Spo15546 (gene)

Overview
NameSpo15546
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionRibosomal protein
Locationchr2 : 30547571 .. 30553509 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CAATACGTATTTCAAAATATATTTCACCGGTACAACAAATAAGGGTTAGAAGTTTTAATAGAAAGCCTATTTCGAAGCCCATAAAAACCCTTATAAAGCCCATTTGTATTATCAGGACCCATAATCATTAGAAAATAGTCAAAATACTGAGTAGAAACTACTGAAAACTTTCGGAACAAAAAAAAATAATCTAAATATCGAAAAACCCTACTAATTCCCAGCTCAATCTGAAGCTACATTTCAGAAAGCGAGCTTTGATCTTCGTAACCAGGTGATTTTTTCTTCTTCTCATTTTTAAGATTTGCAATTATTTTTATAACTCGATTTGTGAATAATGAATAAGACAATGGGTTCTGAATAATTTGCGATTTTGTTGATAATTAGCGGAACAAGTTTGAAGATGTGAAATGAACTGCTAAAATTGATTAAAGACGCTTCTTTGTTGAACCTTTTTGGGAAATATGCTCAAGAATTAATCTGGGTAAAAGGGATATTAAGAGATTGATTCGAGTACTCTGAAGTAAATACTTTCTGGGTAATTGTTGTTTTTCTGAAGTAATTTTCTGTAATAAGAACTCATTTGAATGTTGTAGGATGAATTTACTTATTGGCTGAACTGCTTTTGGTTCTTATTAATTATGAGCTTATCTTCCAAGGTGCAATTTTGTTGTTTTGTGTATCCCTTGAAGTGGATGGAATGACGGTTCGGAATTGGGCGAATTGAATTGTAACATTTCTTGATGACCGCATTAAATGATTTTGAAGACTTTTCTCAATTCGAAGCGCATGAGTCACTGATATTTGTAGGTGTTGTGTTATAGTTGTTCTAGTAGTAAAGGACATAGGGTATTTTGGGTGAATTTATACTAGCATATCTTCATAACCTTAAGTGTAGTAGCTGCTTGAGTATGTGGTTATTATGGTAAAGTTCCACTTGGAAGGTCTTAGTGTGCAATGAGAATGAGAGTTTGGAATTGGGTGAAATTGTAACATTGCTTGATGATCGATGCAATAATTGATTTCGAATCCCACTTTCAATCAAGGCACTTGTGAATCACTGATATTTATAGGTGTTACAGTTGTTCGTGGGGTGTTTTGGGTGGATTAATAGTAGTATATCTTCATAACCTAACTACCTAAGTGTAGTAGCTGCGCGAGTATGTGGTATTGTGGTCCTTTTAATAAAGCTGCACTCTGTGCAACTGAGTGCCGATTGAATTCTGCTTGAGTATGTTCTATCCTATTGTTTGATGTGCGGAGGTGTTATGCAGTAAGTGAGAGGTCCAAGCGTAGGAAAATGTAGTGAACTTTTGATGTATTTTCGGGATTTCTTATTGGGTTGATATGAAAATATAGAAATACTTGCTAAGATGTTGGCTAATTTCAGTTATTGGAGATATTATGGAGTGGGTGGGGGGAGCTTTGCTTCCATCTCTCCTTTTGGAGGAACACGTGCTTGAATAATTGAGTTGGCTAAAAAGATAATGGGTTTGTGATTTTCATTTATGAAAATTTTTGTATACCACAGGGTTTTTTTTGTAGTCGTATAACACTTTTTTACCATGTTAACTTACTAGAAATATGCCTATATCATTTTGGTCAAAGTCCCATGGACCCATGGTGAGAAATAAAGTAAAAAGGGATTTTATGGGCACCCAGCAACATCGTAGGACTGTGAAATTGGAAGGATTTCATGCATTTTAGTTTTGAGGTTGCCTTTTTGTGACCAAGTCCTAGTTGAGGAAGAAGGTCGCTGATGCTAGAATATCACGTTTGATCTTTTTTAGTCACTTGGGAGTTGGGACTGTGGGAAGCTCCATGTCAACACACAAGGCAGAAGAATGCAACTTTTCTGTACATGTTCAAGCCAACTAAGAGCGGAGGATTTCTTTCCCTGGGTATGGCAGGCAGCACTGCAGCGATGATTTTTTCCACTTTGGTAAGGTGTACAGCCATAGAGTGTACACTAGTGACCAGTTCCTCAATCAATTGGATAACATCACTGCCTGTATTACCTGACTCTTCCTAGTCCTCCGAGGTTATATAATGGCTGGAAGTACTGTTGGGTCATGCATACCACATCCTCCACTCTGAAACTGTCTTGCATTTAAGGATCTTCTATATTGGATAATTTTGTAGGATTTAGACATTCTGCAGAGATTTAGAACTTGTAGTTTTCTGGTGTGGGAAGCAATTGTTTGCAGTTTATGGCTGAAAGAAAAATGGAGGAAAAGAATTGGGTGAAGTCAACCAGTCATTCATATAGTCAGATTTGGGGGTGGTCGTGGGGTTCAGTGACGCGGGAGTTTAAGTTTGGGTTGGGGATGTTGGGGGAAAGGATTTTAATTCAACACTTAATCCCCAGCAGTGTTTGAACCGATGGGTCATTTTTTATTCATGGAGCTTGCATATGAGTCTCAAGCCCGACCCTGGGTATAAGCAAGGGGTGTGACGGCCAAGGGCCCGTGCCCGGAATGGGCCCTGAAAGAATCTGCGTCCAGTTATTTTCTATTAGTACAAAATAATGTATGAAATAAGCATAATAAACTCTATGGCTCAGTGGTAGCTGTGATGTGATTGATTTTAGTAATCACGGGATTGATCATTTTCTGGGCCGGCCCTAGGGTAGGGCATAAGGGGCCGCCGCCCTGGGCCCCAGGGGAAAAAGCCCAACATTTATTAAGCCCGTTAATTCTAAAATATGTATTATTCAATGAAAACTTAGACAACCATGCACTGCAGAGCAGTGGTTGTTTGCGTGATATATCAGGGCGTCCACCAAGGTTCGATAACTACTGAGGTGGTAGTTCGTTTTTATTTTTTTCGTTTTTTTGTTATTTCTCATTTGCTAGCTATGCAATTATAATCTATTACCTAATTTGAATCCAAATAAACACCAAAAGTAGAGCCGTGTACTATCCTTATAATCATATATTTTCTTCTTCTTTTGTTAATATAATCACACTCCTTGTTTTTATTTGGAGTTTAGCAAAAATAATTGGATTGTAGTTTATTGTACTTCAAAAATTATTACCGACTTGCTAAAATTTCAAGTTCCATTTCCCTTCAGTAATTCATCGTTGTCTTATGCTTGATGATTAATGTTTAAAATATTAGAATATAATTCATGTTTAATGGCACAAGGTTGAAAGTATTCAAGCCTTCATATTTTGTAATAGAGTCAATTTCTCATGGCTAATTTAATTAGATATAGAGTAGTATTGAGTCTTAAGAAATGAAACGTCAATTATTTACATACATTTTTCAATAAAAAAAAGTACATTACATCGATTCACAATTTTTTTTGTCTATGTGCCTTTTTAAAAGTAAGGGCCTCGATTTTTGTTTTTCCCATAGGCCACCAAAAAGTCAGGACCGGCCCTGATCATTTTGGTAAAGCTGCACTTGGAACTTTGGAAGGTCTTAGTGAGCAACTGAGTGTTGATTACATAATATTTGAGTATGTTTATCCTATTGTTTGATGTGCGGAGGAGTAATGCTGTAATTAAGAGGTCCAAACATTTGAAGTTTTAGTGTCTCGTGAACTTTTGAGTTATGCTGGGGATTTCTTATTGGGTTGGAGTGGGGGTGGGGGGGTAATGTACTAATGGTAGTATCTATTTTTGGGGGGTTACTAACTTACTATGGTTAAGCTTTGCTTCCATCTCTCCTTTTGGAGGAATATGTGCTTGTAAGTTGTAATGATTGAGTGGCTGGAACTACACAGGATTTATGACTTCAGTTATGAAAGGTTTTGTAACCACAGGGTTTTGTTGCAGTCGTTTAAACTTGTTTCCCGTGTTAACTTGCTAGAAATATGTGTATATCTGAATGAGTTTGAGTTGTAGTTTTTGGTTAAAGTCCCATGGTGAGAGATAAAGCAAAAAATGGATTTTATGTGCACCCAGCAGCATTGTATGATTGTGAAATGGAAGGATTTTATGCATTTTAGTTTTAAGATTGCTTTTTGTGACCAAGTCCTAATTAAGGAAGAAGGTCGCTGATGCTAGACCAACGTGATTGATCTTTTTTTCATCACTTGTAACCGTGGGGTAGATGAATGCAACTTTTATGTACATGTTCAAGCCAACTAAGAGCAGAGGATTTCTTTCCCTGGGTATGACAGGCAGCACTGCAACACTGATTTATTTCACTTTGATAAGGCGTAGCCTCGTAGAGCCGTAAAGCGTACACTAGTGTCCAGTTCGTCAATCAATCTGATAATATCATTGCCTGTATTACCTGACATCTCTTCTCTATCCTCTGAGGTTATCTAATGGTTGGAAGTGCTGTTTGGTCAATGCATACCACATTCTCTACTCTGAAAAACTGTCGTACATTTACTTTACTAAAGAGTTGTTATCATTCTGTTTTGGGAGTTAATCGTGTCTAACATCTAAGGATCTTCTGTATCATAGAGTCTTGTAGGATTTAGACATTTCACAGAGATTTAAAAAGCTGTAGTTTTTTGGTGTGGGAAGCAGTTTGCAGTTTATGGCAGAAAGACAAGAGGAAGAAAAGTATGGGATGAAGTCACTCATGTAGTCAGGTTTGAGGGTGGTCACGGGATTCAGGGAGGTGGGGGTTGGAGTTTGAGTTGGGGATGTTGGGGGAAAGGATTTATTCACCACTCCTCTCCAACAGTGATTGAGCCCATGGATCATCTTTTATCCATGGAGCTTGCAGATAAGTTTGTCGTAGTAGCAGTGAAATCTTCAGTTCAATACAAATTTGCTTGATAGGATGATGTTCTAGTACCTTCACCAATTGCATCGTTGCTTGTCAAGTGCAACGCCACATCGATTACATAATATAACCGGATACATCATGGACTATGGCGACGATTGATTTGTGCTAAATGTTATTATGCTGATGCTATTCCATTCTTTACTGTGCAATATCTTCTTAATTTGACATTCAAACATCTTCCATGTGTAAGGTTCATTTTAGATGTTTCTTAATGGACCTAGAAACAAGTAAAACAACACCAACATGTGGTAGTCCTGCCGTCTTGGGTGGGTAAATGGTGGATCTGAATGCTTCAACCTAATGATCCCCGTTCAGGACCCCTAGGTTCTTACATTTGTAAAGACGGGATGGGGGAGGGGGATGGCAAAAAGTCTTGTGTAGATCAGTGTGTATTAAGGTGCCTCCCCGGCCCCCAGCAGAGAGGGGATTTTGATATTAATTTATTTCATTGATTTGAAAAAATGCCCTTACAAAAGTTACACATGCAGTAACCATGAAGGTCCGGTCATCAGTGAGGAAGATGTGTGAGTTTTGCAAGGTGGTTAAACGCCGTGGCCGTGTGTACGTAGTTTGCAGTGCAAAACCCAAGCACAAGCAGCGGCAAGGCTTCACAACGTTTGCACATGAAGGGCCCCTTATTAACACGTATGTTCAGTCTATATCTTTTGTTTCGCTGATGAGATGTGCATAAATAAGAATTGAAAAGGTTGATCAGTATTTTGGACTTTCTATCTTAGGCTAACTAATCATTTATCTGCTCATTTCTTCTTAATAAACAAAATGGAGTAAGTTGGAAGTTGGTCCCTCCATGTAGGTGTGTTTGTCATAGTTTCCTTTTTGGTTTGTCCAACAAAGACTAATCATAATTAGTGAATATTACGCAGTTCATACGTAGTTGGACGTGTGTATCACTTGATAATTAATAATTGCAATTACTGATTAGTGAGATTATCTCTTTTGGCATGTAAGTTCAGGTAGCTGCTTTTCTCATTTCGAAATGCCACAATGATGCTAATAACTTGTTCCTTGGAACATTCAGGTCTGGAGACATAAGTTCAAAGCCATTGATCTCGAGCACCCCAAGCTTGCGCATCGGTCTGGCATCTACAGTTCCTAAAGTACAGCATCCTGCTGTGATGTTTGGTTGGAGAGATGCCATTGCTTCCCTTCTGTTTAAGAAAGGCGATTAA

mRNA sequence

CAATACGTATTTCAAAATATATTTCACCGGTACAACAAATAAGGGTTAGAAGTTTTAATAGAAAGCCTATTTCGAAGCCCATAAAAACCCTTATAAAGCCCATTTGTATTATCAGGACCCATAATCATTAGAAAATAGTCAAAATACTGAGTAGAAACTACTGAAAACTTTCGGAACAAAAAAAAATAATCTAAATATCGAAAAACCCTACTAATTCCCAGCTCAATCTGAAGCTACATTTCAGAAAGCGAGCTTTGATCTTCGTAACCAGTAACCATGAAGGTCCGGTCATCAGTGAGGAAGATGTGTGAGTTTTGCAAGGTGGTTAAACGCCGTGGCCGTGTGTACGTAGTTTGCAGTGCAAAACCCAAGCACAAGCAGCGGCAAGGCTTCACAACGTTTGCACATGAAGGGCCCCTTATTAACACGTCTGGAGACATAAGTTCAAAGCCATTGATCTCGAGCACCCCAAGCTTGCGCATCGGTCTGGCATCTACAGTTCCTAAAGTACAGCATCCTGCTGTGATGTTTGGTTGGAGAGATGCCATTGCTTCCCTTCTGTTTAAGAAAGGCGATTAA

Coding sequence (CDS)

ATGAAGGTCCGGTCATCAGTGAGGAAGATGTGTGAGTTTTGCAAGGTGGTTAAACGCCGTGGCCGTGTGTACGTAGTTTGCAGTGCAAAACCCAAGCACAAGCAGCGGCAAGGCTTCACAACGTTTGCACATGAAGGGCCCCTTATTAACACGTCTGGAGACATAAGTTCAAAGCCATTGATCTCGAGCACCCCAAGCTTGCGCATCGGTCTGGCATCTACAGTTCCTAAAGTACAGCATCCTGCTGTGATGTTTGGTTGGAGAGATGCCATTGCTTCCCTTCTGTTTAAGAAAGGCGATTAA

Protein sequence

MKVRSSVRKMCEFCKVVKRRGRVYVVCSAKPKHKQRQGFTTFAHEGPLINTSGDISSKPLISSTPSLRIGLASTVPKVQHPAVMFGWRDAIASLLFKKGD
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo15546.1Spo15546.1mRNA


Homology
[Close]
BLAST of Spo15546.1 vs. NCBI nr
Match: gi|902175440|gb|KNA08596.1| (hypothetical protein SOVF_161230 [Spinacia oleracea])

HSP 1 Score: 203.4 bits (516), Expect = 1.900e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 

		  

Query: 1   MKVRSSVRKMCEFCKVVKRRGRVYVVCSAKPKHKQRQGFTTFAHEGPLINTSGDISSKPL 60
           MKVRSSVRKMCEFCKVVKRRGRVYVVCSAKPKHKQRQGFTTFAHEGPLINTSGDISSKPL
Sbjct: 1   MKVRSSVRKMCEFCKVVKRRGRVYVVCSAKPKHKQRQGFTTFAHEGPLINTSGDISSKPL 60

Query: 61  ISSTPSLRIGLASTVPKVQHPAVMFGWRDAIASLLFKKGD 101
           ISSTPSLRIGLASTVPKVQHPAVMFGWRDAIASLLFKKGD
Sbjct: 61  ISSTPSLRIGLASTVPKVQHPAVMFGWRDAIASLLFKKGD 100
[Close]
BLAST of Spo15546.1 vs. NCBI nr
Match: gi|870850792|gb|KMT02858.1| (hypothetical protein BVRB_8g194360 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 172.2 bits (435), Expect = 4.700e-40
Identity = 83/100 (83.00%), Postives = 91/100 (91.00%), Query Frame = 1 

		  

Query: 1   MKVRSSVRKMCEFCKVVKRRGRVYVVCSAKPKHKQRQGFTTFAHEGPLINTSGDISSKPL 60
           MKVRSSVRKMCEFCKVVKRRG VYV+CSAKPKHKQRQGF++FAHEGPLINTS DISSKPL
Sbjct: 232 MKVRSSVRKMCEFCKVVKRRGCVYVLCSAKPKHKQRQGFSSFAHEGPLINTSADISSKPL 291

Query: 61  ISSTPSLRIGLASTVPKVQHPAVMFGWRDAIASLLFKKGD 101
           IS++PSLRIGL S VPK+  P  +FGWRDAIASLLFKK +
Sbjct: 292 ISNSPSLRIGLTSIVPKLHQPTAVFGWRDAIASLLFKKSN 331
[Close]
BLAST of Spo15546.1 vs. NCBI nr
Match: gi|225445521|ref|XP_002285234.1| (PREDICTED: uncharacterized protein LOC100250810 [Vitis vinifera])

HSP 1 Score: 130.2 bits (326), Expect = 2.000e-27
Identity = 61/98 (62.24%), Postives = 79/98 (80.61%), Query Frame = 1 

		  

Query: 1  MKVRSSVRKMCEFCKVVKRRGRVYVVCSAKPKHKQRQGFTTFAHEGPLINTSGDISSKPL 60
          MKVRSSV+KMCE+C+ VKRRGRVYV+C+A PKHKQRQG +TFAHEGPL   S ++++K  
Sbjct: 1  MKVRSSVKKMCEYCRTVKRRGRVYVLCTANPKHKQRQGMSTFAHEGPLPPMSSEMNAKQE 60

Query: 61 ISSTPSLRIGLASTVPKVQHPAVMFGWRDAIASLLFKK 99
          IS    L+ GLAS +PK   P++M+GWR ++ASLLFK+
Sbjct: 61 ISRNHRLQGGLASIIPKKPEPSMMYGWRASLASLLFKQ 98
[Close]
BLAST of Spo15546.1 vs. NCBI nr
Match: gi|147794982|emb|CAN71764.1| (hypothetical protein VITISV_039227 [Vitis vinifera])

HSP 1 Score: 130.2 bits (326), Expect = 2.000e-27
Identity = 61/98 (62.24%), Postives = 79/98 (80.61%), Query Frame = 1 

		  

Query: 1  MKVRSSVRKMCEFCKVVKRRGRVYVVCSAKPKHKQRQGFTTFAHEGPLINTSGDISSKPL 60
          MKVRSSV+KMCE+C+ VKRRGRVYV+C+A PKHKQRQG +TFAHEGPL   S ++++K  
Sbjct: 1  MKVRSSVKKMCEYCRTVKRRGRVYVLCTANPKHKQRQGMSTFAHEGPLPPMSSEMNAKQE 60

Query: 61 ISSTPSLRIGLASTVPKVQHPAVMFGWRDAIASLLFKK 99
          IS    L+ GLAS +PK   P++M+GWR ++ASLLFK+
Sbjct: 61 ISXNHRLQGGLASIIPKKPEPSMMYGWRASLASLLFKQ 98
[Close]
BLAST of Spo15546.1 vs. NCBI nr
Match: gi|703076085|ref|XP_010090249.1| (50S ribosomal protein L36 [Morus notabilis])

HSP 1 Score: 124.4 bits (311), Expect = 1.100e-25
Identity = 58/100 (58.00%), Postives = 75/100 (75.00%), Query Frame = 1 

		  

Query: 1   MKVRSSVRKMCEFCKVVKRRGRVYVVCSAKPKHKQRQGFTTFAHEGPLINTSGDISSKPL 60
           MKVRSSV+KMCEFC+ VKRRGRVYV+C+A PKHKQRQG +T A+EGPL + S    SKP 
Sbjct: 1   MKVRSSVKKMCEFCRTVKRRGRVYVLCTANPKHKQRQGVSTLAYEGPLPSQSSGTVSKPE 60

Query: 61  ISSTPSLRIGLASTVPKVQHPAVMFGWRDAIASLLFKKGD 101
           ++    + +GLAS +PK   P++  GWR  +ASLLFK+ +
Sbjct: 61  VNVNQGVPVGLASLIPKKTEPSMTLGWRMGLASLLFKRSN 100
[Close]
BLAST of Spo15546.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QPZ2_SPIOL (Ribosomal protein OS=Spinacia oleracea GN=SOVF_161230 PE=3 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 1.300e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 

		  

Query: 1   MKVRSSVRKMCEFCKVVKRRGRVYVVCSAKPKHKQRQGFTTFAHEGPLINTSGDISSKPL 60
           MKVRSSVRKMCEFCKVVKRRGRVYVVCSAKPKHKQRQGFTTFAHEGPLINTSGDISSKPL
Sbjct: 1   MKVRSSVRKMCEFCKVVKRRGRVYVVCSAKPKHKQRQGFTTFAHEGPLINTSGDISSKPL 60

Query: 61  ISSTPSLRIGLASTVPKVQHPAVMFGWRDAIASLLFKKGD 101
           ISSTPSLRIGLASTVPKVQHPAVMFGWRDAIASLLFKKGD
Sbjct: 61  ISSTPSLRIGLASTVPKVQHPAVMFGWRDAIASLLFKKGD 100
[Close]
BLAST of Spo15546.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BSI0_BETVU (Ribosomal protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g194360 PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 3.300e-40
Identity = 83/100 (83.00%), Postives = 91/100 (91.00%), Query Frame = 1 

		  

Query: 1   MKVRSSVRKMCEFCKVVKRRGRVYVVCSAKPKHKQRQGFTTFAHEGPLINTSGDISSKPL 60
           MKVRSSVRKMCEFCKVVKRRG VYV+CSAKPKHKQRQGF++FAHEGPLINTS DISSKPL
Sbjct: 232 MKVRSSVRKMCEFCKVVKRRGCVYVLCSAKPKHKQRQGFSSFAHEGPLINTSADISSKPL 291

Query: 61  ISSTPSLRIGLASTVPKVQHPAVMFGWRDAIASLLFKKGD 101
           IS++PSLRIGL S VPK+  P  +FGWRDAIASLLFKK +
Sbjct: 292 ISNSPSLRIGLTSIVPKLHQPTAVFGWRDAIASLLFKKSN 331
[Close]
BLAST of Spo15546.1 vs. UniProtKB/TrEMBL
Match: A5AX15_VITVI (Ribosomal protein OS=Vitis vinifera GN=VITISV_039227 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.400e-27
Identity = 61/98 (62.24%), Postives = 79/98 (80.61%), Query Frame = 1 

		  

Query: 1  MKVRSSVRKMCEFCKVVKRRGRVYVVCSAKPKHKQRQGFTTFAHEGPLINTSGDISSKPL 60
          MKVRSSV+KMCE+C+ VKRRGRVYV+C+A PKHKQRQG +TFAHEGPL   S ++++K  
Sbjct: 1  MKVRSSVKKMCEYCRTVKRRGRVYVLCTANPKHKQRQGMSTFAHEGPLPPMSSEMNAKQE 60

Query: 61 ISSTPSLRIGLASTVPKVQHPAVMFGWRDAIASLLFKK 99
          IS    L+ GLAS +PK   P++M+GWR ++ASLLFK+
Sbjct: 61 ISXNHRLQGGLASIIPKKPEPSMMYGWRASLASLLFKQ 98
[Close]
BLAST of Spo15546.1 vs. UniProtKB/TrEMBL
Match: D7TC22_VITVI (Ribosomal protein OS=Vitis vinifera GN=VIT_11s0016g05390 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.400e-27
Identity = 61/98 (62.24%), Postives = 79/98 (80.61%), Query Frame = 1 

		  

Query: 1  MKVRSSVRKMCEFCKVVKRRGRVYVVCSAKPKHKQRQGFTTFAHEGPLINTSGDISSKPL 60
          MKVRSSV+KMCE+C+ VKRRGRVYV+C+A PKHKQRQG +TFAHEGPL   S ++++K  
Sbjct: 1  MKVRSSVKKMCEYCRTVKRRGRVYVLCTANPKHKQRQGMSTFAHEGPLPPMSSEMNAKQE 60

Query: 61 ISSTPSLRIGLASTVPKVQHPAVMFGWRDAIASLLFKK 99
          IS    L+ GLAS +PK   P++M+GWR ++ASLLFK+
Sbjct: 61 ISRNHRLQGGLASIIPKKPEPSMMYGWRASLASLLFKQ 98
[Close]
BLAST of Spo15546.1 vs. UniProtKB/TrEMBL
Match: W9QKG1_9ROSA (Ribosomal protein OS=Morus notabilis GN=L484_003789 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 7.800e-26
Identity = 58/100 (58.00%), Postives = 75/100 (75.00%), Query Frame = 1 

		  

Query: 1   MKVRSSVRKMCEFCKVVKRRGRVYVVCSAKPKHKQRQGFTTFAHEGPLINTSGDISSKPL 60
           MKVRSSV+KMCEFC+ VKRRGRVYV+C+A PKHKQRQG +T A+EGPL + S    SKP 
Sbjct: 1   MKVRSSVKKMCEFCRTVKRRGRVYVLCTANPKHKQRQGVSTLAYEGPLPSQSSGTVSKPE 60

Query: 61  ISSTPSLRIGLASTVPKVQHPAVMFGWRDAIASLLFKKGD 101
           ++    + +GLAS +PK   P++  GWR  +ASLLFK+ +
Sbjct: 61  VNVNQGVPVGLASLIPKKTEPSMTLGWRMGLASLLFKRSN 100
[Close]
BLAST of Spo15546.1 vs. ExPASy Swiss-Prot
Match: RL36_LACRD (50S ribosomal protein L36 OS=Lactobacillus reuteri (strain DSM 20016) GN=rpmJ PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.700e-10
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 1 

		  

Query: 1  MKVRSSVRKMCEFCKVVKRRGRVYVVCSAKPKHKQRQG 39
          MKVR SV+KMCE CK+VKR GRV V+CSA PKHKQRQG
Sbjct: 1  MKVRPSVKKMCEHCKIVKRNGRVMVICSANPKHKQRQG 38
[Close]
BLAST of Spo15546.1 vs. ExPASy Swiss-Prot
Match: RL36_LACRJ (50S ribosomal protein L36 OS=Lactobacillus reuteri (strain JCM 1112) GN=rpmJ PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.700e-10
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 1 

		  

Query: 1  MKVRSSVRKMCEFCKVVKRRGRVYVVCSAKPKHKQRQG 39
          MKVR SV+KMCE CK+VKR GRV V+CSA PKHKQRQG
Sbjct: 1  MKVRPSVKKMCEHCKIVKRNGRVMVICSANPKHKQRQG 38
[Close]
BLAST of Spo15546.1 vs. ExPASy Swiss-Prot
Match: RL36_LACC3 (50S ribosomal protein L36 OS=Lactobacillus casei (strain ATCC 334) GN=rpmJ PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.300e-10
Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 1 

		  

Query: 1  MKVRSSVRKMCEFCKVVKRRGRVYVVCSAKPKHKQRQG 39
          MKVR SV+KMCE CKVV+R+GRV ++CSA PKHKQRQG
Sbjct: 1  MKVRPSVKKMCEHCKVVRRKGRVMIICSANPKHKQRQG 38
[Close]
BLAST of Spo15546.1 vs. ExPASy Swiss-Prot
Match: RL36_LACCB (50S ribosomal protein L36 OS=Lactobacillus casei (strain BL23) GN=rpmJ PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.300e-10
Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 1 

		  

Query: 1  MKVRSSVRKMCEFCKVVKRRGRVYVVCSAKPKHKQRQG 39
          MKVR SV+KMCE CKVV+R+GRV ++CSA PKHKQRQG
Sbjct: 1  MKVRPSVKKMCEHCKVVRRKGRVMIICSANPKHKQRQG 38
[Close]
BLAST of Spo15546.1 vs. ExPASy Swiss-Prot
Match: RL36_LACBA (50S ribosomal protein L36 OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=rpmJ PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.000e-10
Identity = 29/38 (76.32%), Postives = 33/38 (86.84%), Query Frame = 1 

		  

Query: 1  MKVRSSVRKMCEFCKVVKRRGRVYVVCSAKPKHKQRQG 39
          MKVR SV+ MCE CKV+KR+GRV V+CSA PKHKQRQG
Sbjct: 1  MKVRPSVKPMCEHCKVIKRKGRVMVICSANPKHKQRQG 38
[Close]
BLAST of Spo15546.1 vs. TAIR (Arabidopsis)
Match: AT5G20180.1 (Ribosomal protein L36)

HSP 1 Score: 111.3 bits (277), Expect = 3.500e-25
Identity = 58/103 (56.31%), Postives = 74/103 (71.84%), Query Frame = 1 

		  

Query: 1   MKVRSSVRKMCEFCKVVKRRGRVYVVCSAKPKHKQRQGFTTFAHEG--PLINTSGDISSK 60
           MKVRSSV+KMCEFCK VKRRGRVYV+CS+ PKHKQRQGF++FA+EG  P    +  I+S+
Sbjct: 1   MKVRSSVKKMCEFCKTVKRRGRVYVICSSNPKHKQRQGFSSFAYEGITPSPLFAEPIASQ 60

Query: 61  PLIS-STPSLRIGLASTVPKVQHPAVMFGWRDAIASLLFKKGD 101
            L+      +  GLAS + K   P   FGWR  +AS+LFK+G+
Sbjct: 61  ELVRLPGQGVSAGLASLLHKRPMPTAYFGWRSGLASILFKQGN 103
[Close]
BLAST of Spo15546.1 vs. TAIR (Arabidopsis)
Match: ATCG00760.1 (ribosomal protein L36)

HSP 1 Score: 56.2 bits (134), Expect = 1.300e-8
Identity = 24/38 (63.16%), Postives = 34/38 (89.47%), Query Frame = 1 

		  

Query: 1  MKVRSSVRKMCEFCKVVKRRGRVYVVCSAKPKHKQRQG 39
          MK+R+SVRK+CE C++++RRGR+ V+CS  P+HKQRQG
Sbjct: 1  MKIRASVRKICEKCRLIRRRGRIIVICS-NPRHKQRQG 37
The following BLAST results are available for this feature:
BLAST of Spo15546.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902175440|gb|KNA08596.1|1.9e-49100.hypothetical protein SOVF_1612... [more]
gi|870850792|gb|KMT02858.1|4.7e-4083.0hypothetical protein BVRB_8g19... [more]
gi|225445521|ref|XP_002285234.1|2.0e-2762.2PREDICTED: uncharacterized pro... [more]
gi|147794982|emb|CAN71764.1|2.0e-2762.2hypothetical protein VITISV_03... [more]
gi|703076085|ref|XP_010090249.1|1.1e-2558.050S ribosomal protein L36 [Mor... [more]
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BLAST of Spo15546.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QPZ2_SPIOL1.3e-49100.Ribosomal protein OS=Spinacia ... [more]
A0A0J8BSI0_BETVU3.3e-4083.0Ribosomal protein OS=Beta vulg... [more]
A5AX15_VITVI1.4e-2762.2Ribosomal protein OS=Vitis vin... [more]
D7TC22_VITVI1.4e-2762.2Ribosomal protein OS=Vitis vin... [more]
W9QKG1_9ROSA7.8e-2658.0Ribosomal protein OS=Morus not... [more]
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BLAST of Spo15546.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RL36_LACRD1.7e-1078.950S ribosomal protein L36 OS=L... [more]
RL36_LACRJ1.7e-1078.950S ribosomal protein L36 OS=L... [more]
RL36_LACC32.3e-1076.350S ribosomal protein L36 OS=L... [more]
RL36_LACCB2.3e-1076.350S ribosomal protein L36 OS=L... [more]
RL36_LACBA5.0e-1076.350S ribosomal protein L36 OS=L... [more]
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BLAST of Spo15546.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT5G20180.13.5e-2556.3Ribosomal protein L36[more]
ATCG00760.11.3e-863.1ribosomal protein L36[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000473Ribosomal protein L36HAMAPMF_00251Ribosomal_L36coord: 1..38
score: 1
IPR000473Ribosomal protein L36PANTHERPTHR18804FAMILY NOT NAMEDcoord: 1..65
score: 9.2
IPR000473Ribosomal protein L36PFAMPF00444Ribosomal_L36coord: 1..38
score: 7.1
IPR000473Ribosomal protein L36TIGRFAMsTIGR01022TIGR01022coord: 1..38
score: 3.4
IPR000473Ribosomal protein L36PROSITEPS00828RIBOSOMAL_L36coord: 11..37
scor
IPR000473Ribosomal protein L36unknownSSF57840Ribosomal protein L36coord: 1..38
score: 2.49
NoneNo IPR availablePANTHERPTHR18804:SF7RIBOSOMAL PROTEINcoord: 1..65
score: 9.2

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0000028 ribosomal small subunit assembly
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0009651 response to salt stress
biological_process GO:0006457 protein folding
biological_process GO:0010498 proteasomal protein catabolic process
biological_process GO:0006096 glycolytic process
biological_process GO:0006094 gluconeogenesis
biological_process GO:0009409 response to cold
biological_process GO:0016070 RNA metabolic process
biological_process GO:0007010 cytoskeleton organization
cellular_component GO:0005829 cytosol
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005840 ribosome
cellular_component GO:0044424 intracellular part
cellular_component GO:0005622 intracellular
molecular_function GO:0005525 GTP binding
molecular_function GO:0051082 unfolded protein binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003924 GTPase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0016779 nucleotidyltransferase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003746 translation elongation factor activity
RNA-Seq Expression