Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GGCAAGTAAAATGGGACAGACGGACAAATCAGAATCATTAGTCATTATCAAACTCATTACCGTCCCTTCTTACCTTCCCCCCTCCTTCCCCGCACACGGCGCACCCCTATATAATCAATCCTTCTCTCTCTTCTTTATAATCATCGCAAACCCAGAAATATTAATTTATTCCATTTAAATAAAAAATCAATTCTTTTTCTTTTTTCTCTCTCAAAAAGATGCTACTCCGAAGCGCATCAACGCCTCTGCTAAACTCATGGGCACCGAACCACTCTCCTTCCGTACCATCCACCCCAACTTCTCCCGAACCTAAATCTTGCCTCGCCATTACGACGTCGTCTTGTACCGCTAAGCTTAGCCGAGCTTCTTCGGAATCAGATCTCCGCCACCTCACCGCCGTTTCCCCTAAACGAAGCCCTTTTGCGTCGGGTATTGGGTCGGATTCTGGGACGGGATCGAGGTTGTTGATGAACGGTGGGTTGGGTTTGAGAGAGAGGGTGGTTGAGGAGGAAGAAGAGGAGAGTGAGGTGGAGGAGGAAAGAGATTCCGACGGTGGTGGGTGGGGTAAAGGTGGAGGATCTGACCGTGGAAATGGGTTCGGGTTTGGGTTTGGGTTCGGAAGTTGGGATTCAAACAATGGGGGTGGAGAGGGTACCGATTTGTATTATCAGAATATGATTGAGGCTAATCCTGGAAATTCACTCCTTTTAGGCAATTATGCTAAGTTCTTGAAAGAGGTAATTCTTATTTCTTTAATCTTCAAATGATTAACTTTCATTTTTTTTATGAGATCTGTTTTGAGATGAATGTATTAAGTTATTGTGAAACCATGTCATATAATAATTTTCCGGGGTTGGTAACGTAGCATGATACTGTTTTCAAGGGCTTGGTAATGTAGCATTATACTGATTTTAGATTAATCGATTAATTGCAAGACGGTCTCAAGAAAAAGTTCAATGAAATTTTATTTGTTTCGATTTGTAACTTGGTTAGGATTCAATGAGATTTGATATACTTTATTACCAGAAATGTGATAATTTGATGGGTCGAGAAAAATCATGTAGATCCGATTTAATAGTCGATTCATTACTGCTTTTAAGTTATTGTGAGAGTGTCTCAGAAATCATAGAGATCCTTTCTAATAGCCGGTTTATTAGTGTGTATAATTCGAGATTTTTATGGTGTTTGTAATATACCAAAATCTTGTGGTTTACTTATGGTTAGTTGTGTTTCTGACGTGTGAAATTGGGATTGGAAACAGGTTAAAGGCGATTATGCAAAAGCAGAAGAGTATTGTGGAAGAGCAATACTTGCAAATCCCGGGGATGGAAATGTTTTATCCCTGTATGCAGATTTGATTTGGCAAACTCAGAAAGACTCTTTAAGGGCTGAAAGTTATTTTGATCAGGCAGTCAAAGCAGCTCCTGATGACTGGTGAGTCTGCCTTTACCGCGTATTCCAGCTTGTTCTTGTGTAGTCGTAGGATTTAGTTATCACGTTACTAATTCAAATGAAAGTATCGAGTTTTTAAAAGATTTGATGGGAGTTAACTAACATTGAATTTTCGTGTTGCAGTTACGTTCTAGCATCGTATGCACACTTCCTTTGGGATGCAGAAGACGACGAGGAAGAAGAAGAAGTTACAAAACAGTCTAGCATTCCTTCGTTGCCATTGCCGTTCTTTCAAGGGATTGTTCCTCCTTTACCACCCCCTTTAGCTGCTGCTTCTTAAAGAGACAGATTCAAGGCTTCCTTCCTTACCCTCTCTTGTATAATTATAGTACAGATGTAACTCTTTAGCCGGTTTATTCTATAACCCATTTTGCTAACCTGAGAAATAATTGGTGTTCCTTAACTATTAGTATTATGTTAACCCGTAGTTTCAGGCTGCTCCTTCCTCGGTTTTAACTCAAATCATGTACAACTGTACGAGTAATTCCTTGTGAAAGTTGTGCTTATACTATATCATGTGTTAATCAATGAATAGAGCTTTTCAGTGTCACTTGTTTATGTGCATTTTTAATTTTTATACATGTCTGTTGTCTGTTAGTTAGTGCTGCAGCCTCCC GGCAAGTAAAATGGGACAGACGGACAAATCAGAATCATTAGTCATTATCAAACTCATTACCGTCCCTTCTTACCTTCCCCCCTCCTTCCCCGCACACGGCGCACCCCTATATAATCAATCCTTCTCTCTCTTCTTTATAATCATCGCAAACCCAGAAATATTAATTTATTCCATTTAAATAAAAAATCAATTCTTTTTCTTTTTTCTCTCTCAAAAAGATGCTACTCCGAAGCGCATCAACGCCTCTGCTAAACTCATGGGCACCGAACCACTCTCCTTCCGTACCATCCACCCCAACTTCTCCCGAACCTAAATCTTGCCTCGCCATTACGACGTCGTCTTGTACCGCTAAGCTTAGCCGAGCTTCTTCGGAATCAGATCTCCGCCACCTCACCGCCGTTTCCCCTAAACGAAGCCCTTTTGCGTCGGGTATTGGGTCGGATTCTGGGACGGGATCGAGGTTGTTGATGAACGGTGGGTTGGGTTTGAGAGAGAGGGTGGTTGAGGAGGAAGAAGAGGAGAGTGAGGTGGAGGAGGAAAGAGATTCCGACGGTGGTGGGTGGGGTAAAGGTGGAGGATCTGACCGTGGAAATGGGTTCGGGTTTGGGTTTGGGTTCGGAAGTTGGGATTCAAACAATGGGGGTGGAGAGGGTACCGATTTGTATTATCAGAATATGATTGAGGCTAATCCTGGAAATTCACTCCTTTTAGGCAATTATGCTAAGTTCTTGAAAGAGGTTAAAGGCGATTATGCAAAAGCAGAAGAGTATTGTGGAAGAGCAATACTTGCAAATCCCGGGGATGGAAATGTTTTATCCCTGTATGCAGATTTGATTTGGCAAACTCAGAAAGACTCTTTAAGGGCTGAAAGTTATTTTGATCAGGCAGTCAAAGCAGCTCCTGATGACTGTTACGTTCTAGCATCGTATGCACACTTCCTTTGGGATGCAGAAGACGACGAGGAAGAAGAAGAAGTTACAAAACAGTCTAGCATTCCTTCGTTGCCATTGCCGTTCTTTCAAGGGATTGTTCCTCCTTTACCACCCCCTTTAGCTGCTGCTTCTTAAAGAGACAGATTCAAGGCTTCCTTCCTTACCCTCTCTTGTATAATTATAGTACAGATGTAACTCTTTAGCCGGTTTATTCTATAACCCATTTTGCTAACCTGAGAAATAATTGGTGTTCCTTAACTATTAGTATTATGTTAACCCGTAGTTTCAGGCTGCTCCTTCCTCGGTTTTAACTCAAATCATGTACAACTGTACGAGTAATTCCTTGTGAAAGTTGTGCTTATACTATATCATGTGTTAATCAATGAATAGAGCTTTTCAGTGTCACTTGTTTATGTGCATTTTTAATTTTTATACATGTCTGTTGTCTGTTAGTTAGTGCTGCAGCCTCCC ATGCTACTCCGAAGCGCATCAACGCCTCTGCTAAACTCATGGGCACCGAACCACTCTCCTTCCGTACCATCCACCCCAACTTCTCCCGAACCTAAATCTTGCCTCGCCATTACGACGTCGTCTTGTACCGCTAAGCTTAGCCGAGCTTCTTCGGAATCAGATCTCCGCCACCTCACCGCCGTTTCCCCTAAACGAAGCCCTTTTGCGTCGGGTATTGGGTCGGATTCTGGGACGGGATCGAGGTTGTTGATGAACGGTGGGTTGGGTTTGAGAGAGAGGGTGGTTGAGGAGGAAGAAGAGGAGAGTGAGGTGGAGGAGGAAAGAGATTCCGACGGTGGTGGGTGGGGTAAAGGTGGAGGATCTGACCGTGGAAATGGGTTCGGGTTTGGGTTTGGGTTCGGAAGTTGGGATTCAAACAATGGGGGTGGAGAGGGTACCGATTTGTATTATCAGAATATGATTGAGGCTAATCCTGGAAATTCACTCCTTTTAGGCAATTATGCTAAGTTCTTGAAAGAGGTTAAAGGCGATTATGCAAAAGCAGAAGAGTATTGTGGAAGAGCAATACTTGCAAATCCCGGGGATGGAAATGTTTTATCCCTGTATGCAGATTTGATTTGGCAAACTCAGAAAGACTCTTTAAGGGCTGAAAGTTATTTTGATCAGGCAGTCAAAGCAGCTCCTGATGACTGTTACGTTCTAGCATCGTATGCACACTTCCTTTGGGATGCAGAAGACGACGAGGAAGAAGAAGAAGTTACAAAACAGTCTAGCATTCCTTCGTTGCCATTGCCGTTCTTTCAAGGGATTGTTCCTCCTTTACCACCCCCTTTAGCTGCTGCTTCTTAA MLLRSASTPLLNSWAPNHSPSVPSTPTSPEPKSCLAITTSSCTAKLSRASSESDLRHLTAVSPKRSPFASGIGSDSGTGSRLLMNGGLGLRERVVEEEEEESEVEEERDSDGGGWGKGGGSDRGNGFGFGFGFGSWDSNNGGGEGTDLYYQNMIEANPGNSLLLGNYAKFLKEVKGDYAKAEEYCGRAILANPGDGNVLSLYADLIWQTQKDSLRAESYFDQAVKAAPDDCYVLASYAHFLWDAEDDEEEEEVTKQSSIPSLPLPFFQGIVPPLPPPLAAAS Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo15551.1 vs. NCBI nr
Match: gi|902236227|gb|KNA24274.1| (hypothetical protein SOVF_017110 [Spinacia oleracea]) HSP 1 Score: 547.4 bits (1409), Expect = 1.500e-152 Identity = 282/282 (100.00%), Postives = 282/282 (100.00%), Query Frame = 1
BLAST of Spo15551.1 vs. NCBI nr
Match: gi|731353263|ref|XP_010687971.1| (PREDICTED: uncharacterized protein LOC104902021 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 361.3 bits (926), Expect = 1.500e-96 Identity = 212/292 (72.60%), Postives = 238/292 (81.51%), Query Frame = 1
BLAST of Spo15551.1 vs. NCBI nr
Match: gi|225445531|ref|XP_002285275.1| (PREDICTED: uncharacterized protein LOC100257716 [Vitis vinifera]) HSP 1 Score: 230.7 bits (587), Expect = 3.100e-57 Identity = 157/307 (51.14%), Postives = 189/307 (61.56%), Query Frame = 1
BLAST of Spo15551.1 vs. NCBI nr
Match: gi|951010902|ref|XP_014509662.1| (PREDICTED: uncharacterized protein LOC106768826 [Vigna radiata var. radiata]) HSP 1 Score: 229.9 bits (585), Expect = 5.300e-57 Identity = 156/302 (51.66%), Postives = 187/302 (61.92%), Query Frame = 1
BLAST of Spo15551.1 vs. NCBI nr
Match: gi|1009167080|ref|XP_015901930.1| (PREDICTED: uncharacterized protein LOC107434926 [Ziziphus jujuba]) HSP 1 Score: 228.4 bits (581), Expect = 1.600e-56 Identity = 158/334 (47.31%), Postives = 198/334 (59.28%), Query Frame = 1
BLAST of Spo15551.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RZB7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_017110 PE=4 SV=1) HSP 1 Score: 547.4 bits (1409), Expect = 1.100e-152 Identity = 282/282 (100.00%), Postives = 282/282 (100.00%), Query Frame = 1
BLAST of Spo15551.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BNA7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g194300 PE=4 SV=1) HSP 1 Score: 361.3 bits (926), Expect = 1.100e-96 Identity = 212/292 (72.60%), Postives = 238/292 (81.51%), Query Frame = 1
BLAST of Spo15551.1 vs. UniProtKB/TrEMBL
Match: D7TC26_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g05430 PE=4 SV=1) HSP 1 Score: 230.7 bits (587), Expect = 2.200e-57 Identity = 157/307 (51.14%), Postives = 189/307 (61.56%), Query Frame = 1
BLAST of Spo15551.1 vs. UniProtKB/TrEMBL
Match: I1MU80_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_17G113600 PE=4 SV=1) HSP 1 Score: 228.4 bits (581), Expect = 1.100e-56 Identity = 149/289 (51.56%), Postives = 179/289 (61.94%), Query Frame = 1
BLAST of Spo15551.1 vs. UniProtKB/TrEMBL
Match: A0A0S3R6U8_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G432900 PE=4 SV=1) HSP 1 Score: 226.9 bits (577), Expect = 3.100e-56 Identity = 152/302 (50.33%), Postives = 186/302 (61.59%), Query Frame = 1
BLAST of Spo15551.1 vs. TAIR (Arabidopsis)
Match: AT5G20190.1 (Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 196.4 bits (498), Expect = 2.300e-50 Identity = 137/309 (44.34%), Postives = 178/309 (57.61%), Query Frame = 1
BLAST of Spo15551.1 vs. TAIR (Arabidopsis)
Match: AT1G80130.1 (Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 162.5 bits (410), Expect = 3.700e-40 Identity = 119/297 (40.07%), Postives = 147/297 (49.49%), Query Frame = 1
BLAST of Spo15551.1 vs. TAIR (Arabidopsis)
Match: AT4G32340.1 (Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 145.6 bits (366), Expect = 4.700e-35 Identity = 105/253 (41.50%), Postives = 138/253 (54.55%), Query Frame = 1
BLAST of Spo15551.1 vs. TAIR (Arabidopsis)
Match: AT4G17940.1 (Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 136.3 bits (342), Expect = 2.800e-32 Identity = 106/275 (38.55%), Postives = 142/275 (51.64%), Query Frame = 1
BLAST of Spo15551.1 vs. TAIR (Arabidopsis)
Match: AT1G07280.1 (Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 93.6 bits (231), Expect = 2.100e-19 Identity = 45/103 (43.69%), Postives = 61/103 (59.22%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo15551.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo15551.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo15551.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo15551.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
|