Spo15568 (gene)

Overview
NameSpo15568
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionTo encode a PR protein, Belongs to the plant thionin family with the following members:, putative
LocationSpoScf_00184 : 133423 .. 134710 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTGGCTCATTCGCAACTACAAGAAACACACGGGGTAATGACAACCGTTTTCTCAGTAGGGATTAATTAATGCTAATGTTAGCGTGAGCTAATAAACCAACCCACCAATTGTTTCACATGGCCAAACACCTAAATGGTTCACATGTGACTCTATAGTACTAGTATATTATAGCGGCCTTGGCCCTTAGTCCCCTCACCCAATAGTTCATTGCCTTTTAAGTTTTAACCTCAAAGCCATCAAGAGAAAGAGAGAGAAGCTAAGAAGATGAACTTCAAGAAAACAAAATCCTTAATTACCTCATTATTGTTGCTAATCATGGGGTTTAGCATAATGGCAAGAAAATGCAATGCAACAACATTCCAAGAGTGTTATATACCATGTTACATACTTTGTGCTATTCAACCAACTCACACTCTTTCTTATTGTGCCTTTGAGTGTCTTAGGGATTGTATTATCCCTACTAACAATACTCATGTCACTTCCTTCCATTTTTGCAATCTTGGGTGTGCTTCTTCTCATTGCACCAATATTAGCACCCTCAAAAAACCAGGTATATACTTTTTTTACTTTAAAGTCGGGTTTTTTCTTTTTTATTTGGTACGTGTTATAAACACTGAAAGAAAAATAACGTTAATGTCCCCATAATAAATGAGAATTGACCTTTAATCATATAGACACGTAGTAGTTAAAGTAAGGGGTTTTTGAATTAAGGGTTCCTTATTTAGTGTTCGAGCTGTGTTTTTTCTTCGATCTTCTTCCGTGGTAGTGATTATGGACTTATATCGTATGTTTTTCTGTTATTATGGGACATGCGGTATGTTTTTGTTTCCAATCGAGTCTAAGTAATGTCAATAGGTACATTTTTTTTAATTTTATTTTGTGGGATGGATATCTAACCAAATAGCGTTTTGATTGAACTTACAGGTGGAAAGGAAGTAGAAGGCTGTGTTAGATCTTGCAACGGAGTTTGTGAGAAGAACTACTTGAATAACGTGACTCCATAAGTCAATAACAAGTCTTTTCTTGATGCTTATAATTAATTCATTTTGCTTAATTTATCTATTTTTTTTCCCTTTTTATAGAAAATGGAAAAGGGTAAGAATTTAACGTTGGATTTGGGTAGTGTGTGACTGTTGCTCGTGATTCTATAATTAAATGTAACGCAACTGTTGTTATTTTGTCAACGTAACTTCTTGAGTTACTTAATTTCTATGATTAAGTGGAAATTTAAGTATTCTCTCCGTCTCTTTTTGTTCTTTTTGTTTGGTAATTTTCACGTGTTTTAAC

mRNA sequence

AGTGGCTCATTCGCAACTACAAGAAACACACGGGGTAATGACAACCGTTTTCTCAGTAGGGATTAATTAATGCTAATGTTAGCGTGAGCTAATAAACCAACCCACCAATTGTTTCACATGGCCAAACACCTAAATGGTTCACATGTGACTCTATAGTACTAGTATATTATAGCGGCCTTGGCCCTTAGTCCCCTCACCCAATAGTTCATTGCCTTTTAAGTTTTAACCTCAAAGCCATCAAGAGAAAGAGAGAGAAGCTAAGAAGATGAACTTCAAGAAAACAAAATCCTTAATTACCTCATTATTGTTGCTAATCATGGGGTTTAGCATAATGGCAAGAAAATGCAATGCAACAACATTCCAAGAGTGTTATATACCATGTTACATACTTTGTGCTATTCAACCAACTCACACTCTTTCTTATTGTGCCTTTGAGTGTCTTAGGGATTGTATTATCCCTACTAACAATACTCATGTCACTTCCTTCCATTTTTGCAATCTTGGGTGTGCTTCTTCTCATTGCACCAATATTAGCACCCTCAAAAAACCAGGTGGAAAGGAAGTAGAAGGCTGTGTTAGATCTTGCAACGGAGTTTGTGAGAAGAACTACTTGAATAACGTGACTCCATAAGTCAATAACAAGTCTTTTCTTGATGCTTATAATTAATTCATTTTGCTTAATTTATCTATTTTTTTTCCCTTTTTATAGAAAATGGAAAAGGGTAAGAATTTAACGTTGGATTTGGGTAGTGTGTGACTGTTGCTCGTGATTCTATAATTAAATGTAACGCAACTGTTGTTATTTTGTCAACGTAACTTCTTGAGTTACTTAATTTCTATGATTAAGTGGAAATTTAAGTATTCTCTCCGTCTCTTTTTGTTCTTTTTGTTTGGTAATTTTCACGTGTTTTAAC

Coding sequence (CDS)

ATGAACTTCAAGAAAACAAAATCCTTAATTACCTCATTATTGTTGCTAATCATGGGGTTTAGCATAATGGCAAGAAAATGCAATGCAACAACATTCCAAGAGTGTTATATACCATGTTACATACTTTGTGCTATTCAACCAACTCACACTCTTTCTTATTGTGCCTTTGAGTGTCTTAGGGATTGTATTATCCCTACTAACAATACTCATGTCACTTCCTTCCATTTTTGCAATCTTGGGTGTGCTTCTTCTCATTGCACCAATATTAGCACCCTCAAAAAACCAGGTGGAAAGGAAGTAGAAGGCTGTGTTAGATCTTGCAACGGAGTTTGTGAGAAGAACTACTTGAATAACGTGACTCCATAA

Protein sequence

MNFKKTKSLITSLLLLIMGFSIMARKCNATTFQECYIPCYILCAIQPTHTLSYCAFECLRDCIIPTNNTHVTSFHFCNLGCASSHCTNISTLKKPGGKEVEGCVRSCNGVCEKNYLNNVTP
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo15568.1Spo15568.1mRNA


Homology
BLAST of Spo15568.1 vs. NCBI nr
Match: gi|870865864|gb|KMT16902.1| (hypothetical protein BVRB_2g043750 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 213.4 bits (542), Expect = 2.200e-52
Identity = 95/104 (91.35%), Postives = 99/104 (95.19%), Query Frame = 1

		  

Query: 18  MGFSIMARKCNATTFQECYIPCYILCAIQPTHTLSYCAFECLRDCIIPTNNTHVTSFHFC 77
           MGFSIMARKCNATTFQECYIPCYILCAIQPTHTLSYCAFECLRDCIIP+NNT V SFHFC
Sbjct: 1   MGFSIMARKCNATTFQECYIPCYILCAIQPTHTLSYCAFECLRDCIIPSNNTFVNSFHFC 60

Query: 78  NLGCASSHCTNISTLKKPGGKEVEGCVRSCNGVCEKNYLNNVTP 122
           NLGCASSHCT IST K PGGKEVEGCVRSC+GVC+KNYLNN+TP
Sbjct: 61  NLGCASSHCTKISTRKNPGGKEVEGCVRSCSGVCQKNYLNNLTP 104

BLAST of Spo15568.1 vs. NCBI nr
Match: gi|1009112637|ref|XP_015869439.1| (PREDICTED: thionin-like protein 2 [Ziziphus jujuba])

HSP 1 Score: 105.5 bits (262), Expect = 6.500e-20
Identity = 47/106 (44.34%), Postives = 69/106 (65.09%), Query Frame = 1

		  

Query: 13  LLLLIMGFSIMARKCNATTFQECYIPCYILCAIQPTHTLSYCAFECLRDCIIPTNNT--- 72
           ++  ++G  +M     + +F  CY  C++LC I PT+T S CA +CL++CI+P ++T   
Sbjct: 9   MVFAVVGLLLMVPSSTSASFASCYGGCFLLCVIIPTNTASSCALQCLKNCIVPPSSTLQL 68

Query: 73  -HVTSFHFCNLGCASSHCTNISTLKKPGGKEVEGCVRSCNGVCEKN 115
               S +FC LGCASS C+N ST + P  K+VEGCV SC+G+C KN
Sbjct: 69  SETNSNYFCKLGCASSLCSNYSTKQNPNSKKVEGCVDSCSGICTKN 114

BLAST of Spo15568.1 vs. NCBI nr
Match: gi|719980525|ref|XP_010249827.1| (PREDICTED: thionin-like protein 2 [Nelumbo nucifera])

HSP 1 Score: 104.4 bits (259), Expect = 1.400e-19
Identity = 46/109 (42.20%), Postives = 74/109 (67.89%), Query Frame = 1

		  

Query: 10  ITSLLLLIMGFSIMARKCNATTFQECYIPCYILCAIQPTHTLSYCAFECLRDCIIP---T 69
           +   L++IM   ++A +  A +F++CY+ C++LC I P  T   C+++CL++CI P   +
Sbjct: 6   VKGALVMIMVVGLVAGQTTADSFKDCYVKCFLLCLITPNTTALSCSWQCLKECITPPFLS 65

Query: 70  NNTHVTSFHFCNLGCASSHCTNISTLKKPGGKEVEGCVRSCNGVCEKNY 116
           ++ H    ++C+LGCASS CTN+ST KKPG ++VEGCV  C+ +C K Y
Sbjct: 66  DDAH----YYCSLGCASSLCTNLSTKKKPGAEDVEGCVNGCSRMCRKKY 110

BLAST of Spo15568.1 vs. NCBI nr
Match: gi|657943097|ref|XP_008353739.1| (PREDICTED: thionin-like protein 2 [Malus domestica])

HSP 1 Score: 103.2 bits (256), Expect = 3.200e-19
Identity = 47/102 (46.08%), Postives = 71/102 (69.61%), Query Frame = 1

		  

Query: 16  LIMGFSIMARKCNATTFQECYIPCYILCAIQPTHTLSYCAFECLRDCIIPT------NNT 75
           L++G  ++A + +A+ F+ CY  C+ILC I P H++SYC+F+CL+DCIIP+      +N 
Sbjct: 14  LVLGMLMLAGQSSAS-FKSCYESCFILCVITPNHSVSYCSFQCLKDCIIPSRSPFDHSNI 73

Query: 76  HVTSFHFCNLGCASSHCTNISTLKKPGGKEVEGCVRSCNGVC 112
           H  + +FC LGCASS C+N+ST + P  ++V GCV SC+  C
Sbjct: 74  HKDNVYFCKLGCASSLCSNLSTKQNPEVEKVGGCVDSCSKTC 114

BLAST of Spo15568.1 vs. NCBI nr
Match: gi|694353623|ref|XP_009358204.1| (PREDICTED: thionin-like protein 2 [Pyrus x bretschneideri])

HSP 1 Score: 103.2 bits (256), Expect = 3.200e-19
Identity = 47/102 (46.08%), Postives = 71/102 (69.61%), Query Frame = 1

		  

Query: 16  LIMGFSIMARKCNATTFQECYIPCYILCAIQPTHTLSYCAFECLRDCIIPT------NNT 75
           L++G  ++A + +A+ F+ CY  C+ILC I P H++SYC+F+CL+DCIIP+      +N 
Sbjct: 14  LVLGMLMLAGQSSAS-FKSCYESCFILCVITPNHSVSYCSFQCLKDCIIPSRSPLDHSNI 73

Query: 76  HVTSFHFCNLGCASSHCTNISTLKKPGGKEVEGCVRSCNGVC 112
           H  + +FC LGCASS C+N+ST + P  ++V GCV SC+  C
Sbjct: 74  HKDNVYFCKLGCASSLCSNLSTKQNPEVEKVGGCVDSCSETC 114

BLAST of Spo15568.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CTI8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g043750 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.500e-52
Identity = 95/104 (91.35%), Postives = 99/104 (95.19%), Query Frame = 1

		  

Query: 18  MGFSIMARKCNATTFQECYIPCYILCAIQPTHTLSYCAFECLRDCIIPTNNTHVTSFHFC 77
           MGFSIMARKCNATTFQECYIPCYILCAIQPTHTLSYCAFECLRDCIIP+NNT V SFHFC
Sbjct: 1   MGFSIMARKCNATTFQECYIPCYILCAIQPTHTLSYCAFECLRDCIIPSNNTFVNSFHFC 60

Query: 78  NLGCASSHCTNISTLKKPGGKEVEGCVRSCNGVCEKNYLNNVTP 122
           NLGCASSHCT IST K PGGKEVEGCVRSC+GVC+KNYLNN+TP
Sbjct: 61  NLGCASSHCTKISTRKNPGGKEVEGCVRSCSGVCQKNYLNNLTP 104

BLAST of Spo15568.1 vs. UniProtKB/TrEMBL
Match: F6HX25_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g04840 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 8.000e-17
Identity = 43/99 (43.43%), Postives = 63/99 (63.64%), Query Frame = 1

		  

Query: 16  LIMGFSIMARKCNATTFQECYIPCYILCAIQPTHTLSYCAFECLRDCIIPTNNTHVTSF- 75
           L+MG  +     +  +F++CY  C+I C I P +T   C+ ECL+DC+IP++   + +  
Sbjct: 14  LVMGMLVGQ---STASFKDCYTKCFIFCIITPNNTAFSCSLECLKDCVIPSHPLDIETAD 73

Query: 76  --HFCNLGCASSHCTNISTLKKPGGKEVEGCVRSCNGVC 112
             +FC LGCASS CTN+ST K P G++VE CV SC+  C
Sbjct: 74  TTYFCKLGCASSLCTNLSTKKNPAGEKVESCVNSCSNKC 109

BLAST of Spo15568.1 vs. UniProtKB/TrEMBL
Match: A0A059AI82_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J03010 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.800e-16
Identity = 50/109 (45.87%), Postives = 67/109 (61.47%), Query Frame = 1

		  

Query: 5   KTKSLITSLLLLIMGFSIMARKCNATTFQECYIPCYILCAIQPTHTLSYCAFECLRDCII 64
           K KS+   ++ L++G  +     N   FQ+CY  C+ILCAI P  TL  C+ ECL+DCII
Sbjct: 3   KVKSVF--MVCLVLGLFLGQSGAN---FQDCYPACFILCAITPGRTLFSCSVECLKDCII 62

Query: 65  PTNNTHV--TSFHFCNLGCASSHCTNISTLKKPGGKEVEGCVRSCNGVC 112
           P +++     + +FC LGCASS CTN+ST   P  K V GCV SC+  C
Sbjct: 63  PPSDSLSLRDTMYFCKLGCASSLCTNLSTKDNPREKRVAGCVNSCSKTC 106

BLAST of Spo15568.1 vs. UniProtKB/TrEMBL
Match: A0A161YIC6_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_016224 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 5.200e-16
Identity = 42/112 (37.50%), Postives = 63/112 (56.25%), Query Frame = 1

		  

Query: 23  MARKCNATTFQECYIPCYILCAIQPTHTLSYCAFECLRDCIIPTNNTHVTSFH------- 82
           + R  +  +F++CYI CY+ C I+P+ TL  C  +C ++CI+P  +++V S         
Sbjct: 10  VGRAGDTGSFKDCYIKCYVFCIIEPSQTLCSCTTQCFKNCILPGGDSNVASVQRRVDRVD 69

Query: 83  -------FCNLGCASSHCTNISTLKKPGGKEVEGCVRSCNGVCEKNYLNNVT 121
                  FC LGCASS C+NIST K P    +E CV SC+  C+  Y +N +
Sbjct: 70  DSNQNHAFCKLGCASSLCSNISTNKNPNADNMEKCVGSCSQKCDNTYSSNTS 121

BLAST of Spo15568.1 vs. UniProtKB/TrEMBL
Match: A0A067E0U5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033731mg PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 5.200e-16
Identity = 48/112 (42.86%), Postives = 68/112 (60.71%), Query Frame = 1

		  

Query: 7   KSLITSLLLLIMGFSIMARKCNATTFQECYIPCYILCAIQPTHTLSYCAFECLRDCIIPT 66
           K  + SLL++ +   ++  +  A  F+ECY  C+I+C I P  TL  CA +CL+DCI P 
Sbjct: 3   KRKVGSLLMVYLMTGLLVGQSQAA-FKECYETCFIICYITPGTTLGSCAAKCLKDCIFPP 62

Query: 67  NNTHVTSF----HFCNLGCASSHCTNISTLKKPGGKEVEGCVRSCNGVCEKN 115
              H  S     +FC LGCA+S CTN+S+   P G++VEGCV SC+  C K+
Sbjct: 63  K-LHTLSLQDTEYFCKLGCATSLCTNLSSKDNPAGEKVEGCVNSCSKSCSKD 112

BLAST of Spo15568.1 vs. ExPASy Swiss-Prot
Match: THNL2_ARATH (Thionin-like protein 2 OS=Arabidopsis thaliana GN=At1g12663 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.200e-9
Identity = 32/113 (28.32%), Postives = 57/113 (50.44%), Query Frame = 1

		  

Query: 9   LITSLLLLIMGFSIMARKCNATTFQECYIPCYILC-AIQPTHTLSYCAFECLRDCI---- 68
           L+  ++++++G  +         F+ECY  C + C A         C F C ++C+    
Sbjct: 2   LVAVMIVMVIGNLLAQTAAQKIPFKECYPACLVECKAGSKFPKYLKCPFTCTKECLQQPS 61

Query: 69  ---IPTNNTHVTSFHFCNLGCASSHCTNISTLKKPGGKEVEGCVRSCNGVCEK 114
              + +NN   + + FC LGCA+ HC ++S+++ P  + V  CV SC+  C K
Sbjct: 62  PPSVSSNNIDESDY-FCKLGCATYHCVSLSSIQNPNVERVSACVDSCSNKCTK 113

BLAST of Spo15568.1 vs. TAIR (Arabidopsis)
Match: AT1G12663.1 (Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.)

HSP 1 Score: 62.0 bits (149), Expect = 2.900e-10
Identity = 32/113 (28.32%), Postives = 57/113 (50.44%), Query Frame = 1

		  

Query: 9   LITSLLLLIMGFSIMARKCNATTFQECYIPCYILC-AIQPTHTLSYCAFECLRDCI---- 68
           L+  ++++++G  +         F+ECY  C + C A         C F C ++C+    
Sbjct: 2   LVAVMIVMVIGNLLAQTAAQKIPFKECYPACLVECKAGSKFPKYLKCPFTCTKECLQQPS 61

Query: 69  ---IPTNNTHVTSFHFCNLGCASSHCTNISTLKKPGGKEVEGCVRSCNGVCEK 114
              + +NN   + + FC LGCA+ HC ++S+++ P  + V  CV SC+  C K
Sbjct: 62  PPSVSSNNIDESDY-FCKLGCATYHCVSLSSIQNPNVERVSACVDSCSNKCTK 113

The following BLAST results are available for this feature:
BLAST of Spo15568.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|870865864|gb|KMT16902.1|2.2e-5291.3hypothetical protein BVRB_2g04... [more]
gi|1009112637|ref|XP_015869439.1|6.5e-2044.3PREDICTED: thionin-like protei... [more]
gi|719980525|ref|XP_010249827.1|1.4e-1942.2PREDICTED: thionin-like protei... [more]
gi|657943097|ref|XP_008353739.1|3.2e-1946.0PREDICTED: thionin-like protei... [more]
gi|694353623|ref|XP_009358204.1|3.2e-1946.0PREDICTED: thionin-like protei... [more]
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BLAST of Spo15568.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0J8CTI8_BETVU1.5e-5291.3Uncharacterized protein OS=Bet... [more]
F6HX25_VITVI8.0e-1743.4Putative uncharacterized prote... [more]
A0A059AI82_EUCGR1.8e-1645.8Uncharacterized protein OS=Euc... [more]
A0A161YIC6_DAUCA5.2e-1637.5Uncharacterized protein OS=Dau... [more]
A0A067E0U5_CITSI5.2e-1642.8Uncharacterized protein OS=Cit... [more]
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BLAST of Spo15568.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
THNL2_ARATH5.2e-928.3Thionin-like protein 2 OS=Arab... [more]
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BLAST of Spo15568.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT1G12663.12.9e-1028.3Predicted to encode a PR (path... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36312FAMILY NOT NAMEDcoord: 1..116
score: 8.9

RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo191750.66Barchart | Table