Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTAAAAAAAAAAAAAAAAAAAACCCTCACCGTTACAAGTCAAAATAAAATTTTGTTTAAAACAATTTCCATTGACTCCTACCTATCCTGGCCCAAAACAAACAACAACTAAAAGGAAACCAATTCTTCCATCTCCGCCCCTCCAACCACCTTCTCCACCCTCTCCACCGCTCTCTCCCCTCGAATTCTCATTCCACGCCGTCGCTTTATCTACTGGATCCCCTCCTCTGCTTACATATTCACGGCGCCGACAATATTTTTTCTCTGTCCGTCGAGATCTCCGCAATCGCCATCACCTCCATGATTAGCTGCTAATAACTCCCTAAAAAGGGAAAAAATTAAAGATGGTGAGAAATAGAGGAGAAAGGGAGGATTTAGAGAAGTTAGCGTTACCAGCGATCAACCATCATCATCATAATTCTAATATGAAGGATACATCGTTCAAAATCATGAGGCTTGTATTATGTTTAGTAGTATTTGTTACAGGTATAGTTATAGGATTAATTTCAGGTTCACGTATTGATGTTTTTGATAATTGGTATACAAATTCAGGGGACAACAACCGCTACGCCGCCGCCGTGCCAGAGAAAAACATTAGTAGTAGTAGGAGTGAAAACTGCACTGTTGTTATCAAACAGTCCTCTAAATGTGAGAAAGTTGATTGCTTGAGTTTAGAGAATTTAATACACCCTAAAGAGTTGATTCATGGTTTATCTGATCAGGAATTGTTTTGGAAGGCAACAATGGTGCCTAGAATTGAAGGGTATCCTTTCAAGAGGATACCTAAAGTGGCCTTTATGTTCTTGACTAGGGGTCCTTTGCCATTTTTGCCTTTGTGGGAGAGGTTTTTTGGTGGGCATGAAGATTATTTTTCTATTTATGTGCATACTTTGCCTGGGTTTATACTAAATGTTTCACCTTACTCCGTCTTCTTCGGGCGCCAAATTCCTAGTCAGGTATGTTAGTTTTTGGTGATTACTATCTTTCTTTAGATTTTGATATTGTATTTATATTACTTAGTGACGTTGTCATTGAAGAAGTCTGGTTTTGTTTTTCTAATTACGTTTTGATTTGAATAATTGATCTAATTTGACAGAAAATCATGAGAAATCAATGATGTAGCCCTTGGTTGAGTTTGTTGGGTAAACAAGATACTAGTAAAATTGCTAAATTTGATACGAATTGGTCTTGAAAATTAAATGGGGTAGACACTAGTGAATTTTTTCGAGTTAGGTATGGTTCAAGTTCTTGGTGTTCTTTATTGATGAAGGGATAATTTTTCCCTGGATTGATCTTGTTGGACAGAAACTTATGAGAAGTCTCAGTGTTGCCCTAGATTGAGAAGACACTAGTGAATTTGACACGTTTTGTTCTTGAATTTAACAACTAGTTCAAGAATTCTTGGTGCTTGAATAACTTGCCACTTTTTGAGGACTATAGTCCTAGTAATACAGAATTAGTGACCTAATGATTGGTGTTCTTAATTGATATAGGATAAGTTTTGACATGTTTTTTTGAAACTTAGGCTCTCACGCTGGTGGATTGTTGAACTTGGTAATTTGTTCTTTCAATCACCTTTAATGATATTGTGGTTAGTACTTTAACACCTACTGGCGCTACTACTGAAGTCATGGCCCCTGTGGGTGGCATATCATGATATAGGTCAAGAACTCAAGATGTTCTAGCCTTTTAAGAACATTGAAAGTTGGTGAATAAATAGCATCCGCTGTCTGTTGAATTTCTCCTCTTGATTTCTGGATTCGGTTCTGGTTTGAGCGATGGAAATGGTTTCCTTTCAAATGATGTCACACATGGGTTTTCCTTATGTGGATAAGTATAGTAAAGAACAAAACAAAACTATACTTACCATCAAATTTGTTTGTTTTGGATGTCTGGGATCATTAGTGACCTAAAACGTGAAATAAATTTTCCAAATGATTCATAGTATTTGAACTATTTGAAGTACCAAACAAACTGAAGGAAGACAAGGCCTATATCTACTAGTTGGTATAGGCTACTAGCTTCAAGTATCTGTGTATCAAGCTCCGGGTCTTATCTTTTTCTTTTATGTTGGAGGTGGGGGTGACTTCTAATACCTTAATGCAATCCAGCTTTTCTGTCAATAGGCTCATTAATGAGGTAACACGGATTAAAAATATATTCATATTGTCACGCAGTTTCATCTGGCTGCACAAGATGTTTTGTGGAAGGAAATCTATGCTAGCAATAGGATAATTACTTGATCGTGTTTTCTTATCATATGTCTGCTAGTCTATAACAGCACTGTTCTTTGTTTGATATGGTTCTTATTGCCTGCAGTGGCTGTTGAAATTCAAAAGGATTGATATTCGTGTGGGTGGGAGGGAATTTATGTAGGCACTGTGATGGCGTTGGGACCGGGACATGTTATCATCCACCTTTTGAATATCCCTTTTTCTTCACATGATTCTCTTAGTCAATCGATGGTATGTTGTTAGTATTTAGGTTTGATATCCGGTGGTGGTTATTCTTCCCTTTTTTTTCCAATTTCATACAAAGTTGTGCATCCACGAGTCTGTGGTTTTGCTAATTGACTGTTGCTTGTTTTCTGAGTAACAAAGTCTAATCACTTTCACCTTCCTGTAAGGCTGACATGTGAATAATAAATGGAGTAGTCATTACTCATGCAAGCATAGTTGAGCTGTTTGCTGTGTGTCTTGGAAACTTGGGGAGGTGTTCCACTCAACGTTCACACCATTTCTTTGACTTGATTAAAAATATTGTATGAACCCTTTAGTAGTAGAGGAAACAATATATAGCTGTAAGTGACATCCATGTCAGGGAATGAAATGCACAGTTTTTCTTCCAAAATTTGAGGTTACTTGTACGCCTTATATAAGATAGAGACAAATGAGGATTGAATCTCATTTCTTCATCTTCCTTGAGGATCCTCCTTATCTTTTTCCTTTCTAATGTTGATTGATCCGTGGTGCACAGCTCCACTGCTGCCATTTCTAGGACCGACCGATGAGTCAATTTGAAGAACAAGCAAGTGCATGTTCTTGTGTATGCTTTCAATGGGCTGGAAGTGGTTTACCAACTAAAATAGAGCCACCATAAGCTACATGGCCTATTAAAGTTTTCTTTTGTCGGTCTGTACGTGATGACTTCTAATGTTCATTTATTTTCTGAGTTTAATCTGCTATTTCTGGGTATAAGATTTAAACTTAATCTTGATGTTTGCAGAAAGTTTCTTGGGGTGATATATCTTTAGCAGATGCTGAGAAGAGGCTTTTGGCCAATGCTCTCCTTGACGTTTCGAATGAGCGATTTGTGCTTATTTCTGAGAGCTGTATCCCAGTCTACAATTTCCAAATAGTGTACAAATACCTTGTGGACTCTGTACACAGTTTTGTGGAGTCATATGATGATCCATCCCGTTATGGTCGTGGTCGCTACAGCCGGAGAATGGGACCCAACATCAAACTCCATCAATGGAGAAAAGGATCTCAGTGGTTTGAGATTAAGCGAGCTTTGGCTATTGACATCGTATCAGATTACAAGTACTATGATCTTTTTAGGAAATACTGCCATCCATCTTGCTACCCCGATGAGCACTATATCCCTACTTACCTCAACATATTTCATCCGTACCTCAATGCCAACCGTACTGTCACTTGGGTGGATTGGTCTTTGGGAGGACCTCATCCTGCGAGTTTTGGGAGAGAAAATATTACAGAAGGTTTCATACAGAATATCAGAAATAACGGGACAGAGTGTTGGTATAATTCTCAGAGAACACCTGTTTGTTACCTGTTTGCTCGAAAGTTCGCTCCAAGCGCCCTGGAGCCCTTGCTTAACATAAGTTTCAAGGTTCTGGGATTCTGATTGACTTGGCTGGAGTTGAACCACATCCAAAGAGTTTTGGTTTCGATGGTGGTTAGGTTAGATTTCTTTAGACACTGCTGGTATGTTTTTTGTTTTTTTTCCCTTGTACAGATAAAATCAATTTTAATATTTTAAAACCGGAAGATTTGCATGTCACTTGTCACCACAATCTCTTTTATTTTTATATATTTTAACTTATTTTGTATAACTCTTACACCGTGCGTCGCATGGGCCAAATAACTAGTTTTGATTAATGTAGTTACACACTGAAAAGAAAACAATTCTTGTACTTCCTTCGGTTTTTTAGCTGTTTGGTATTGAATTTTGCTTAATTTTCCTCCTCGTTTTCATCAAAATTTGGTGGTGGGATTATATAATTCAATCCCAGAGAAACCCGAAATCCCTG TTAAAAAAAAAAAAAAAAAAAACCCTCACCGTTACAAGTCAAAATAAAATTTTGTTTAAAACAATTTCCATTGACTCCTACCTATCCTGGCCCAAAACAAACAACAACTAAAAGGAAACCAATTCTTCCATCTCCGCCCCTCCAACCACCTTCTCCACCCTCTCCACCGCTCTCTCCCCTCGAATTCTCATTCCACGCCGTCGCTTTATCTACTGGATCCCCTCCTCTGCTTACATATTCACGGCGCCGACAATATTTTTTCTCTGTCCGTCGAGATCTCCGCAATCGCCATCACCTCCATGATTAGCTGCTAATAACTCCCTAAAAAGGGAAAAAATTAAAGATGGTGAGAAATAGAGGAGAAAGGGAGGATTTAGAGAAGTTAGCGTTACCAGCGATCAACCATCATCATCATAATTCTAATATGAAGGATACATCGTTCAAAATCATGAGGCTTGTATTATGTTTAGTAGTATTTGTTACAGGTATAGTTATAGGATTAATTTCAGGTTCACGTATTGATGTTTTTGATAATTGGTATACAAATTCAGGGGACAACAACCGCTACGCCGCCGCCGTGCCAGAGAAAAACATTAGTAGTAGTAGGAGTGAAAACTGCACTGTTGTTATCAAACAGTCCTCTAAATGTGAGAAAGTTGATTGCTTGAGTTTAGAGAATTTAATACACCCTAAAGAGTTGATTCATGGTTTATCTGATCAGGAATTGTTTTGGAAGGCAACAATGGTGCCTAGAATTGAAGGGTATCCTTTCAAGAGGATACCTAAAGTGGCCTTTATGTTCTTGACTAGGGGTCCTTTGCCATTTTTGCCTTTGTGGGAGAGGTTTTTTGGTGGGCATGAAGATTATTTTTCTATTTATGTGCATACTTTGCCTGGGTTTATACTAAATGTTTCACCTTACTCCGTCTTCTTCGGGCGCCAAATTCCTAGTCAGAAAGTTTCTTGGGGTGATATATCTTTAGCAGATGCTGAGAAGAGGCTTTTGGCCAATGCTCTCCTTGACGTTTCGAATGAGCGATTTGTGCTTATTTCTGAGAGCTGTATCCCAGTCTACAATTTCCAAATAGTGTACAAATACCTTGTGGACTCTGTACACAGTTTTGTGGAGTCATATGATGATCCATCCCGTTATGGTCGTGGTCGCTACAGCCGGAGAATGGGACCCAACATCAAACTCCATCAATGGAGAAAAGGATCTCAGTGGTTTGAGATTAAGCGAGCTTTGGCTATTGACATCGTATCAGATTACAAGTACTATGATCTTTTTAGGAAATACTGCCATCCATCTTGCTACCCCGATGAGCACTATATCCCTACTTACCTCAACATATTTCATCCGTACCTCAATGCCAACCGTACTGTCACTTGGGTGGATTGGTCTTTGGGAGGACCTCATCCTGCGAGTTTTGGGAGAGAAAATATTACAGAAGGTTTCATACAGAATATCAGAAATAACGGGACAGAGTGTTGGTATAATTCTCAGAGAACACCTGTTTGTTACCTGTTTGCTCGAAAGTTCGCTCCAAGCGCCCTGGAGCCCTTGCTTAACATAAGTTTCAAGGTTCTGGGATTCTGATTGACTTGGCTGGAGTTGAACCACATCCAAAGAGTTTTGGTTTCGATGGTGGTTAGGTTAGATTTCTTTAGACACTGCTGGTATGTTTTTTGTTTTTTTTCCCTTGTACAGATAAAATCAATTTTAATATTTTAAAACCGGAAGATTTGCATGTCACTTGTCACCACAATCTCTTTTATTTTTATATATTTTAACTTATTTTGTATAACTCTTACACCGTGCGTCGCATGGGCCAAATAACTAGTTTTGATTAATGTAGTTACACACTGAAAAGAAAACAATTCTTGTACTTCCTTCGGTTTTTTAGCTGTTTGGTATTGAATTTTGCTTAATTTTCCTCCTCGTTTTCATCAAAATTTGGTGGTGGGATTATATAATTCAATCCCAGAGAAACCCGAAATCCCTG ATGGTGAGAAATAGAGGAGAAAGGGAGGATTTAGAGAAGTTAGCGTTACCAGCGATCAACCATCATCATCATAATTCTAATATGAAGGATACATCGTTCAAAATCATGAGGCTTGTATTATGTTTAGTAGTATTTGTTACAGGTATAGTTATAGGATTAATTTCAGGTTCACGTATTGATGTTTTTGATAATTGGTATACAAATTCAGGGGACAACAACCGCTACGCCGCCGCCGTGCCAGAGAAAAACATTAGTAGTAGTAGGAGTGAAAACTGCACTGTTGTTATCAAACAGTCCTCTAAATGTGAGAAAGTTGATTGCTTGAGTTTAGAGAATTTAATACACCCTAAAGAGTTGATTCATGGTTTATCTGATCAGGAATTGTTTTGGAAGGCAACAATGGTGCCTAGAATTGAAGGGTATCCTTTCAAGAGGATACCTAAAGTGGCCTTTATGTTCTTGACTAGGGGTCCTTTGCCATTTTTGCCTTTGTGGGAGAGGTTTTTTGGTGGGCATGAAGATTATTTTTCTATTTATGTGCATACTTTGCCTGGGTTTATACTAAATGTTTCACCTTACTCCGTCTTCTTCGGGCGCCAAATTCCTAGTCAGAAAGTTTCTTGGGGTGATATATCTTTAGCAGATGCTGAGAAGAGGCTTTTGGCCAATGCTCTCCTTGACGTTTCGAATGAGCGATTTGTGCTTATTTCTGAGAGCTGTATCCCAGTCTACAATTTCCAAATAGTGTACAAATACCTTGTGGACTCTGTACACAGTTTTGTGGAGTCATATGATGATCCATCCCGTTATGGTCGTGGTCGCTACAGCCGGAGAATGGGACCCAACATCAAACTCCATCAATGGAGAAAAGGATCTCAGTGGTTTGAGATTAAGCGAGCTTTGGCTATTGACATCGTATCAGATTACAAGTACTATGATCTTTTTAGGAAATACTGCCATCCATCTTGCTACCCCGATGAGCACTATATCCCTACTTACCTCAACATATTTCATCCGTACCTCAATGCCAACCGTACTGTCACTTGGGTGGATTGGTCTTTGGGAGGACCTCATCCTGCGAGTTTTGGGAGAGAAAATATTACAGAAGGTTTCATACAGAATATCAGAAATAACGGGACAGAGTGTTGGTATAATTCTCAGAGAACACCTGTTTGTTACCTGTTTGCTCGAAAGTTCGCTCCAAGCGCCCTGGAGCCCTTGCTTAACATAAGTTTCAAGGTTCTGGGATTCTGA MVRNRGEREDLEKLALPAINHHHHNSNMKDTSFKIMRLVLCLVVFVTGIVIGLISGSRIDVFDNWYTNSGDNNRYAAAVPEKNISSSRSENCTVVIKQSSKCEKVDCLSLENLIHPKELIHGLSDQELFWKATMVPRIEGYPFKRIPKVAFMFLTRGPLPFLPLWERFFGGHEDYFSIYVHTLPGFILNVSPYSVFFGRQIPSQKVSWGDISLADAEKRLLANALLDVSNERFVLISESCIPVYNFQIVYKYLVDSVHSFVESYDDPSRYGRGRYSRRMGPNIKLHQWRKGSQWFEIKRALAIDIVSDYKYYDLFRKYCHPSCYPDEHYIPTYLNIFHPYLNANRTVTWVDWSLGGPHPASFGRENITEGFIQNIRNNGTECWYNSQRTPVCYLFARKFAPSALEPLLNISFKVLGF Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo15528.1 vs. NCBI nr
Match: gi|902131815|gb|KNA04297.1| (hypothetical protein SOVF_200990 [Spinacia oleracea]) HSP 1 Score: 871.3 bits (2250), Expect = 6.700e-250 Identity = 417/417 (100.00%), Postives = 417/417 (100.00%), Query Frame = 1
BLAST of Spo15528.1 vs. NCBI nr
Match: gi|731341756|ref|XP_010682058.1| (PREDICTED: uncharacterized protein LOC104896961 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 686.8 bits (1771), Expect = 2.400e-194 Identity = 333/430 (77.44%), Postives = 372/430 (86.51%), Query Frame = 1
BLAST of Spo15528.1 vs. NCBI nr
Match: gi|870856263|gb|KMT07935.1| (hypothetical protein BVRB_6g145380 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 663.7 bits (1711), Expect = 2.100e-187 Identity = 319/398 (80.15%), Postives = 349/398 (87.69%), Query Frame = 1
BLAST of Spo15528.1 vs. NCBI nr
Match: gi|731341758|ref|XP_010682059.1| (PREDICTED: uncharacterized protein LOC104896962 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 555.8 bits (1431), Expect = 6.300e-155 Identity = 267/419 (63.72%), Postives = 327/419 (78.04%), Query Frame = 1
BLAST of Spo15528.1 vs. NCBI nr
Match: gi|870856264|gb|KMT07936.1| (hypothetical protein BVRB_6g145390 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 555.8 bits (1431), Expect = 6.300e-155 Identity = 267/419 (63.72%), Postives = 327/419 (78.04%), Query Frame = 1
BLAST of Spo15528.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QAI6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_200990 PE=4 SV=1) HSP 1 Score: 871.3 bits (2250), Expect = 4.700e-250 Identity = 417/417 (100.00%), Postives = 417/417 (100.00%), Query Frame = 1
BLAST of Spo15528.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C2E6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g145380 PE=4 SV=1) HSP 1 Score: 663.7 bits (1711), Expect = 1.500e-187 Identity = 319/398 (80.15%), Postives = 349/398 (87.69%), Query Frame = 1
BLAST of Spo15528.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EXI6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g145390 PE=4 SV=1) HSP 1 Score: 555.8 bits (1431), Expect = 4.400e-155 Identity = 267/419 (63.72%), Postives = 327/419 (78.04%), Query Frame = 1
BLAST of Spo15528.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QRS1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_155590 PE=4 SV=1) HSP 1 Score: 545.4 bits (1404), Expect = 5.900e-152 Identity = 261/415 (62.89%), Postives = 322/415 (77.59%), Query Frame = 1
BLAST of Spo15528.1 vs. UniProtKB/TrEMBL
Match: M1CBJ4_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400024872 PE=4 SV=1) HSP 1 Score: 528.9 bits (1361), Expect = 5.700e-147 Identity = 261/421 (62.00%), Postives = 322/421 (76.48%), Query Frame = 1
BLAST of Spo15528.1 vs. TAIR (Arabidopsis)
Match: AT1G10280.1 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein) HSP 1 Score: 488.0 bits (1255), Expect = 5.700e-138 Identity = 229/399 (57.39%), Postives = 296/399 (74.19%), Query Frame = 1
BLAST of Spo15528.1 vs. TAIR (Arabidopsis)
Match: AT3G21310.1 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein) HSP 1 Score: 406.0 bits (1042), Expect = 2.800e-113 Identity = 189/311 (60.77%), Postives = 240/311 (77.17%), Query Frame = 1
BLAST of Spo15528.1 vs. TAIR (Arabidopsis)
Match: AT5G11730.1 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein) HSP 1 Score: 389.8 bits (1000), Expect = 2.100e-108 Identity = 187/326 (57.36%), Postives = 229/326 (70.25%), Query Frame = 1
BLAST of Spo15528.1 vs. TAIR (Arabidopsis)
Match: AT1G68390.1 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein) HSP 1 Score: 371.7 bits (953), Expect = 5.900e-103 Identity = 195/399 (48.87%), Postives = 259/399 (64.91%), Query Frame = 1
BLAST of Spo15528.1 vs. TAIR (Arabidopsis)
Match: AT1G51770.1 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein) HSP 1 Score: 370.5 bits (950), Expect = 1.300e-102 Identity = 168/311 (54.02%), Postives = 227/311 (72.99%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo15528.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo15528.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo15528.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo15528.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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