Spo15455 (gene)

Overview
NameSpo15455
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr4 : 107583143 .. 107584318 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCTAGAGTTTTTTCCCTTTAAAAAAAATAACAAATTAAATTTGGAATGCAAAAATGCAAAAACATACGGAATGAAAAATGCTCATCTAGCTATGAATTGAAATAGTGCACACATCACTTACTTTCTTTCTCATCTTAACTCATCAGCAAAATCATTCAAACTCTATCCGATTTAACACAAAGTTGAAGTTTCAGATCCAATGCTACCAATTAATTATGCCTAAAGTATCTCAAAATCAGGTAATTATAGTGTCTATATTCTCAAGGCTTTTCTTAATTAGAAAATTATGTGAGTTTGGTTTATGTTTAATTGGGTTGAGTTATTTTCCTTTTTTAGAGTTTCTTGCTTGAATTCTGGAGTGAAAATGAGTAAATATACAGAATAATTGCAGAGAACAGGGACATACCTTGCGATTTGCCGGCGTTTTCCTCGCCACCACCGAAGCCGTTTTACCTCTCCTAGCCTTCACTCCCTTCGCCGCCGCTGCCGGAGCTTGTCCCGCCTTAGCTGCTCCTGGATCTCCCATACTCGTCGGCCGACCACTTTAACTCCCATTCGCTTCTCTTCTAGCCGAATTATGGGTGGAGCGGAGGTGGAGCACCACGGGTATCATTGCCGGAATTATGGGTTGAGCGGAGGTGGAGCAGCACGGGTCATCATTGCGGGTCTGACATTTCTCTTTTTTGCCGGAATTCTAGGTTTAGCGTAGGCCCTTTTTTTGGAATTCTAGGTTGAAGGTGGCCGGAAATTTTTGCTGGATTCTGGGTTGAAGGTGCCTGAATCTGGTTGTTGGGTGTATTTACCTCTACTGTATTGATGGAGGGAGTTGGATTGATGGGGTAAAAAATGTAAAAAAGTAAAGGGGTAAATATAGAGAGGAGTAGTTGTGGAATTTAATAGGGCGAGTGAGTATTTATGGGGCGGAGTTTAGCGCTCCACCTTTTAATATTGTAAGACCATGTGCATCCTTGACCTTCGGTCAAGTGTCAAATAATATATATCTCTCATCCTTCTCCTTCTTCCACCTCATATTCCACTAACTTGACATACCACTTGTAACACCCCGACAATTCTCTCTTTTCTAAAATAACCTTTTTATATAAAACGTAGAGAATTATCAAGGCATTATCGCCCGTGTGAAAACGTAACGGCTTATTCAGAATTTTACAGCGGAA

mRNA sequence

TTCTAGAGTTTTTTCCCTTTAAAAAAAATAACAAATTAAATTTGGAATGCAAAAATGCAAAAACATACGGAATGAAAAATGCTCATCTAGCTATGAATTGAAATAGTGCACACATCACTTACTTTCTTTCTCATCTTAACTCATCAGCAAAATCATTCAAACTCTATCCGATTTAACACAAAGTTGAAGTTTCAGATCCAATGCTACCAATTAATTATGCCTAAAGTATCTCAAAATCAGAGAACAGGGACATACCTTGCGATTTGCCGGCGTTTTCCTCGCCACCACCGAAGCCGTTTTACCTCTCCTAGCCTTCACTCCCTTCGCCGCCGCTGCCGGAGCTTGTCCCGCCTTAGCTGCTCCTGGATCTCCCATACTCGTCGGCCGACCACTTTAACTCCCATTCGCTTCTCTTCTAGCCGAATTATGGGTGGAGCGGAGGTGGAGCACCACGGGTATCATTGCCGGAATTATGGGTTGAGCGGAGGTGGAGCAGCACGGGTCATCATTGCGGGTCTGACATTTCTCTTTTTTGCCGGAATTCTAGGTTTAGCGTAGGCCCTTTTTTTGGAATTCTAGGTTGAAGGTGGCCGGAAATTTTTGCTGGATTCTGGGTTGAAGGTGCCTGAATCTGGTTGTTGGGTGTATTTACCTCTACTGTATTGATGGAGGGAGTTGGATTGATGGGGTAAAAAATGTAAAAAAGTAAAGGGGTAAATATAGAGAGGAGTAGTTGTGGAATTTAATAGGGCGAGTGAGTATTTATGGGGCGGAGTTTAGCGCTCCACCTTTTAATATTGTAAGACCATGTGCATCCTTGACCTTCGGTCAAGTGTCAAATAATATATATCTCTCATCCTTCTCCTTCTTCCACCTCATATTCCACTAACTTGACATACCACTTGTAACACCCCGACAATTCTCTCTTTTCTAAAATAACCTTTTTATATAAAACGTAGAGAATTATCAAGGCATTATCGCCCGTGTGAAAACGTAACGGCTTATTCAGAATTTTACAGCGGAA

Coding sequence (CDS)

ATGCCTAAAGTATCTCAAAATCAGAGAACAGGGACATACCTTGCGATTTGCCGGCGTTTTCCTCGCCACCACCGAAGCCGTTTTACCTCTCCTAGCCTTCACTCCCTTCGCCGCCGCTGCCGGAGCTTGTCCCGCCTTAGCTGCTCCTGGATCTCCCATACTCGTCGGCCGACCACTTTAACTCCCATTCGCTTCTCTTCTAGCCGAATTATGGGTGGAGCGGAGGTGGAGCACCACGGGTATCATTGCCGGAATTATGGGTTGAGCGGAGGTGGAGCAGCACGGGTCATCATTGCGGGTCTGACATTTCTCTTTTTTGCCGGAATTCTAGGTTTAGCGTAG

Protein sequence

MPKVSQNQRTGTYLAICRRFPRHHRSRFTSPSLHSLRRRCRSLSRLSCSWISHTRRPTTLTPIRFSSSRIMGGAEVEHHGYHCRNYGLSGGGAARVIIAGLTFLFFAGILGLA
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo15455.1Spo15455.1mRNA


Homology
[Close]
BLAST of Spo15455.1 vs. NCBI nr
Match: gi|902161081|gb|KNA06517.1| (hypothetical protein SOVF_180380, partial [Spinacia oleracea])

HSP 1 Score: 214.9 bits (546), Expect = 7.100e-53
Identity = 107/113 (94.69%), Postives = 108/113 (95.58%), Query Frame = 1 

		  

Query: 1   MPKVSQNQRTGTYLAICRRFPRHHRSRFTSPSLHSLRRRCRSLSRLSCSWISHTRRPTTL 60
           MPKVSQNQRTGTYLAICR FPRHHRSRF SPSLHSLRRRCRSLSRLSC WISHTRRPTTL
Sbjct: 24  MPKVSQNQRTGTYLAICRLFPRHHRSRFISPSLHSLRRRCRSLSRLSCCWISHTRRPTTL 83

Query: 61  TPIRFSSSRIMGGAEVEHHGYHCRNYGLSGGGAARVIIAGLTFLFFAGILGLA 114
           TP+RFSSSRIMGGAEVEHHGYHCRNYGLS GGA RVIIAGLTFLFFAGILGLA
Sbjct: 84  TPLRFSSSRIMGGAEVEHHGYHCRNYGLSEGGAPRVIIAGLTFLFFAGILGLA 136
[Close]
BLAST of Spo15455.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QH05_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_180380 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 5.000e-53
Identity = 107/113 (94.69%), Postives = 108/113 (95.58%), Query Frame = 1 

		  

Query: 1   MPKVSQNQRTGTYLAICRRFPRHHRSRFTSPSLHSLRRRCRSLSRLSCSWISHTRRPTTL 60
           MPKVSQNQRTGTYLAICR FPRHHRSRF SPSLHSLRRRCRSLSRLSC WISHTRRPTTL
Sbjct: 24  MPKVSQNQRTGTYLAICRLFPRHHRSRFISPSLHSLRRRCRSLSRLSCCWISHTRRPTTL 83

Query: 61  TPIRFSSSRIMGGAEVEHHGYHCRNYGLSGGGAARVIIAGLTFLFFAGILGLA 114
           TP+RFSSSRIMGGAEVEHHGYHCRNYGLS GGA RVIIAGLTFLFFAGILGLA
Sbjct: 84  TPLRFSSSRIMGGAEVEHHGYHCRNYGLSEGGAPRVIIAGLTFLFFAGILGLA 136
The following BLAST results are available for this feature:
BLAST of Spo15455.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902161081|gb|KNA06517.1|7.1e-5394.6hypothetical protein SOVF_1803... [more]
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BLAST of Spo15455.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9QH05_SPIOL5.0e-5394.6Uncharacterized protein (Fragm... [more]
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BLAST of Spo15455.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo15455.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0050896 response to stimulus
biological_process GO:0008152 metabolic process
biological_process GO:0009611 response to wounding
biological_process GO:0009753 response to jasmonic acid
biological_process GO:0006857 oligopeptide transport
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0042128 nitrate assimilation
biological_process GO:0070838 divalent metal ion transport
biological_process GO:0030003 cellular cation homeostasis
biological_process GO:0009308 amine metabolic process
cellular_component GO:0005886 plasma membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0031410 cytoplasmic vesicle
molecular_function GO:0005507 copper ion binding
molecular_function GO:0048038 quinone binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0005506 iron ion binding
molecular_function GO:0020037 heme binding
molecular_function GO:0016758 transferase activity, transferring hexosyl groups
molecular_function GO:0016740 transferase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0016779 nucleotidyltransferase activity
molecular_function GO:0080048 GDP-D-glucose phosphorylase activity
molecular_function GO:0015293 symporter activity
molecular_function GO:0016757 transferase activity, transferring glycosyl groups
molecular_function GO:0008131 primary amine oxidase activity
RNA-Seq Expression