Spo15234 (gene) | SpinachBase

Overview


Name	Spo15234
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr4 : 80374526 .. 80377735 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGATCTTTTAATTCGAATGAAGAGACACAAAATTTGAGTAAGAATTTCTCTTTGAATCTAGGTTAGAACTGGTTATTGCATTATATTTGCATGATGTTTTGGTAATTTTTGTTTTCTGATGAGATTGGATGAAATTACTTTGTTGATAGATTGTTGTTTATGTTTGAGTTGCAATTGATGTTTTTTTCCCCTTCTACTTTCCATTAATTAGATAATTAAAATTCCAGTTAACCTCCAAACATGGTAGAATTTGAAATACCAGAATTGAAATTCTTATATTTCCCAAACATATACGGAGTAATTTGGATTTGAAAGTTGGAATTTGAATTTCTAGATTTAAAATGAAACATTTGAAATCAAAGTATGATATCCAAACACTACCTAACATTACTTTGTTGCTTCTTACATTACATTTGAAAATAAACGTTGTTTGCTTCATTTTTAGCGTGATTTTGCTCATTTTTTTACGAGGTTATCCATGAATTCTGCCGAGTATGTCTAAACCTTATGTTTCCCGTATTTGGAATTTTTCTAGCATATTTCAATTACTCATGGGTCAACAGACAACAAGAAAAAAGACAAGAAGCAAGAACTAAAAATTATAACAAAGAAGCTCCCTCCGATGAGCCCAAGTCATGAGTTGGACCGGAAACCGCAAAATATTCGAATAAGGCCAGGAGATTCCGCAATTGGAGAGAGGTTAAGTCACCAAAATTGGATCAGGGAGAAGATTCCAATGTAACAACTAACAAGGAACAACACTAGATTAGAAGAATCTGAATAAATAAGAAGTTAAGAACTTTAGTGAAACCTCAACGAATCACCATATGAAGGCCCAAATGACAAGCCATCAACTCAACCTAAAGCGCAGAACCAAGAAAACAGGCCCGGGCTCCTCCCCCAGAGATAAAAGTACACATAGGTTGATGCAAACACAAGCTAAGCAAGATTACTTGTACAAGATTTGACAAGCTAAGCAAGAAATTGTAAACAATTGTGCTTTCTTTAAAAATTGTTTTACATGAAAATATTCCTCGTTTAAAATATTATTCCGTCAAAATAAATGAGGCAGGAGGTCATGGTGTAATGTTAGGTGAGCTAACCTGACATAATTCTGAAATCAGTTACCCTTAAGTAGTTAGATATGTTGTTACTTTGATATGTTAGTGTAGTATATAAATACAATGTAATCCATCATTATATTACTCAATCAATAAAATTTACAAAGTTTCCTACTCTTCTCTCTTCTATCTATTGTTTTTTCTCTTCTCTTTCTTTCTTAAGAATTTTGTTTCTCTCTTTCTCTTTTTCTTTCTCTATCTTATATTTTCCTCCATTAACACATCAAGCAGTTGAGAAAGGTATCAGAGCCAACCTACTGCAAATTGAGTGATTCGATTGAATTGTAGTTCTATTCTTCGATATTGGAGTCAGCAGTTCTTGAAGCTGGGAATTAGTGGGGTTAGAAATCGGGACAAATTGTTGAAGAAATCAAGGTAAGAAATCAAGAAGTATAACTGATTGATTGCTCAATTTTCAATCTTCTACACGTTTTTCTGCCATTATTACAACTTGATTTCCTAGTTTTTTGAAGTATTTTTCATGCATTCAAAGTGTTTGATAAAATGTCAAGCAGAAATCCAACATGAATTTAGCTAAAATCAGTTACAATAAACTTCCAGGATAGTTTCCTCTTCACAGTGATCATTTAAACAAACTCAATTTCTGAATTTGGAGTCCAATTCTATATACCCAATTTCTGCAAATCTAAATTACAATTCAAGATCATGGGGAAAATTGAAGAAACATGTGATAAGATTCTACAAATTCTTGTTGAGATGAAGGAATTAACAACATCAAGAAGAGGTGGTAAATCTGTGCAATCTTCTACTGTTTTTGAGATCAATTCAACCGGGTCTCATGAGTATAACCCTGTTTTCCAAAATTTTATGGGTCTCATCCTAGGACATGGATAAAGAATTGCAACAAGAATTCCACTCTTCATGATATTCTTGAAGATGGTGTTAAAGTGGAATTAGCTTCTCAAAACATGTTTGATAAGGCTAAAAAATAGTCTGATTCATACTTGTTTGGGAGGAAGTCTTACATTGATTGGACATACTTCTTTCTTGATGTGTCTGCAAAATTTAGAAATGATGCATCTATAAAAGTGGAAGACTGTAATAGTTATATACCCAAACAAGAATTATTAGTTGAATCAAAGTTATAATTTCATGGTTATGATAATGGGTTACTAGTAACCAAGTCTGGAGGTTTTAGTTATGAACCAATTTCCAATGTTGATAGTCAGTCATGCAAGACTCTTTCAGTTAATAATTCGTGTAGTTACTTGAATTCAAGTTCATGTGTTGTTGCATCCATGATGGATGAAGAGCAAGAGGAAGTAGTGGAATGTGTTGGGCTTGTAGAAGAACAATTGAAATGTTCCCCTGTATCACATTCTTCTCTAGTAGAAGTTGTCACCTCGTCTACAAACACAAAACAACTAATTCTTCCATCACCATCAATTGAAAATAACCTACTGATCTCAACCGAAATCAAGCCAAAATAGTCTGTCAGATTTCAGGATTCTGAGTATGTTTCAGCTAATGTTGAGGTGAAGATGGTTACCAAAACGTTTGGTGATCTTTCTGTTAAGTTCCTAAGCTTAGGTATGTTGCAAGATTTAGGGATTTTCTGGAAAGTGTCTAAACAACAACTATATGATAATACAATGCATGGGGGCTGCAAGGTGTATGATAAGGATAATCGTTTTGTCAATTTAGCACATGAGGATATGTTGCTGGACATATATTGGTTGATCTTAAAGAAGACAAAGCCTTTGCACTATATTCGGATACAAGCTTTGAGAAAACATTCAAAAGTGACGATATATGTTTAGTATTTCATTATGAACTACTTGCTGAAAAGGGTTTGACTTCCTATATGACAGATGAAGGGAAGGGGAAATTATCATGCAGTGATTCTGATGGCATTCCTCTTAAAGATGAACTAACCAACCTGCCGGAATCTAGCAAGGAAGAAGTTGGGATTTCTAAATCATATGTTACAGCAACTCGATGTTTCAATGATCAATTTCGCAAAACAATTGTTGATTAACTGCATGACAACTCTATCAGACCACTTCCTAAGCCACCTCCTTTACATTTTCCAACATGTTTGATGCTAGGAAAATGCATGTTCCAG

mRNA sequence

ATGAGATCTTTTAATTCGAATGAAGAGACACAAAATTTGACATATTTCAATTACTCATGGGTCAACAGACAACAAGAAAAAAGACAAGAAGCAAGAACTAAAAATTATAACAAAGAAGCTCCCTCCGATGAGCCCAATTCTATTCTTCGATATTGGAGTCAGCAGTTCTTGAAGCTGGGAATTAGTGGGGTTAGAAATCGGGACAAATTGTTGAAGAAATCAAGATGAAGGGAAGGGGAAATTATCATGCAGTGATTCTGATGGCATTCCTCTTAAAGATGAACTAACCAACCTGCCGGAATCTAGCAAGGAAGAAGTTGGGATTTCTAAATCATATGTTACAGCAACTCGATGTTTCAATGATCAATTTCGCAAAACAATTGTTGATTAACTGCATGACAACTCTATCAGACCACTTCCTAAGCCACCTCCTTTACATTTTCCAACATGTTTGATGCTAGGAAAATGCATGTTCCAG

Coding sequence (CDS)

ATGAGATCTTTTAATTCGAATGAAGAGACACAAAATTTGACATATTTCAATTACTCATGGGTCAACAGACAACAAGAAAAAAGACAAGAAGCAAGAACTAAAAATTATAACAAAGAAGCTCCCTCCGATGAGCCCAATTCTATTCTTCGATATTGGAGTCAGCAGTTCTTGAAGCTGGGAATTAGTGGGGTTAGAAATCGGGACAAATTGTTGAAGAAATCAAGATGA

Protein sequence

MRSFNSNEETQNLTYFNYSWVNRQQEKRQEARTKNYNKEAPSDEPNSILRYWSQQFLKLGISGVRNRDKLLKKSR

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo15234.1	Spo15234.1	mRNA

Homology

The following BLAST results are available for this feature:

BLAST of Spo15234.1 vs. NCBI nr
BLAST of Spo15234.1 vs. UniProtKB/TrEMBL
BLAST of Spo15234.1 vs. ExPASy Swiss-Prot
BLAST of Spo15234.1 vs. TAIR (Arabidopsis)

BLAST of Spo15234.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo15234.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo15234.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo15234.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019482	beta-alanine metabolic process
biological_process	GO:0009698	phenylpropanoid metabolic process
biological_process	GO:0006635	fatty acid beta-oxidation
biological_process	GO:0006550	isoleucine catabolic process
biological_process	GO:0006552	leucine catabolic process
biological_process	GO:0009733	response to auxin
biological_process	GO:0009409	response to cold
biological_process	GO:0006574	valine catabolic process
biological_process	GO:0016123	xanthophyll biosynthetic process
biological_process	GO:0016119	carotene metabolic process
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0000785	chromatin
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005777	peroxisome
cellular_component	GO:0016020	membrane
molecular_function	GO:0010291	carotene beta-ring hydroxylase activity
molecular_function	GO:0003860	3-hydroxyisobutyryl-CoA hydrolase activity
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo16576	0.68	Barchart \| Table
Spo14393	0.68	Barchart \| Table
Spo18130	0.67	Barchart \| Table
Spo24430	0.67	Barchart \| Table
Spo27239	0.66	Barchart \| Table
Spo13499	0.66	Barchart \| Table
Spo21833	0.66	Barchart \| Table
Spo04778	0.66	Barchart \| Table
Spo16218	0.65	Barchart \| Table
Spo18223	0.65	Barchart \| Table
Spo24697	0.65	Barchart \| Table