Spo15388 (gene)

Overview
NameSpo15388
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr6 : 10274625 .. 10274873 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATGACCAAGTGTGTACTAGTACTACTTCGTGCTGGCACCAGCCTTGGCAGGATGCAACCATACTATCGCCACCCTCCTACGTTGCCGCGGCGGCCACCCTTTCGAGCTCCTCCGCCACCTCGAGTGTTATTGATACCACCAGCAACGGCGAGGTTAAGAGGGCTAGGGCGGCCCCACCGGCGGCTCTTAGAGATAAGGACTCTTTCCGGACTGCTATGTTCTTGAGCTGCTGGACGTGCTCCTAG

mRNA sequence

ATGTATGACCAAGTGTGTACTAGTACTACTTCGTGCTGGCACCAGCCTTGGCAGGATGCAACCATACTATCGCCACCCTCCTACGTTGCCGCGGCGGCCACCCTTTCGAGCTCCTCCGCCACCTCGAGTGTTATTGATACCACCAGCAACGGCGAGGTTAAGAGGGCTAGGGCGGCCCCACCGGCGGCTCTTAGAGATAAGGACTCTTTCCGGACTGCTATGTTCTTGAGCTGCTGGACGTGCTCCTAG

Coding sequence (CDS)

ATGTATGACCAAGTGTGTACTAGTACTACTTCGTGCTGGCACCAGCCTTGGCAGGATGCAACCATACTATCGCCACCCTCCTACGTTGCCGCGGCGGCCACCCTTTCGAGCTCCTCCGCCACCTCGAGTGTTATTGATACCACCAGCAACGGCGAGGTTAAGAGGGCTAGGGCGGCCCCACCGGCGGCTCTTAGAGATAAGGACTCTTTCCGGACTGCTATGTTCTTGAGCTGCTGGACGTGCTCCTAG

Protein sequence

MYDQVCTSTTSCWHQPWQDATILSPPSYVAAAATLSSSSATSSVIDTTSNGEVKRARAAPPAALRDKDSFRTAMFLSCWTCS
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo15388.1Spo15388.1mRNA


Homology
[Close]
BLAST of Spo15388.1 vs. NCBI nr
Match: gi|902168433|gb|KNA07502.1| (hypothetical protein SOVF_171240 [Spinacia oleracea])

HSP 1 Score: 164.9 bits (416), Expect = 6.100e-38
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1 

		  

Query: 1  MYDQVCTSTTSCWHQPWQDATILSPPSYVAAAATLSSSSATSSVIDTTSNGEVKRARAAP 60
          MYDQVCTSTTSCWHQPWQDATILSPPSYVAAAATLSSSSATSSVIDTTSNGEVKRARAAP
Sbjct: 1  MYDQVCTSTTSCWHQPWQDATILSPPSYVAAAATLSSSSATSSVIDTTSNGEVKRARAAP 60

Query: 61 PAALRDKDSFRTAMFLSCWTCS 83
          PAALRDKDSFRTAMFLSCWTCS
Sbjct: 61 PAALRDKDSFRTAMFLSCWTCS 82
[Close]
BLAST of Spo15388.1 vs. NCBI nr
Match: gi|870852561|gb|KMT04476.1| (hypothetical protein BVRB_8g181450 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 67.4 bits (163), Expect = 1.300e-8
Identity = 42/82 (51.22%), Postives = 52/82 (63.41%), Query Frame = 1 

		  

Query: 1  MYDQVCTSTTSCWHQPWQDATILSPPSYVAAAATLSSSSATSSVIDTTSNGEVKRARAAP 60
          M++Q   S++S W +PWQ AT  S       A T  SS AT S+ DT + GEV   RA  
Sbjct: 1  MHEQA--SSSSFW-EPWQRATTSSTSVATTTATTTPSSFATPSITDTANKGEVA-PRAGC 60

Query: 61 PAALRDKDSFRTAMFLSCWTCS 83
           A +RD+D+FRTAMFLSCWTCS
Sbjct: 61 KAVVRDQDAFRTAMFLSCWTCS 78
[Close]
BLAST of Spo15388.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QJT1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_171240 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 4.300e-38
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1 

		  

Query: 1  MYDQVCTSTTSCWHQPWQDATILSPPSYVAAAATLSSSSATSSVIDTTSNGEVKRARAAP 60
          MYDQVCTSTTSCWHQPWQDATILSPPSYVAAAATLSSSSATSSVIDTTSNGEVKRARAAP
Sbjct: 1  MYDQVCTSTTSCWHQPWQDATILSPPSYVAAAATLSSSSATSSVIDTTSNGEVKRARAAP 60

Query: 61 PAALRDKDSFRTAMFLSCWTCS 83
          PAALRDKDSFRTAMFLSCWTCS
Sbjct: 61 PAALRDKDSFRTAMFLSCWTCS 82
[Close]
BLAST of Spo15388.1 vs. UniProtKB/TrEMBL
Match: A0A0J8ENB0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g181450 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 9.300e-9
Identity = 42/82 (51.22%), Postives = 52/82 (63.41%), Query Frame = 1 

		  

Query: 1  MYDQVCTSTTSCWHQPWQDATILSPPSYVAAAATLSSSSATSSVIDTTSNGEVKRARAAP 60
          M++Q   S++S W +PWQ AT  S       A T  SS AT S+ DT + GEV   RA  
Sbjct: 1  MHEQA--SSSSFW-EPWQRATTSSTSVATTTATTTPSSFATPSITDTANKGEVA-PRAGC 60

Query: 61 PAALRDKDSFRTAMFLSCWTCS 83
           A +RD+D+FRTAMFLSCWTCS
Sbjct: 61 KAVVRDQDAFRTAMFLSCWTCS 78
The following BLAST results are available for this feature:
BLAST of Spo15388.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2
Match NameE-valueIdentityDescription
gi|902168433|gb|KNA07502.1|6.1e-38100.hypothetical protein SOVF_1712... [more]
gi|870852561|gb|KMT04476.1|1.3e-851.2hypothetical protein BVRB_8g18... [more]
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BLAST of Spo15388.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0K9QJT1_SPIOL4.3e-38100.Uncharacterized protein OS=Spi... [more]
A0A0J8ENB0_BETVU9.3e-951.2Uncharacterized protein OS=Bet... [more]
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BLAST of Spo15388.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo15388.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0006265 DNA topological change
biological_process GO:0006857 oligopeptide transport
biological_process GO:0009409 response to cold
biological_process GO:0009737 response to abscisic acid
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:0042742 defense response to bacterium
biological_process GO:0006012 galactose metabolic process
biological_process GO:0009814 defense response, incompatible interaction
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0061077 chaperone-mediated protein folding
biological_process GO:0016311 dephosphorylation
biological_process GO:0009718 anthocyanin-containing compound biosynthetic process
biological_process GO:0008152 metabolic process
biological_process GO:0006569 tryptophan catabolic process
biological_process GO:0034484 raffinose catabolic process
biological_process GO:0097503 sialylation
biological_process GO:0006486 protein glycosylation
biological_process GO:0009860 pollen tube growth
biological_process GO:0006855 drug transmembrane transport
biological_process GO:0031047 gene silencing by RNA
biological_process GO:0009846 pollen germination
biological_process GO:0007020 microtubule nucleation
biological_process GO:0033358 UDP-L-arabinose biosynthetic process
biological_process GO:0008299 isoprenoid biosynthetic process
biological_process GO:0071555 cell wall organization
biological_process GO:0045227 capsule polysaccharide biosynthetic process
biological_process GO:0009658 chloroplast organization
biological_process GO:0006558 L-phenylalanine metabolic process
biological_process GO:0006950 response to stress
biological_process GO:0009697 salicylic acid biosynthetic process
biological_process GO:0009611 response to wounding
biological_process GO:0048573 photoperiodism, flowering
biological_process GO:0051726 regulation of cell cycle
biological_process GO:0006468 protein phosphorylation
biological_process GO:0045727 positive regulation of translation
biological_process GO:0009649 entrainment of circadian clock
biological_process GO:0050790 regulation of catalytic activity
biological_process GO:0006508 proteolysis
biological_process GO:0042753 positive regulation of circadian rhythm
biological_process GO:0009414 response to water deprivation
biological_process GO:0009585 red, far-red light phototransduction
biological_process GO:0009909 regulation of flower development
biological_process GO:0010114 response to red light
biological_process GO:0016441 posttranscriptional gene silencing
biological_process GO:0010497 plasmodesmata-mediated intercellular transport
biological_process GO:0016556 mRNA modification
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0000160 phosphorelay signal transduction system
biological_process GO:0009684 indoleacetic acid biosynthetic process
biological_process GO:0031408 oxylipin biosynthetic process
biological_process GO:0006812 cation transport
biological_process GO:0015931 nucleobase-containing compound transport
biological_process GO:0009723 response to ethylene
biological_process GO:0009738 abscisic acid-activated signaling pathway
biological_process GO:0042538 hyperosmotic salinity response
biological_process GO:0009733 response to auxin
biological_process GO:0009695 jasmonic acid biosynthetic process
biological_process GO:0009867 jasmonic acid mediated signaling pathway
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0000785 chromatin
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0005634 nucleus
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0005739 mitochondrion
cellular_component GO:1990904 ribonucleoprotein complex
cellular_component GO:0010319 stromule
cellular_component GO:0005768 endosome
cellular_component GO:0005802 trans-Golgi network
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0005694 chromosome
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005777 peroxisome
cellular_component GO:0009506 plasmodesma
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0010494 cytoplasmic stress granule
cellular_component GO:0017177 glucosidase II complex
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005622 intracellular
cellular_component GO:0009507 chloroplast
cellular_component GO:0016020 membrane
molecular_function GO:0004558 alpha-1,4-glucosidase activity
molecular_function GO:0008422 beta-glucosidase activity
molecular_function GO:0030599 pectinesterase activity
molecular_function GO:0004857 enzyme inhibitor activity
molecular_function GO:0005215 transporter activity
molecular_function GO:0010181 FMN binding
molecular_function GO:0004185 serine-type carboxypeptidase activity
molecular_function GO:0016629 12-oxophytodienoate reductase activity
molecular_function GO:0044183 protein binding involved in protein folding
molecular_function GO:0015391 nucleobase:cation symporter activity
molecular_function GO:0004693 cyclin-dependent protein serine/threonine kinase activity
molecular_function GO:0008266 poly(U) RNA binding
molecular_function GO:0004197 cysteine-type endopeptidase activity
molecular_function GO:0003724 RNA helicase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008026 ATP-dependent helicase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0016301 kinase activity
molecular_function GO:0032450 maltose alpha-glucosidase activity
molecular_function GO:0030246 carbohydrate binding
molecular_function GO:0015238 drug transmembrane transporter activity
molecular_function GO:0003682 chromatin binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0004556 alpha-amylase activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0050662 coenzyme binding
molecular_function GO:0050373 UDP-arabinose 4-epimerase activity
molecular_function GO:0003978 UDP-glucose 4-epimerase activity
molecular_function GO:0008236 serine-type peptidase activity
molecular_function GO:0015297 antiporter activity
molecular_function GO:0047980 hippurate hydrolase activity
molecular_function GO:0016757 transferase activity, transferring glycosyl groups
molecular_function GO:0052692 raffinose alpha-galactosidase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0005515 protein binding
molecular_function GO:0008373 sialyltransferase activity
molecular_function GO:0016887 ATPase activity
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity
molecular_function GO:0008253 5'-nucleotidase activity
molecular_function GO:0042803 protein homodimerization activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo268500.79Barchart | Table
Spo052300.78Barchart | Table
Spo189070.77Barchart | Table
Spo048280.76Barchart | Table
Spo215420.76Barchart | Table
Spo245030.76Barchart | Table
Spo253510.76Barchart | Table
Spo176280.76Barchart | Table
Spo068290.76Barchart | Table
Spo037390.75Barchart | Table
Spo087850.75Barchart | Table
Spo236900.75Barchart | Table
Spo268510.75Barchart | Table
Spo168170.74Barchart | Table
Spo163210.74Barchart | Table
Spo031050.74Barchart | Table
Spo213320.74Barchart | Table
Spo244400.74Barchart | Table
Spo200530.74Barchart | Table
Spo162090.73Barchart | Table
Spo137800.73Barchart | Table
Spo191950.73Barchart | Table
Spo013080.73Barchart | Table
Spo019330.73Barchart | Table
Spo265440.73Barchart | Table
Spo197730.73Barchart | Table
Spo146970.73Barchart | Table
Spo127420.72Barchart | Table
Spo212890.72Barchart | Table
Spo223230.72Barchart | Table
Spo266610.72Barchart | Table
Spo107520.72Barchart | Table
Spo188400.72Barchart | Table
Spo257480.71Barchart | Table
Spo258730.71Barchart | Table
Spo255930.71Barchart | Table
Spo191960.71Barchart | Table
Spo099230.71Barchart | Table
Spo090930.70Barchart | Table
Spo006370.70Barchart | Table
Spo227120.70Barchart | Table
Spo081240.70Barchart | Table
Spo079280.70Barchart | Table
Spo003580.70Barchart | Table
Spo044300.70Barchart | Table
Spo218110.70Barchart | Table
Spo068810.69Barchart | Table
Spo018680.69Barchart | Table
Spo105860.69Barchart | Table
Spo057510.69Barchart | Table
Spo250990.69Barchart | Table
Spo168730.69Barchart | Table
Spo013140.69Barchart | Table
Spo243880.69Barchart | Table
Spo022390.69Barchart | Table
Spo226750.69Barchart | Table
Spo107980.69Barchart | Table
Spo096190.69Barchart | Table
Spo013840.69Barchart | Table
Spo203260.68Barchart | Table
Spo165680.68Barchart | Table
Spo195000.68Barchart | Table
Spo055690.68Barchart | Table
Spo151450.68Barchart | Table
Spo261950.68Barchart | Table
Spo050070.68Barchart | Table
Spo092450.68Barchart | Table
Spo092330.68Barchart | Table
Spo209660.68Barchart | Table
Spo060170.67Barchart | Table
Spo011100.67Barchart | Table
Spo038570.67Barchart | Table
Spo061150.67Barchart | Table
Spo102690.67Barchart | Table
Spo141300.67Barchart | Table
Spo183200.67Barchart | Table
Spo197520.67Barchart | Table
Spo212800.67Barchart | Table
Spo244750.67Barchart | Table
Spo087650.66Barchart | Table
Spo085990.66Barchart | Table
Spo058620.66Barchart | Table
Spo053110.66Barchart | Table
Spo048510.66Barchart | Table
Spo035770.66Barchart | Table
Spo168840.66Barchart | Table
Spo246350.66Barchart | Table
Spo189420.66Barchart | Table
Spo183860.66Barchart | Table
Spo271590.66Barchart | Table
Spo207870.65Barchart | Table
Spo168920.65Barchart | Table
Spo244630.65Barchart | Table
Spo247860.65Barchart | Table
Spo166930.65Barchart | Table
Spo154020.65Barchart | Table
Spo267270.65Barchart | Table
Spo010110.65Barchart | Table
Spo007350.65Barchart | Table
Spo229930.65Barchart | Table