Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGAACTTACTTAGACCCTGCAAATACTCTTATTACAATACTCATCATCATCATTCGATCTTTTACAACTCCAAATTTGCAATAGGAAAGATAAACAAATTTAGTTTTTATAAGCCAAAAGGCGCTACAAATAATGCTAAAAATGTTCTTACAGTACAAGTGAGAGCATACAATTCCAACGAAGAAGCCGCCGTCAGAAAAGATGAAGAAAGGGTTGAAAAGAAAAGCTTTCTCTCTTTAGAAGAAGCTGGTTTGGTGGAGATCTCTGGTTTAAGTATTCATGAACGTTTTCTTTGCAGATTAACGGTACGTCTTCTTTTTCTCGTACGAGTAATAAGTACGGACTGCGAAATATTCAGTAAATTGTACTCCCTCCGTTTCTTTTTGTTTTTTACGTTTTTCTTTTTGGGTATTTTAAAATGTTCTTTCAATTCCTTTTATATTATCACATAAATGACTTAGTATTCTATCAAAATTTGTGTCCAATTATTATTTTAACCAATTAAATTCATTGGGTCATTTAATCTCTCACACTTTTCAATTAGGACATTAAATTTTTCTCATTTCCCAATATCAGAATTTTGATAAAAGTGAAAACATTATAAATAAACGTAATTTATCTTGTTTAAATAAAAAAATTGAGGAACCTCGACGCAAATTAATTAATCGTTAAAACGCGTGAAAAATACCAAACGTAAAGAACAAAAATAGACGGAGGGAGTACATCATAAACACGAACTTAGTTAGAAACTTAGGTGATGGTTGGTTGACATGAAATAAAATGAGAATTATGATTTCCTAGGAAGTGAAAGATTGTAGGGTTGTTTGTTTGACAAAAACATGGGAAGTCACACTTCCTACAAAGTAGAGGGAGTTGCTTACCTAGGTTCCCCTAGGTAAGTGGAACTTCCCATGGAAATTTATTTCTCATGTTTAACCAAACAATATCATCTACTTCCTAGGAAATGCTAATACATGAGAAAAACTTCTTTCTCAAAAATTCTACTTCCCACGTCAACCAAACTAGCCCTTAGAACTATTTAATTTGATTAATCGGTAAAAAAGTTATTGTAAATAGGAAATTTTTGTCAAATGTAACTTTAAGTTACATTGTCACTTTGTGGTTTACGACTCTAAACTCTAAATTTTTTTTTTTGCAACTTGAAAAGTCACGTACCCTCCATCTATATTACTCCCTCCGTCTCTTTTTGTTTTTTTTACGTTTGGTATTTTGCACACGTTTTAAAACTAGTTAATGTGCATTGAGATTCTCTATTTTGTTTAATTTAAACAAGACAAATTACATTTATTTTTAATGTTTTCACTTTTATCAAAATTATGATATTGGGAAAAAGAGAAAAATTTAATGTTTTAATGGAAAAGTGTGAGATATTAAATGATCCAATGAATTTAATTGGTAAAAAAAAATAATTGGACAACAAATTTTGATAGAATACTAGAGTATTTATGTGATAATATAAACGGAAATGTAAAGAACATTTTTGGACACCAAAAAAGGAAAACGTAAATAACAAAAAGAGACGGAGGAAGTAATATATGGAAAGGTGTTGCGAATAAAGTTTATGTGCCACGTAGAACTCTCTTGTTTACGCCACGTCATCCACTCACCAAAGTTATGTGATGTTATTGACAACAAAAAATCAATAAAATAACTCTATCTTAATTAACCAGCCACTAATTGTTGTTTATACACGCACATTAATTTATAAATGCATGTTAACATAAAGTCTAAAACAACTAAATCTTTATACGGAGTATTACATTTTTATTTTTTATGGACTATCTATATAATTAAAGCAGAGTGATGGTTGATGAGAGGTGAGCAAATCCCCAATACTCTCTTCTAACATATGCCACATCACTGGCCACGTCATACCCACTCAATAGGTAACTACTCCCTCTGTTATCGAATATTAATCCCATTTCGAATCTTGACACTATTCACAATTGAAGAGAATCTTCTAATTTCTTTCCAATACGTACTTCAAAAAATATTCATGATCTTATTTTGTTCGTCTTAATTTGTAGTATAACAATATCAAATTTTTATATTTTTTTGACATACGTATTTGGAGATATTTGTGTTTAAATATTGAGTTGAAACAAGTTGAAAAGTCAAAACATGACTAATATTCACAACTTTAATGCTTCAATCAAGCACTAATCAAGCAAGAAAAAAAAGGAGAATTCAAACTCGCAATAAAAGGAAAAATAACCATTTACAAAAAAGGAAATAGCAAATTTTGTATAATGGAATATAAATACAAATAAATAAGGAAAAAAAACATGTTGTATATCTTTAAAATGGAAATTTGAATAACATAAATATAATGACTAACTATTTCAAAACAAATCTTCAAAAATTATGAAATAAATTGAAAAATAATTTTAATCAATCTAACAAATACAGAAAACGTCTATTAATTTTGCATGTGATGTATATTTAATCAGTTTAATAAAGAAAAAAAGTAGGTACTTCAGTTAAATGGTTAAACCATACCATTTATAACTTACGGTACATTATTATAATAATTAATTGACATTTTACCTTAGGCATCTACCAACATTTCAATTGTCTAACATCATTAAAAAAAAAAAAAATCTCATATAGACCGACATAGCTATATCCCGATTTATTAATTTCATAACTACTCTCTATTTGTGTTATTGCCATAATAATTTACAGAATACTAATTTTAAATCAAATGCACTATTTTATTTACTTTCTAATTTATAGAAATCCCATGCATCGGCACGGGCCTATACTAGTATTGGAATAAATAACAATTAAAACATTAGAAAAACCATGAATTAAACATGATATCATAAGTCTCATAAGCATAAACTATATAAATGTCCTGCATGTATGTAATTTGGTGTTTATTAATTTAATTCACTTAGTTCCTTTAGAAAATAAATTAAACGAATTGTAAGATGATCTAATTGAAAAATTATTTCGCATGATAAATGACTACATGTATTTTTATACATGTAGTACATAAAATTATTTTTACTTTTATGTACTATATACATGTATTTTGGTCAAATATATATTGATCTGACGAAAAATCTAAAATTTTAATTATTTAAAGTAGCAATTGGGGTATCGCTCGAACCACACACTAGTTTAAAACTAACAAAAGGTCTTGCGCGCACAAGGTGTACAATAACTTTATCGTACACCAAAATAACTTTTACCTAGTTTTTTGTAACTTTTACTATGTTTTGGTTAACTTTTATATTATGAAACTTGTTTTGATAGATTAACATTTTAAAAGGTTAAATGATTAATTTTTATACATTATTAATGATTTTGAAGAATATTTTTTATTAAAATGAAAAAAGTTTATCAAGAAAAAATAGATAACTTTTACATATATAAGGGTAACTTTAGTGTATTTTGAGTCAACTTTTACTTTGGTGTACAATATTTATTGTATACCTCTTTTAAATAAGAATTTGTGTAAAACTAAAACTTAATCAGCCGGATTCTTGCAAACTAGGACTGAAAGTAAGGCCATTAAACTATAATTATGAGTCGGATTCCGACCAACGAAAACCAAAAGTGATGTCATCATTGATTTCCAACTCATTATTAATGTGATTAAAATGCTTTAAAAATAAAATAAAAACCAATTAAATTGATTCCTACAAACCTAAAATCGGTGGTTTTTTATTATTATTAAAGTATTTTATTATATTAATAATGAGTTACAAATTATTAATGACATTATTTTCATCCGTTTGCCGGAATGTGATCCGAGATTGTAATTTTAATATTAGATGACCTTTTAGGTTGTAATTTACAAAAATATTAGTTTGAGGTTGTAACCCATAAAATCACAATTTTTTCATTGTAAACATATAGATACATAGGTAAAGAGGATTTTCCCTTCATTTCAGGCTTAACTTGACTCCAACCTAAATTAGTCAAAGCTTTTCAGAAAATGGATAGGAGACTAATTGGATATTATTTGGCAGATATCGTCTTTGAATCTACTGAGAGTGATAGCAGAACAAGAAGGATGCTCAATTGAAGAACTGAATGCTGGAAAGATTTGTGATTGGTTCTTGAAAGATAAGCTTAAAAGGGAGCAGAATATTGGTTCTGCTGTACTCCAATGGGATGATGATGACCCTTTCGCCGGCCAATTTTAATTACTCTTGTATTATGCCATCTCTTGTATTTAAGGCCCGTTCGGTGTCGTTTTTTGTTTTCAGTTTTTTGGTTTTTTATAAAACTAAATACCATAATATAAAAACCACAAAGGTAGTTTTCAGTTTTTTGTTGTCAGTTTTCAAAATTAGCATGATTATTACAAGTATGATTAATTTTTAGTTCATGATTAACATGACTTATAAAACCAAAAACTCAAAAATTGGAAACTGGCAATGATACCGAAAGAGCCCTCCGAAATTTGACATGTTAGGATTTTCCGAATGCTGATTTTTACCTAATTGTCAGACCACAAACCATATTTATTACTCTAACAACTTAGTAGGAGGTGGTGACTTGACTCTTGGTATAACATGCAGTCTTTTACAAGTGCCTGTATTTACAATGTCATCGGCAAAAAGTAAACATCTTAAATAATTGATCCTCTAGCTTGAAATTTTAATTTTAACACACTTGATATTTACAATTGGC ATGAACTTACTTAGACCCTGCAAATACTCTTATTACAATACTCATCATCATCATTCGATCTTTTACAACTCCAAATTTGCAATAGGAAAGATAAACAAATTTAGTTTTTATAAGCCAAAAGGCGCTACAAATAATGCTAAAAATGTTCTTACAGTACAAGTGAGAGCATACAATTCCAACGAAGAAGCCGCCGTCAGAAAAGATGAAGAAAGGGTTGAAAAGAAAAGCTTTCTCTCTTTAGAAGAAGCTGGTTTGGTGGAGATCTCTGGTTTAAGTATTCATGAACGTTTTCTTTGCAGATTAACGATATCGTCTTTGAATCTACTGAGAGTGATAGCAGAACAAGAAGGATGCTCAATTGAAGAACTGAATGCTGGAAAGATTTGTGATTGGTTCTTGAAAGATAAGCTTAAAAGGGAGCAGAATATTGGTTCTGCTGTACTCCAATGGGATGATGATGACCCTTTCGCCGGCCAATTTTAATTACTCTTGTATTATGCCATCTCTTGTATTTAAGGCCCGTTCGGTGTCGTTTTTTGTTTTCAGTTTTTTGGTTTTTTATAAAACTAAATACCATAATATAAAAACCACAAAGGTAGTTTTCAGTTTTTTGTTGTCAGTTTTCAAAATTAGCATGATTATTACAAGTATGATTAATTTTTAGTTCATGATTAACATGACTTATAAAACCAAAAACTCAAAAATTGGAAACTGGCAATGATACCGAAAGAGCCCTCCGAAATTTGACATGTTAGGATTTTCCGAATGCTGATTTTTACCTAATTGTCAGACCACAAACCATATTTATTACTCTAACAACTTAGTAGGAGGTGGTGACTTGACTCTTGGTATAACATGCAGTCTTTTACAAGTGCCTGTATTTACAATGTCATCGGCAAAAAGTAAACATCTTAAATAATTGATCCTCTAGCTTGAAATTTTAATTTTAACACACTTGATATTTACAATTGGC ATGAACTTACTTAGACCCTGCAAATACTCTTATTACAATACTCATCATCATCATTCGATCTTTTACAACTCCAAATTTGCAATAGGAAAGATAAACAAATTTAGTTTTTATAAGCCAAAAGGCGCTACAAATAATGCTAAAAATGTTCTTACAGTACAAGTGAGAGCATACAATTCCAACGAAGAAGCCGCCGTCAGAAAAGATGAAGAAAGGGTTGAAAAGAAAAGCTTTCTCTCTTTAGAAGAAGCTGGTTTGGTGGAGATCTCTGGTTTAAGTATTCATGAACGTTTTCTTTGCAGATTAACGATATCGTCTTTGAATCTACTGAGAGTGATAGCAGAACAAGAAGGATGCTCAATTGAAGAACTGAATGCTGGAAAGATTTGTGATTGGTTCTTGAAAGATAAGCTTAAAAGGGAGCAGAATATTGGTTCTGCTGTACTCCAATGGGATGATGATGACCCTTTCGCCGGCCAATTTTAA MNLLRPCKYSYYNTHHHHSIFYNSKFAIGKINKFSFYKPKGATNNAKNVLTVQVRAYNSNEEAAVRKDEERVEKKSFLSLEEAGLVEISGLSIHERFLCRLTISSLNLLRVIAEQEGCSIEELNAGKICDWFLKDKLKREQNIGSAVLQWDDDDPFAGQF Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo15390.1 vs. NCBI nr
Match: gi|902165813|gb|KNA07157.1| (hypothetical protein SOVF_174450 [Spinacia oleracea]) HSP 1 Score: 322.4 bits (825), Expect = 4.500e-85 Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 1
BLAST of Spo15390.1 vs. NCBI nr
Match: gi|731349974|ref|XP_010686269.1| (PREDICTED: uncharacterized protein LOC104900536 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 204.1 bits (518), Expect = 1.800e-49 Identity = 112/164 (68.29%), Postives = 127/164 (77.44%), Query Frame = 1
BLAST of Spo15390.1 vs. NCBI nr
Match: gi|1009108821|ref|XP_015886868.1| (PREDICTED: uncharacterized protein LOC107422001 [Ziziphus jujuba]) HSP 1 Score: 156.4 bits (394), Expect = 4.200e-35 Identity = 88/154 (57.14%), Postives = 110/154 (71.43%), Query Frame = 1
BLAST of Spo15390.1 vs. NCBI nr
Match: gi|297745649|emb|CBI40860.3| (unnamed protein product [Vitis vinifera]) HSP 1 Score: 154.8 bits (390), Expect = 1.200e-34 Identity = 89/155 (57.42%), Postives = 108/155 (69.68%), Query Frame = 1
BLAST of Spo15390.1 vs. NCBI nr
Match: gi|731440766|ref|XP_010646355.1| (PREDICTED: uncharacterized protein LOC104878183 [Vitis vinifera]) HSP 1 Score: 154.8 bits (390), Expect = 1.200e-34 Identity = 89/155 (57.42%), Postives = 108/155 (69.68%), Query Frame = 1
BLAST of Spo15390.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QIT8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_174450 PE=4 SV=1) HSP 1 Score: 322.4 bits (825), Expect = 3.100e-85 Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 1
BLAST of Spo15390.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BTM9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g181460 PE=4 SV=1) HSP 1 Score: 204.1 bits (518), Expect = 1.200e-49 Identity = 112/164 (68.29%), Postives = 127/164 (77.44%), Query Frame = 1
BLAST of Spo15390.1 vs. UniProtKB/TrEMBL
Match: F6I737_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0203g00050 PE=4 SV=1) HSP 1 Score: 154.8 bits (390), Expect = 8.600e-35 Identity = 89/155 (57.42%), Postives = 108/155 (69.68%), Query Frame = 1
BLAST of Spo15390.1 vs. UniProtKB/TrEMBL
Match: V4UJE6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017095mg PE=4 SV=1) HSP 1 Score: 153.3 bits (386), Expect = 2.500e-34 Identity = 92/156 (58.97%), Postives = 103/156 (66.03%), Query Frame = 1
BLAST of Spo15390.1 vs. UniProtKB/TrEMBL
Match: A0A0A9EZN6_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1) HSP 1 Score: 152.5 bits (384), Expect = 4.300e-34 Identity = 75/119 (63.03%), Postives = 94/119 (78.99%), Query Frame = 1
BLAST of Spo15390.1 vs. TAIR (Arabidopsis)
Match: AT4G21445.1 (unknown protein) HSP 1 Score: 150.6 bits (379), Expect = 8.200e-37 Identity = 81/126 (64.29%), Postives = 91/126 (72.22%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo15390.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo15390.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo15390.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0 Position : 0 Zoom : x 1
BLAST of Spo15390.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29 Position : 0 Zoom : x 1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
|