTSLLVRNLRHDCRPEDLRRPFGQ 60
           MRGRSYSPS PPRGGY RRGRSPSPRGRY GR RD  TSLLVRNLRHDCRPEDLR+PFGQ
Sbjct: 1   MRGRSYSPS-PPRGGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRPEDLRKPFGQ 60

Query: 61  FGPLKDIYLPRDYYTGAPRGFGFVQYVDPADAADAKHRMDGQVFQGRELTVVFAEENRKK 120
           FG LKD+YLP+DYYTG PRGFGFVQ+V+PADA +AK++MDGQ+ QGRE+TVVFAEENRKK
Sbjct: 61  FGTLKDVYLPKDYYTGEPRGFGFVQFVEPADAEEAKYQMDGQLLQGREVTVVFAEENRKK 120

Query: 121 PTEMRVRERTSSR-GR-NDRRRSSARYSRSPRDSRSPPPRHARSRSRSRDDYSPSPKRRQ 180
           P++MR RER S+R GR  DRRRS  RYSRSPR SRSPPPRH RSRSRS D YSP PKRR 
Sbjct: 121 PSDMRHRERASTRSGRYRDRRRSPPRYSRSPRYSRSPPPRHTRSRSRSHDYYSPPPKRRD 180

Query: 181 YSRYVMLWFINFCLFPVHPKMESR---VERGPIPVKAEVDH 217
           YSR V          P   +  SR     R P P K    H
Sbjct: 181 YSRSVS---------PPQERRYSREKSFSRSPPPYKGSRSH 211

[Close]

BLAST of Spo15080.1 vs. ExPASy Swiss-Prot
Match: SRC33_ARATH (Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana GN=SCL33 PE=1 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 1.600e-62
Identity = 132/176 (75.00%), Postives = 140/176 (79.55%), Query Frame = 1


		  
Query: 1   MRGRSYSPSPPPRGGYSRRGRSPSPRGRYTGRGRDPSTSLLVRNLRHDCRPEDLRRPFGQ 60
           MRGRSY+PSPP   GY RRGRSPSPRGRY GR RD  TSLLVRNLRHDCR EDLR+ F Q
Sbjct: 1   MRGRSYTPSPPR--GYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQ 60

Query: 61  FGPLKDIYLPRDYYTGAPRGFGFVQYVDPADAADAKHRMDGQVFQGRELTVVFAEENRKK 120
           FGP+KDIYLPRDYYTG PRGFGFVQ++DPADAADAKH MDG +  GRELTVVFAEENRKK
Sbjct: 61  FGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKK 120

Query: 121 PTEMRVRERTSSRGRNDRRRSSARYSRSPRDSRSPPPRHARSRSRSRDDYSPSPKR 177
           PTEMR RER   R R+ RR     YSR    SRSPPPR  RSRSRS D YSP P+R
Sbjct: 121 PTEMRARERGGGRFRDRRRTPPRYYSR----SRSPPPRRGRSRSRSGDYYSPPPRR 170

[Close]

BLAST of Spo15080.1 vs. ExPASy Swiss-Prot
Match: SL30A_ARATH (Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana GN=SCL30A PE=1 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 8.200e-59
Identity = 130/180 (72.22%), Postives = 140/180 (77.78%), Query Frame = 1


		  
Query: 1   MRGRSYSPSPPPRGGYSRRGRSPSPRGRYTG-RGRDPSTSLLVRNLRHDCRPEDLRRPFG 60
           MRGRSY+PSPP   GY RRGRSPSPRGR+ G R  D  TSLLVRNLRHDCR EDLRRPF 
Sbjct: 1   MRGRSYTPSPPR--GYGRRGRSPSPRGRFGGSRDSDLPTSLLVRNLRHDCRQEDLRRPFE 60

Query: 61  QFGPLKDIYLPRDYYTGAPRGFGFVQYVDPADAADAKHRMDGQVFQGRELTVVFAEENRK 120
           QFGP+KDIYLPRDYYTG PRGFGF+Q++DPADAA+AKH+MDG +  GRELTVVFAEENRK
Sbjct: 61  QFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENRK 120

Query: 121 KPTEMRVRERTSSRGR-NDRRRSSARYSRSPRDSRSPPPRHARSRSRSRDDYSPSPKRRQ 179
           KPTEMR R+R     R  DRRRS  RYSRSP     PP R  RSRSRSR   SP  KR Q
Sbjct: 121 KPTEMRTRDRGGRSNRFQDRRRSPPRYSRSP-----PPRRGRRSRSRSRGYNSPPAKRHQ 173

[Close]

BLAST of Spo15080.1 vs. ExPASy Swiss-Prot
Match: SRC30_ARATH (Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana GN=SCL30 PE=1 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.300e-35
Identity = 102/189 (53.97%), Postives = 125/189 (66.14%), Query Frame = 1


		  
Query: 4   RSYSPS--PPPRGGYSRRGRSPSPR-------GRYTGRGRDPST--SLLVRNLRHDCRPE 63
           R YSP    PPR GY  RGRSP P        G   G GR  S+  SLLVRN+  DCRPE
Sbjct: 2   RRYSPPYYSPPRRGYGGRGRSPPPPPPRRGYGGGGGGGGRRGSSHGSLLVRNIPLDCRPE 61

Query: 64  DLRRPFGQFGPLKDIYLPRDYYTGAPRGFGFVQYVDPADAADAKHRMDGQVFQGRELTVV 123
           +LR PF +FGP++D+Y+PRDYY+G PRGF FV++VD  DA +A+  M+ + F GRE+TVV
Sbjct: 62  ELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVV 121

Query: 124 FAEENRKKPTEMRVRERTSSR---GRNDRRRSSARYSRSPRDSRSP-PPRHARSRSRSRD 178
            A E+RK+P EMRV+ RT SR   G  DR    +R SRS   SRSP  P  +RSR RSR 
Sbjct: 122 VASESRKRPEEMRVKTRTRSREPSGSRDRSHGRSR-SRSISRSRSPRRPSDSRSRYRSR- 181

[Close]

BLAST of Spo15080.1 vs. ExPASy Swiss-Prot
Match: SRC28_ARATH (Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana GN=SCL28 PE=1 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.700e-30
Identity = 96/188 (51.06%), Postives = 111/188 (59.04%), Query Frame = 1


		  
Query: 2   RGRSYSPSPPPRGGYSRRGRSPSPRGRYTGRGRDPSTS----LLVRNLRHDCRPEDLRRP 61
           R RSYSP P  R     R      R R     RD  +S    LL+RNL  D RP DLR  
Sbjct: 7   RSRSYSPRPRDRSPPRERKGYDDNRLRERPSSRDHESSGPSGLLIRNLPLDARPNDLRDS 66

Query: 62  FGQFGPLKDIYLPRDYYTGAPRGFGFVQYVDPADAADAKHRMDGQVFQGRELTVVFAEEN 121
           F +FGPLKDIYLPR+YYTG PRGFGFV+Y    DAA+A  RM+ +V  GRE+ +VFAEEN
Sbjct: 67  FERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGREIAIVFAEEN 126

Query: 122 RKKPTEMRVRERTSSRGRNDRR---RSSARYSRSPRDSRSPPPRHAR-SRSRSRDDYSPS 181
           RK P EMR    TS R  + +R   RS  R  RS   SRSPP R +R S+ R  D YSP 
Sbjct: 127 RKTPQEMRTTNGTSGRHGDYKRTSHRSPRRRYRSHSRSRSPPRRESRHSKVREDDLYSPR 186

[Close]

BLAST of Spo15080.1 vs. ExPASy Swiss-Prot
Match: SRS10_HUMAN (Serine/arginine-rich splicing factor 10 OS=Homo sapiens GN=SRSF10 PE=1 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 5.500e-23
Identity = 69/148 (46.62%), Postives = 92/148 (62.16%), Query Frame = 1


		  
Query: 34  RDPSTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPRDYYTGAPRGFGFVQYVDPADAA 93
           R P+TSL VRN+  D R EDLRR FG++GP+ D+Y+P D+YT  PRGF +VQ+ D  DA 
Sbjct: 6   RPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAE 65

Query: 94  DAKHRMDGQVFQGRELTVVFAEENRKKPTEMRVRERTSSRGRNDRRRSSARYSRSPRDSR 153
           DA H +D +   GR++ + FA+ +RK P +M+ +E     GRN    SS+RY    R  R
Sbjct: 66  DALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKE-----GRN--VYSSSRYDDYDRYRR 125

Query: 154 SPPPRHARSRSRSRD-DYSPSPKRRQYS 181
           S    + R RSRSR  DY+    RR YS
Sbjct: 126 SRSRSYERRRSRSRSFDYN---YRRSYS 143

[Close]

BLAST of Spo15080.1 vs. TAIR (Arabidopsis)
Match: AT1G55310.3 (SC35-like splicing factor 33)

HSP 1 Score: 231.5 bits (589), Expect = 5.500e-61
Identity = 131/188 (69.68%), Postives = 140/188 (74.47%), Query Frame = 1


		  
Query: 1   MRGRSYSPSPPPRGGYSRRGRSPSPRGRYTGRGRDPSTSLLVRNLRHDCRPEDLRRPFGQ 60
           MRGRSY+PSPP   GY RRGRSPSPRGRY GR RD  TSLLVRNLRHDCR EDLR+ F Q
Sbjct: 1   MRGRSYTPSPPR--GYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQ 60

Query: 61  FGPLKDIYLPRDYYTGA------------PRGFGFVQYVDPADAADAKHRMDGQVFQGRE 120
           FGP+KDIYLPRDYYTG+            PRGFGFVQ++DPADAADAKH MDG +  GRE
Sbjct: 61  FGPVKDIYLPRDYYTGSHLCTDTCKASRDPRGFGFVQFMDPADAADAKHHMDGYLLLGRE 120

Query: 121 LTVVFAEENRKKPTEMRVRERTSSRGRNDRRRSSARYSRSPRDSRSPPPRHARSRSRSRD 177
           LTVVFAEENRKKPTEMR RER       DRRR+  RY      SRSPPPR  RSRSRS D
Sbjct: 121 LTVVFAEENRKKPTEMRARERGGGSRFRDRRRTPPRYYSR---SRSPPPRRGRSRSRSGD 180

[Close]

BLAST of Spo15080.1 vs. TAIR (Arabidopsis)
Match: AT3G13570.1 (SC35-like splicing factor 30A)

HSP 1 Score: 228.4 bits (581), Expect = 4.600e-60
Identity = 130/180 (72.22%), Postives = 140/180 (77.78%), Query Frame = 1


		  
Query: 1   MRGRSYSPSPPPRGGYSRRGRSPSPRGRYTG-RGRDPSTSLLVRNLRHDCRPEDLRRPFG 60
           MRGRSY+PSPP   GY RRGRSPSPRGR+ G R  D  TSLLVRNLRHDCR EDLRRPF 
Sbjct: 1   MRGRSYTPSPPR--GYGRRGRSPSPRGRFGGSRDSDLPTSLLVRNLRHDCRQEDLRRPFE 60

Query: 61  QFGPLKDIYLPRDYYTGAPRGFGFVQYVDPADAADAKHRMDGQVFQGRELTVVFAEENRK 120
           QFGP+KDIYLPRDYYTG PRGFGF+Q++DPADAA+AKH+MDG +  GRELTVVFAEENRK
Sbjct: 61  QFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENRK 120

Query: 121 KPTEMRVRERTSSRGR-NDRRRSSARYSRSPRDSRSPPPRHARSRSRSRDDYSPSPKRRQ 179
           KPTEMR R+R     R  DRRRS  RYSRSP     PP R  RSRSRSR   SP  KR Q
Sbjct: 121 KPTEMRTRDRGGRSNRFQDRRRSPPRYSRSP-----PPRRGRRSRSRSRGYNSPPAKRHQ 173

[Close]

BLAST of Spo15080.1 vs. TAIR (Arabidopsis)
Match: AT3G55460.1 (SC35-like splicing factor 30)

HSP 1 Score: 151.4 bits (381), Expect = 7.200e-37
Identity = 102/189 (53.97%), Postives = 125/189 (66.14%), Query Frame = 1


		  
Query: 4   RSYSPS--PPPRGGYSRRGRSPSPR-------GRYTGRGRDPST--SLLVRNLRHDCRPE 63
           R YSP    PPR GY  RGRSP P        G   G GR  S+  SLLVRN+  DCRPE
Sbjct: 2   RRYSPPYYSPPRRGYGGRGRSPPPPPPRRGYGGGGGGGGRRGSSHGSLLVRNIPLDCRPE 61

Query: 64  DLRRPFGQFGPLKDIYLPRDYYTGAPRGFGFVQYVDPADAADAKHRMDGQVFQGRELTVV 123
           +LR PF +FGP++D+Y+PRDYY+G PRGF FV++VD  DA +A+  M+ + F GRE+TVV
Sbjct: 62  ELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVV 121

Query: 124 FAEENRKKPTEMRVRERTSSR---GRNDRRRSSARYSRSPRDSRSP-PPRHARSRSRSRD 178
            A E+RK+P EMRV+ RT SR   G  DR    +R SRS   SRSP  P  +RSR RSR 
Sbjct: 122 VASESRKRPEEMRVKTRTRSREPSGSRDRSHGRSR-SRSISRSRSPRRPSDSRSRYRSR- 181

[Close]

BLAST of Spo15080.1 vs. TAIR (Arabidopsis)
Match: AT5G18810.1 (SC35-like splicing factor 28)

HSP 1 Score: 133.7 bits (335), Expect = 1.500e-31
Identity = 96/188 (51.06%), Postives = 111/188 (59.04%), Query Frame = 1


		  
Query: 2   RGRSYSPSPPPRGGYSRRGRSPSPRGRYTGRGRDPSTS----LLVRNLRHDCRPEDLRRP 61
           R RSYSP P  R     R      R R     RD  +S    LL+RNL  D RP DLR  
Sbjct: 7   RSRSYSPRPRDRSPPRERKGYDDNRLRERPSSRDHESSGPSGLLIRNLPLDARPNDLRDS 66

Query: 62  FGQFGPLKDIYLPRDYYTGAPRGFGFVQYVDPADAADAKHRMDGQVFQGRELTVVFAEEN 121
           F +FGPLKDIYLPR+YYTG PRGFGFV+Y    DAA+A  RM+ +V  GRE+ +VFAEEN
Sbjct: 67  FERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGREIAIVFAEEN 126

Query: 122 RKKPTEMRVRERTSSRGRNDRR---RSSARYSRSPRDSRSPPPRHAR-SRSRSRDDYSPS 181
           RK P EMR    TS R  + +R   RS  R  RS   SRSPP R +R S+ R  D YSP 
Sbjct: 127 RKTPQEMRTTNGTSGRHGDYKRTSHRSPRRRYRSHSRSRSPPRRESRHSKVREDDLYSPR 186

[Close]

BLAST of Spo15080.1 vs. TAIR (Arabidopsis)
Match: AT5G64200.1 (ortholog of human splicing factor SC35)

HSP 1 Score: 85.1 bits (209), Expect = 6.300e-17
Identity = 66/147 (44.90%), Postives = 87/147 (59.18%), Query Frame = 1


		  
Query: 39  SLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPRDYYTGAPRGFGFVQYVDPADAADAKHR 98
           SLLV N+      +DL   F ++G + D+++PRD  TG  RGF FV+Y    +A  A  R
Sbjct: 17  SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVER 76

Query: 99  MDGQVFQGRELTVVFAE--ENRKKPTEMRVRERTSSRGRNDRRRSSARYSRSPRDSRSPP 158
           +DG+V  GRE+TV FA+   N +K ++ RV E    + R  R RS  R SRSPR SRSPP
Sbjct: 77  LDGRVVDGREITVQFAKYGPNAEKISKGRVVE-PPPKSRRSRSRSPRR-SRSPRRSRSPP 136

Query: 159 ----PRHARS-RSRSRDDYSPSPKRRQ 179
               PR +RS R RSRDDY     R++
Sbjct: 137 RRRSPRRSRSPRRRSRDDYREKDYRKR 161

The following BLAST results are available for this feature:

BLAST of Spo15080.1 vs. NCBI nr
BLAST of Spo15080.1 vs. UniProtKB/TrEMBL
BLAST of Spo15080.1 vs. ExPASy Swiss-Prot
BLAST of Spo15080.1 vs. TAIR (Arabidopsis)

BLAST of Spo15080.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902232565\|gb\|KNA22688.1\|	3.2e-95	99.4	hypothetical protein SOVF_0320...	[more]
gi\|731325386\|ref\|XP_010673489.1\|	1.5e-84	92.3	PREDICTED: serine/arginine-ric...	[more]
gi\|870863168\|gb\|KMT14332.1\|	2.6e-81	84.5	hypothetical protein BVRB_4g07...	[more]
gi\|1012106636\|ref\|XP_015958851.1\|	2.4e-74	85.0	PREDICTED: serine/arginine-ric...	[more]
gi\|1021507755\|ref\|XP_016197214.1\|	1.2e-73	84.5	PREDICTED: serine/arginine-ric...	[more]

BLAST of Spo15080.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RTB1_SPIOL	2.2e-95	99.4	Uncharacterized protein OS=Spi...	[more]
A0A0J8FES7_BETVU	1.0e-84	92.3	Uncharacterized protein OS=Bet...	[more]
A0A0J8CLF8_BETVU	1.8e-81	84.5	Uncharacterized protein OS=Bet...	[more]
A0A068V7Q4_COFCA	5.9e-72	80.8	Uncharacterized protein OS=Cof...	[more]
M5WJH1_PRUPE	1.0e-71	70.5	Uncharacterized protein OS=Pru...	[more]

BLAST of Spo15080.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
SRC33_ARATH	1.6e-62	75.0	Serine/arginine-rich SC35-like...	[more]
SL30A_ARATH	8.2e-59	72.2	Serine/arginine-rich SC35-like...	[more]
SRC30_ARATH	1.3e-35	53.9	Serine/arginine-rich SC35-like...	[more]
SRC28_ARATH	2.7e-30	51.0	Serine/arginine-rich SC35-like...	[more]
SRS10_HUMAN	5.5e-23	46.6	Serine/arginine-rich splicing ...	[more]

BLAST of Spo15080.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT1G55310.3	5.5e-61	69.6	SC35-like splicing factor 33	[more]
AT3G13570.1	4.6e-60	72.2	SC35-like splicing factor 30A	[more]
AT3G55460.1	7.2e-37	53.9	SC35-like splicing factor 30	[more]
AT5G18810.1	1.5e-31	51.0	SC35-like splicing factor 28	[more]
AT5G64200.1	6.3e-17	44.9	ortholog of human splicing fac...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 40..109 score: 4.9
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 39..112 score: 4.4
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 38..116 score: 17
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	3.30.70.330		coord: 9..120 score: 1.2
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 34..143 score: 4.16
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 8..183 score: 8.6
None	No IPR available	PANTHER	PTHR23147:SF6	SUBFAMILY NOT NAMED	coord: 8..183 score: 8.6

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006448	regulation of translational elongation
biological_process	GO:0009742	brassinosteroid mediated signaling pathway
biological_process	GO:0006470	protein dephosphorylation
biological_process	GO:0050790	regulation of catalytic activity
biological_process	GO:0042176	regulation of protein catabolic process
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0000502	proteasome complex
cellular_component	GO:0005840	ribosome
molecular_function	GO:0036459	thiol-dependent ubiquitinyl hydrolase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0030234	enzyme regulator activity
molecular_function	GO:0005488	binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004721	phosphoprotein phosphatase activity
molecular_function	GO:0030145	manganese ion binding
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0003746	translation elongation factor activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo03473	0.70	Barchart \| Table
Spo02838	0.69	Barchart \| Table
Spo03244	0.67	Barchart \| Table
Spo00062	0.66	Barchart \| Table
Spo15666	0.65	Barchart \| Table