Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.CAACTTTGGCCCTATGAGATTGCTGCAATTAGGTTGAAACATTCACTCACCTTCTATTCTCGAATTAGGTTGTACGCAATTCACTCACCTTCAATTCTCACCCAATTATGCAGATTTAGATCGCATTCAAAAAAAAAAAAAAACCAGTGAAACCTATGTTTTGCGATTCTCCATAGGCAATTTCTTCCCCCTTCTACACAAATCTTACCCCCATTAACTCCCTTCTTCATCTTTGGTCTGCTCCTTCGCCGCGCGGCCATCGGAAAAGTTTCTTGCTCTCAACTCCGTGAACCCTGTTGTAGAAAATTGGAGGGAGAAAGATGGATTTATCTAGGCTTTCCCTGCAAATATCTGAAATTGAGGTCTACCTCTTTCTCCCTCGTTTTATTTTCGCATTTTATGAATTATTGGGGTATTTATTCTTTTGTGAACTATCGGGGTAATGCCCGACTGCCTGAGTGATGGAACTAACAAATTATGCTGAGGAGTAAACAATTTACAATCCCTAATCTTCCGGTTTCATTATAGTGGAATATTTAGGCGTGTGGAGATGTTTCTGAATTATATTTGAGACCAAAATGTAGGATGAATTGCAGCATTTGAAGACTGGCATTATGATTTTTTGCAAAGGCTAATGATGGATAGTGCTTTTACTTCTTTGACATGTAGTTAGGGTCTGGAGATAGTACGATTGTAGAGTAATTAGATTGTGTTAAGTGATTGGATCACTGAGTTCTTGTCATAACCATGGAATTATTAGCTCTCTGTGTTGTTTTGTATTATATGTTCGCTATAGTTGTGTTCTTGAATTAGTGTTTCAGAGGAATATGGGCTTTGCATTGTGATGCTCGAGCTTAAGCTCCCTCATATGACTGCCATTTAGTTATGATAGTCACCCATGTTTTCACTTATGATGGTAGGACTTATTTTGTCGTAAACAACTTTGGCGTTACTCTCAACAGATTAATCAGGTCTTGTTTGATTCAATATATATGATCATACTTTAGTTTTTTTATAGCTTTTACTTATGTAGGTCACCTTCGTTCTACCATCTTTCACTAAAGGAACCATACCCTCTTTCCTCTTGTAGGGAAAGACAAGACTAGATGAAGGGCAAGCTAGCACTGATGGAGAAACTCGGATTTTTTGGTTGAATTTTGTGAGTTTGGTCCTTCTAAATTAGTGGAGTGAAATAATTTGTTATAGACTGAGAAGATGAATCACTAGAGTATACGAATTGATCTCAAATGGCAATTATCAATTTTTCCTTGTTTAACACTGTGTCATGTAAAGATGTAGGTCAGGTCTTAATGATGTGGGTGTTCTTTAATAATTCAGTTACCTTTCTGTTCACAATGATTATATCTGATTCCTTCAAATAGGTGTTTCGAATCTTAAATATATAAAAGAGATCATTATATTGCTTGCATGAAATGTGGTTTATCTGCTAGCTAACTACATTCATGTGTATGGTACATTGAAACTAATGGATAAGTGAGATTTTGAGGTTTGCAATCGGGATCTCCGCTCACATCATCTTACATGAACAACACTACATTCATTAACAACTTACAAGGAGATAAAATAAATTTTACTTTCCAGGGATGTAGATCCTGTGTCTGTAGGTAGTTTTAGCATGTCAATACTCCAATGCTGGCTCCAAACATATGTCAACTTGAACTTGTTGATTGTTAATCTTTATTGCCATATGATATAAGAGTCACACTAATACGTAATATGCATTCAGATTGCAATGATGATGTATGATGCATATCAGACGGTCGTGCAAAGTATAATGAACTTGGGATTTGTGCATTGGTGATATGCTAAGGGTTTTCAAAGATATTCGGAGAAGCCAGAGCTATTTCATCCTTGTTACTACCTCCATTTCAGAAAGTTCTTTACGCTTAGGAAAATGTGTCCAAAGTATAAAAACTTCGACAGTAAATTCTCACCATTATATACATCAAAACGTTACTGGTAAGATCTTGTTAGATTGGTCTCGGTATATATTTTCATAATATCAAATTTTTATAATTTTTTCATACACAAAATTTGATATATAAGTAGTTAAATATTGCATTGGAGTCCGTGCAAATAGTAACCGTGAAGATCTTTTTGAAACGGAGGTAGTATCATCTTAAACTATAAACTAGATGGTTCTTGATTCAATCGTTAGTTTTGGAATATGTATCTCAGACTCTATTGCGCCCCCTTGTTAAAATTCAATCATTTCATTGTCCTTTGGTTATTGACTTATTGTGCTATTCTCTCATAGTACCAATATGCAGTTCTTCTGTTATGATTTCTGTGGCCGTTGTTATCTTTCTCTGGCCTTCTGTTATATATCTTGCTAGGGCCTTGGCTATTCGGATGATGACTATCTAAAAATAGCGAGCTTCCTGTAACTTGACAGAAATTATCAGTTTATTACAAGCTATTCTTCCTATATTACATAGTATTTTCCTCTGGTATCCCCTTTCTGGAAAGTTATTGTTTTCATGCCTTTTCTTGTACCTTCCACTTTTTCAATTTTGTTTCCTGAGAAGGGAAAATTAAGGCGCATTGTCCAAACATATTTGAGCAGGTTAAGCCTTTCCATGGTTACATTTAGGATGGCCGATGGGTTTCTTATACTTGGTATGAATGTATGATATTAAATCATGTTTTAGAATTCTAAAATCCTTGTTTTCTGTAAAATATGGTCATATACGAAGTAAATAGTAAGAAAACCATATGGTTTAAATATTGAGCCAGGAATTGTCACATGGCAGTCAAGCCAGTCATACAACCAACGTCATCTAGCTTACTATTATGCTTAAATAAATAGGAACTGGTAATGATGATGTTCATGTAGTATAAAAAGATAGATTTGGATGGATTATGTAAAATCAATCTCATATAGGCGTACTTTAAATTTCCTTATTACTTGATGATTGAAATTGTTGGATTGTTGAACTTGCTGGTGTTCTTGTCCAGCCGTGGCGTCCTGCAGTTTCTGTGTTTGCTGGTTAGTATGCAACTTGTTTAGTGTGCGGGTGTGTTGCGTGTTGGTGTGCAATTTGTTATGTGGTGTGCAGTCTGTTTTGCTGGTGTCCAGGTGCAGTCTGTTTTGTTGTTGTACAATACAGTGTGGATTCTGTTTCGTTGCACGCTGTTTTGCTGCAGTCTGTTTTTCTGTTGTACAATAGTGTGCAGTCTGTTTCTTAGTCTGTTTAGTTTGTTTTGAATAGGCTTACGAAACGGTCTTTGGATGATACAGAACTCAACCAAGTGAAGGCTGAAAGCAACCATGATATGAAGAAATCATTAACTTGGTGGGATCTTACTTGGTTCGGTATTGGTGCTGGTATCTTTGTACTTACTGGTCAAGAGGCTAATCAAGATGCTGGTCCTGCTGTTATTTTATCTTTTACTGTTTCCGGTGTCTCTGCTATGCTCTCTGTTTTATGTTACACCTAG CAACTTTGGCCCTATGAGATTGCTGCAATTAGGTTGAAACATTCACTCACCTTCTATTCTCGAATTAGGTTGTACGCAATTCACTCACCTTCAATTCTCACCCAATTATGCAGATTTAGATCGCATTCAAAAAAAAAAAAAAACCAGTGAAACCTATGTTTTGCGATTCTCCATAGGCAATTTCTTCCCCCTTCTACACAAATCTTACCCCCATTAACTCCCTTCTTCATCTTTGGTCTGCTCCTTCGCCGCGCGGCCATCGGAAAAGTTTCTTGCTCTCAACTCCGTGAACCCTGTTGTAGAAAATTGGAGGGAGAAAGATGGATTTATCTAGGCTTTCCCTGCAAATATCTGAAATTGAGGGAAAGACAAGACTAGATGAAGGGCAAGCTAGCACTGATGGAGAAACTCGGATTTTTTGGTTGAATTTTCCGTGGCGTCCTGCAGTTTCTGTGTTTGCTGGTTAGCTTACGAAACGGTCTTTGGATGATACAGAACTCAACCAAGTGAAGGCTGAAAGCAACCATGATATGAAGAAATCATTAACTTGGTGGGATCTTACTTGGTTCGGTATTGGTGCTGGTATCTTTGTACTTACTGGTCAAGAGGCTAATCAAGATGCTGGTCCTGCTGTTATTTTATCTTTTACTGTTTCCGGTGTCTCTGCTATGCTCTCTGTTTTATGTTACACCTAG ATGAAGAAATCATTAACTTGGTGGGATCTTACTTGGTTCGGTATTGGTGCTGGTATCTTTGTACTTACTGGTCAAGAGGCTAATCAAGATGCTGGTCCTGCTGTTATTTTATCTTTTACTGTTTCCGGTGTCTCTGCTATGCTCTCTGTTTTATGTTACACCTAG MKKSLTWWDLTWFGIGAGIFVLTGQEANQDAGPAVILSFTVSGVSAMLSVLCYT Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo15275.1 vs. NCBI nr
Match: gi|902171013|gb|KNA07936.1| (hypothetical protein SOVF_167250, partial [Spinacia oleracea]) HSP 1 Score: 105.1 bits (261), Expect = 3.800e-20 Identity = 53/58 (91.38%), Postives = 53/58 (91.38%), Query Frame = 1
BLAST of Spo15275.1 vs. NCBI nr
Match: gi|902188312|gb|KNA11106.1| (hypothetical protein SOVF_137950 isoform A, partial [Spinacia oleracea]) HSP 1 Score: 102.8 bits (255), Expect = 1.900e-19 Identity = 52/58 (89.66%), Postives = 52/58 (89.66%), Query Frame = 1
BLAST of Spo15275.1 vs. NCBI nr
Match: gi|902188313|gb|KNA11107.1| (hypothetical protein SOVF_137950 isoform B, partial [Spinacia oleracea]) HSP 1 Score: 102.8 bits (255), Expect = 1.900e-19 Identity = 52/58 (89.66%), Postives = 52/58 (89.66%), Query Frame = 1
BLAST of Spo15275.1 vs. NCBI nr
Match: gi|902228428|gb|KNA21095.1| (hypothetical protein SOVF_046440, partial [Spinacia oleracea]) HSP 1 Score: 101.3 bits (251), Expect = 5.500e-19 Identity = 51/58 (87.93%), Postives = 51/58 (87.93%), Query Frame = 1
BLAST of Spo15275.1 vs. NCBI nr
Match: gi|641856552|gb|KDO75318.1| (hypothetical protein CISIN_1g007398mg [Citrus sinensis]) HSP 1 Score: 94.7 bits (234), Expect = 5.100e-17 Identity = 46/58 (79.31%), Postives = 50/58 (86.21%), Query Frame = 1
BLAST of Spo15275.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QMX3_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_167250 PE=4 SV=1) HSP 1 Score: 105.1 bits (261), Expect = 2.600e-20 Identity = 53/58 (91.38%), Postives = 53/58 (91.38%), Query Frame = 1
BLAST of Spo15275.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QX85_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_137950 PE=4 SV=1) HSP 1 Score: 102.8 bits (255), Expect = 1.300e-19 Identity = 52/58 (89.66%), Postives = 52/58 (89.66%), Query Frame = 1
BLAST of Spo15275.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QV22_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_137950 PE=4 SV=1) HSP 1 Score: 102.8 bits (255), Expect = 1.300e-19 Identity = 52/58 (89.66%), Postives = 52/58 (89.66%), Query Frame = 1
BLAST of Spo15275.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RNK4_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_046440 PE=4 SV=1) HSP 1 Score: 101.3 bits (251), Expect = 3.800e-19 Identity = 51/58 (87.93%), Postives = 51/58 (87.93%), Query Frame = 1
BLAST of Spo15275.1 vs. UniProtKB/TrEMBL
Match: A0A067G6S0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g007398mg PE=4 SV=1) HSP 1 Score: 94.7 bits (234), Expect = 3.600e-17 Identity = 46/58 (79.31%), Postives = 50/58 (86.21%), Query Frame = 1
BLAST of Spo15275.1 vs. ExPASy Swiss-Prot
Match: CAAT5_ARATH (Cationic amino acid transporter 5 OS=Arabidopsis thaliana GN=CAT5 PE=1 SV=1) HSP 1 Score: 90.1 bits (222), Expect = 7.900e-18 Identity = 42/58 (72.41%), Postives = 49/58 (84.48%), Query Frame = 1
BLAST of Spo15275.1 vs. ExPASy Swiss-Prot
Match: CAAT1_ARATH (Cationic amino acid transporter 1 OS=Arabidopsis thaliana GN=CAT1 PE=1 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 3.900e-17 Identity = 43/58 (74.14%), Postives = 47/58 (81.03%), Query Frame = 1
BLAST of Spo15275.1 vs. ExPASy Swiss-Prot
Match: CAAT8_ARATH (Cationic amino acid transporter 8, vacuolar OS=Arabidopsis thaliana GN=CAT8 PE=2 SV=1) HSP 1 Score: 79.0 bits (193), Expect = 1.800e-14 Identity = 37/57 (64.91%), Postives = 47/57 (82.46%), Query Frame = 1
BLAST of Spo15275.1 vs. ExPASy Swiss-Prot
Match: CAAT6_ARATH (Cationic amino acid transporter 6, chloroplastic OS=Arabidopsis thaliana GN=CAT6 PE=2 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 5.100e-9 Identity = 26/58 (44.83%), Postives = 42/58 (72.41%), Query Frame = 1
BLAST of Spo15275.1 vs. ExPASy Swiss-Prot
Match: CAAT7_ARATH (Cationic amino acid transporter 7, chloroplastic OS=Arabidopsis thaliana GN=CAT7 PE=3 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 5.700e-8 Identity = 25/58 (43.10%), Postives = 41/58 (70.69%), Query Frame = 1
BLAST of Spo15275.1 vs. TAIR (Arabidopsis)
Match: AT2G34960.1 (cationic amino acid transporter 5) HSP 1 Score: 90.1 bits (222), Expect = 4.500e-19 Identity = 42/58 (72.41%), Postives = 49/58 (84.48%), Query Frame = 1
BLAST of Spo15275.1 vs. TAIR (Arabidopsis)
Match: AT4G21120.1 (amino acid transporter 1) HSP 1 Score: 87.8 bits (216), Expect = 2.200e-18 Identity = 43/58 (74.14%), Postives = 47/58 (81.03%), Query Frame = 1
BLAST of Spo15275.1 vs. TAIR (Arabidopsis)
Match: AT1G17120.1 (cationic amino acid transporter 8) HSP 1 Score: 79.0 bits (193), Expect = 1.000e-15 Identity = 37/57 (64.91%), Postives = 47/57 (82.46%), Query Frame = 1
BLAST of Spo15275.1 vs. TAIR (Arabidopsis)
Match: AT5G04770.1 (cationic amino acid transporter 6) HSP 1 Score: 60.8 bits (146), Expect = 2.900e-10 Identity = 26/58 (44.83%), Postives = 42/58 (72.41%), Query Frame = 1
BLAST of Spo15275.1 vs. TAIR (Arabidopsis)
Match: AT3G10600.1 (cationic amino acid transporter 7) HSP 1 Score: 57.4 bits (137), Expect = 3.200e-9 Identity = 25/58 (43.10%), Postives = 41/58 (70.69%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo15275.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo15275.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo15275.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo15275.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29 Position : 0 Zoom : x 1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
|