Spo15389 (gene) | SpinachBase

Overview


Name	Spo15389
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr6 : 10352583 .. 10353992 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCTTGAGGCACTTAGGGAGGGTGTTGTACCAAGCAACAGGAAATATTAGGGTGATTTTGCAAGGCACCAAACTAGACCAAGCTTCTTCTAAATGTGACCCTACCTTCATCATGTCTTTCAAGAACTCCTCCGGCTTTAACCGCCAAACGAGGCGGCTGGCCACCGAGGCTACGGATGCTACCACTACTACCACCTCCGCGGATAAGCTCCGGCTCGCCGAGGAGTCTCTCCGAACTGTCATGTATTTGAGTTGTTGGGGTCCATCTTGAATTTCAATAATTGTTCGTGTAAATTATTGATTAAGTTGAGTATTTTAATTTTAGTAAATATATGTACACGTATTAATTATTACTTCTAGCCTTGTAAATATGTAAATAAATTTGATTGAGTTTTACTAGATTCGTCTCAATAAATAAATATAATTTTTGTTTATTTACAATAAGATATTGAAAAATAGCAAGAAATGCTCAAAGTAAAAGAGGAAACTCAACATTATAGGAGACCTACAAGAAAAATCAACATTAAATGTCGTATACATGCATCATGCATGCCTTTATAACAATAACAAACTACTCCCTTCGTTCCGGAATACTCGCAACGGTTTCACTGGACACGCTTGCCAATGCACAACTTTGACCATCAATATTTTCAATTATATATTATAAAAACTTATAAAATATTTATATTTTGAAAATATATATTAAGATGAAGCCAACAATATATTATATGTTAACACTCATTTTCATATACTATAAATAAAATAGGGTCAAAGTAAATCATGTGAACAGTGTAAAAAGTCAAACCGTTACGAGTATTCCGAGACGGAGGGAATAGTTTATGACCGAAAAATTACAAAGACATTTACTCCGTAAATTATAAGGTTATTTTGGGATTGTTTTTGTCTTTGGTCATCTTTGGTAGACCCATTGCAAAAATTAAAAAACTATATATCCGGAGGGTGTATTTGAGTCTTGAGATATAGAAGTATCCTCTATGACGTTTCAGTTAGATAAGGGGCATTTAAGGTTTTATTATGTTCGACTTATTTTGACTTATTTCAGACAAAATAAGTTCAGATAACTTCAGATAATATAAGTTCAGTCAAAATAATTCTAACAGAACGGAGCCTAAGTGAGAAAAAGAGAAGAAAAATCATCATTTTAACTTTTTTTAATAGGTAACACAATTAAACTTACGATAATTAATATTAAATTTACCCGGAAAAAAAAAAGGAGTAATAATGCTACCCAATCTCATCTATATTGCACTATAAGTACCAATTTTGTTTGTTACACTTACATGTGAAGCAAATTCCAAAATACATCATCCACATTATGGCCTATCTTAATAACTTTCATTCCTACCACACATAGCAAAGCCTTAAACCAACCCTCTACCTTCTCTAG

mRNA sequence

ATGAGCTTGAGGCACTTAGGGAGGGTGTTGTACCAAGCAACAGGAAATATTAGGGTGATTTTGCAAGGCACCAAACTAGACCAAGCTTCTTCTAAATGTGACCCTACCTTCATCATGTCTTTCAAGAACTCCTCCGGCTTTAACCGCCAAACGAGGCGGCTGGCCACCGAGGCTACGGATGCTACCACTACTACCACCTCCGCGGATAAGCTCCGGCTCGCCGAGGAGTCTCTCCGAACTCAAAGCCTTAAACCAACCCTCTACCTTCTCTAG

Coding sequence (CDS)

ATGAGCTTGAGGCACTTAGGGAGGGTGTTGTACCAAGCAACAGGAAATATTAGGGTGATTTTGCAAGGCACCAAACTAGACCAAGCTTCTTCTAAATGTGACCCTACCTTCATCATGTCTTTCAAGAACTCCTCCGGCTTTAACCGCCAAACGAGGCGGCTGGCCACCGAGGCTACGGATGCTACCACTACTACCACCTCCGCGGATAAGCTCCGGCTCGCCGAGGAGTCTCTCCGAACTCAAAGCCTTAAACCAACCCTCTACCTTCTCTAG

Protein sequence

MSLRHLGRVLYQATGNIRVILQGTKLDQASSKCDPTFIMSFKNSSGFNRQTRRLATEATDATTTTTSADKLRLAEESLRTQSLKPTLYLL

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo15389.1	Spo15389.1	mRNA

Homology

The following BLAST results are available for this feature:

BLAST of Spo15389.1 vs. NCBI nr
BLAST of Spo15389.1 vs. UniProtKB/TrEMBL
BLAST of Spo15389.1 vs. ExPASy Swiss-Prot
BLAST of Spo15389.1 vs. TAIR (Arabidopsis)

BLAST of Spo15389.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo15389.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo15389.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo15389.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016556	mRNA modification
biological_process	GO:0006457	protein folding
biological_process	GO:0009867	jasmonic acid mediated signaling pathway
biological_process	GO:0009231	riboflavin biosynthetic process
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0016099	monoterpenoid biosynthetic process
biological_process	GO:0000023	maltose metabolic process
biological_process	GO:0000413	protein peptidyl-prolyl isomerization
biological_process	GO:0035265	organ growth
biological_process	GO:0019252	starch biosynthetic process
biological_process	GO:0051604	protein maturation
biological_process	GO:0008152	metabolic process
biological_process	GO:0006470	protein dephosphorylation
biological_process	GO:0032984	protein-containing complex disassembly
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0006364	rRNA processing
biological_process	GO:0006631	fatty acid metabolic process
biological_process	GO:0006007	glucose catabolic process
biological_process	GO:0006662	glycerol ether metabolic process
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0009790	embryo development
biological_process	GO:0016126	sterol biosynthetic process
biological_process	GO:0015994	chlorophyll metabolic process
biological_process	GO:0006397	mRNA processing
biological_process	GO:0006399	tRNA metabolic process
biological_process	GO:0034051	negative regulation of plant-type hypersensitive response
biological_process	GO:0045036	protein targeting to chloroplast
biological_process	GO:0009755	hormone-mediated signaling pathway
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0042793	plastid transcription
biological_process	GO:0008654	phospholipid biosynthetic process
biological_process	GO:0009657	plastid organization
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009813	flavonoid biosynthetic process
cellular_component	GO:0008287	protein serine/threonine phosphatase complex
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0010007	magnesium chelatase complex
cellular_component	GO:0009536	plastid
cellular_component	GO:0009295	nucleoid
cellular_component	GO:0009349	riboflavin synthase complex
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:1990904	ribonucleoprotein complex
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009543	chloroplast thylakoid lumen
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009570	chloroplast stroma
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0015035	protein disulfide oxidoreductase activity
molecular_function	GO:0047134	protein-disulfide reductase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016851	magnesium chelatase activity
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0005504	fatty acid binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0045430	chalcone isomerase activity
molecular_function	GO:0016709	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0020037	heme binding
molecular_function	GO:0000906	6,7-dimethyl-8-ribityllumazine synthase activity
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0004722	protein serine/threonine phosphatase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003755	peptidyl-prolyl cis-trans isomerase activity
molecular_function	GO:0008253	5'-nucleotidase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0046422	violaxanthin de-epoxidase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo23249	0.80	Barchart \| Table
Spo09487	0.78	Barchart \| Table
Spo13575	0.78	Barchart \| Table
Spo26975	0.75	Barchart \| Table
Spo18000	0.75	Barchart \| Table
Spo15390	0.74	Barchart \| Table
Spo09384	0.74	Barchart \| Table
Spo00214	0.74	Barchart \| Table
Spo13451	0.73	Barchart \| Table
Spo04377	0.73	Barchart \| Table
Spo05084	0.73	Barchart \| Table
Spo24054	0.72	Barchart \| Table
Spo23352	0.72	Barchart \| Table
Spo02751	0.72	Barchart \| Table
Spo11478	0.71	Barchart \| Table
Spo03903	0.71	Barchart \| Table
Spo25395	0.70	Barchart \| Table
Spo02396	0.70	Barchart \| Table
Spo05078	0.70	Barchart \| Table
Spo05233	0.70	Barchart \| Table
Spo17668	0.70	Barchart \| Table
Spo19288	0.70	Barchart \| Table
Spo26644	0.70	Barchart \| Table
Spo17437	0.69	Barchart \| Table
Spo25817	0.69	Barchart \| Table
Spo07806	0.69	Barchart \| Table
Spo18695	0.69	Barchart \| Table
Spo10987	0.69	Barchart \| Table
Spo01496	0.69	Barchart \| Table
Spo10133	0.68	Barchart \| Table
Spo06885	0.68	Barchart \| Table
Spo03785	0.68	Barchart \| Table
Spo15793	0.68	Barchart \| Table
Spo09340	0.67	Barchart \| Table
Spo14742	0.67	Barchart \| Table
Spo05816	0.67	Barchart \| Table
Spo21808	0.67	Barchart \| Table
Spo22999	0.67	Barchart \| Table
Spo24805	0.67	Barchart \| Table
Spo25773	0.67	Barchart \| Table
Spo12875	0.67	Barchart \| Table
Spo00600	0.66	Barchart \| Table
Spo25783	0.66	Barchart \| Table
Spo18336	0.66	Barchart \| Table
Spo08824	0.65	Barchart \| Table
Spo03139	0.65	Barchart \| Table
Spo01928	0.65	Barchart \| Table