Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGTGGCTCATTCGCAACTACAAGAAACACACGGGGTAATGACAACCGTTTTCTCAGTAGGGATTAATTAATGCTAATGTTAGCGTGAGCTAATAAACCAACCCACCAATTGTTTCACATGGCCAAACACCTAAATGGTTCACATGTGACTCTATAGTACTAGTATATTATAGCGGCCTTGGCCCTTAGTCCCCTCACCCAATAGTTCATTGCCTTTTAAGTTTTAACCTCAAAGCCATCAAGAGAAAGAGAGAGAAGCTAAGAAGATGAACTTCAAGAAAACAAAATCCTTAATTACCTCATTATTGTTGCTAATCATGGGGTTTAGCATAATGGCAAGAAAATGCAATGCAACAACATTCCAAGAGTGTTATATACCATGTTACATACTTTGTGCTATTCAACCAACTCACACTCTTTCTTATTGTGCCTTTGAGTGTCTTAGGGATTGTATTATCCCTACTAACAATACTCATGTCACTTCCTTCCATTTTTGCAATCTTGGGTGTGCTTCTTCTCATTGCACCAATATTAGCACCCTCAAAAAACCAGGTATATACTTTTTTTACTTTAAAGTCGGGTTTTTTCTTTTTTATTTGGTACGTGTTATAAACACTGAAAGAAAAATAACGTTAATGTCCCCATAATAAATGAGAATTGACCTTTAATCATATAGACACGTAGTAGTTAAAGTAAGGGGTTTTTGAATTAAGGGTTCCTTATTTAGTGTTCGAGCTGTGTTTTTTCTTCGATCTTCTTCCGTGGTAGTGATTATGGACTTATATCGTATGTTTTTCTGTTATTATGGGACATGCGGTATGTTTTTGTTTCCAATCGAGTCTAAGTAATGTCAATAGGTACATTTTTTTTAATTTTATTTTGTGGGATGGATATCTAACCAAATAGCGTTTTGATTGAACTTACAGGTGGAAAGGAAGTAGAAGGCTGTGTTAGATCTTGCAACGGAGTTTGTGAGAAGAACTACTTGAATAACGTGACTCCATAAGTCAATAACAAGTCTTTTCTTGATGCTTATAATTAATTCATTTTGCTTAATTTATCTATTTTTTTTCCCTTTTTATAGAAAATGGAAAAGGGTAAGAATTTAACGTTGGATTTGGGTAGTGTGTGACTGTTGCTCGTGATTCTATAATTAAATGTAACGCAACTGTTGTTATTTTGTCAACGTAACTTCTTGAGTTACTTAATTTCTATGATTAAGTGGAAATTTAAGTATTCTCTCCGTCTCTTTTTGTTCTTTTTGTTTGGTAATTTTCACGTGTTTTAAC AGTGGCTCATTCGCAACTACAAGAAACACACGGGGTAATGACAACCGTTTTCTCAGTAGGGATTAATTAATGCTAATGTTAGCGTGAGCTAATAAACCAACCCACCAATTGTTTCACATGGCCAAACACCTAAATGGTTCACATGTGACTCTATAGTACTAGTATATTATAGCGGCCTTGGCCCTTAGTCCCCTCACCCAATAGTTCATTGCCTTTTAAGTTTTAACCTCAAAGCCATCAAGAGAAAGAGAGAGAAGCTAAGAAGATGAACTTCAAGAAAACAAAATCCTTAATTACCTCATTATTGTTGCTAATCATGGGGTTTAGCATAATGGCAAGAAAATGCAATGCAACAACATTCCAAGAGTGTTATATACCATGTTACATACTTTGTGCTATTCAACCAACTCACACTCTTTCTTATTGTGCCTTTGAGTGTCTTAGGGATTGTATTATCCCTACTAACAATACTCATGTCACTTCCTTCCATTTTTGCAATCTTGGGTGTGCTTCTTCTCATTGCACCAATATTAGCACCCTCAAAAAACCAGGTGGAAAGGAAGTAGAAGGCTGTGTTAGATCTTGCAACGGAGTTTGTGAGAAGAACTACTTGAATAACGTGACTCCATAAGTCAATAACAAGTCTTTTCTTGATGCTTATAATTAATTCATTTTGCTTAATTTATCTATTTTTTTTCCCTTTTTATAGAAAATGGAAAAGGGTAAGAATTTAACGTTGGATTTGGGTAGTGTGTGACTGTTGCTCGTGATTCTATAATTAAATGTAACGCAACTGTTGTTATTTTGTCAACGTAACTTCTTGAGTTACTTAATTTCTATGATTAAGTGGAAATTTAAGTATTCTCTCCGTCTCTTTTTGTTCTTTTTGTTTGGTAATTTTCACGTGTTTTAAC ATGAACTTCAAGAAAACAAAATCCTTAATTACCTCATTATTGTTGCTAATCATGGGGTTTAGCATAATGGCAAGAAAATGCAATGCAACAACATTCCAAGAGTGTTATATACCATGTTACATACTTTGTGCTATTCAACCAACTCACACTCTTTCTTATTGTGCCTTTGAGTGTCTTAGGGATTGTATTATCCCTACTAACAATACTCATGTCACTTCCTTCCATTTTTGCAATCTTGGGTGTGCTTCTTCTCATTGCACCAATATTAGCACCCTCAAAAAACCAGGTGGAAAGGAAGTAGAAGGCTGTGTTAGATCTTGCAACGGAGTTTGTGAGAAGAACTACTTGAATAACGTGACTCCATAA MNFKKTKSLITSLLLLIMGFSIMARKCNATTFQECYIPCYILCAIQPTHTLSYCAFECLRDCIIPTNNTHVTSFHFCNLGCASSHCTNISTLKKPGGKEVEGCVRSCNGVCEKNYLNNVTP Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo15568.1 vs. NCBI nr
Match: gi|870865864|gb|KMT16902.1| (hypothetical protein BVRB_2g043750 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 213.4 bits (542), Expect = 2.200e-52 Identity = 95/104 (91.35%), Postives = 99/104 (95.19%), Query Frame = 1
BLAST of Spo15568.1 vs. NCBI nr
Match: gi|1009112637|ref|XP_015869439.1| (PREDICTED: thionin-like protein 2 [Ziziphus jujuba]) HSP 1 Score: 105.5 bits (262), Expect = 6.500e-20 Identity = 47/106 (44.34%), Postives = 69/106 (65.09%), Query Frame = 1
BLAST of Spo15568.1 vs. NCBI nr
Match: gi|719980525|ref|XP_010249827.1| (PREDICTED: thionin-like protein 2 [Nelumbo nucifera]) HSP 1 Score: 104.4 bits (259), Expect = 1.400e-19 Identity = 46/109 (42.20%), Postives = 74/109 (67.89%), Query Frame = 1
BLAST of Spo15568.1 vs. NCBI nr
Match: gi|657943097|ref|XP_008353739.1| (PREDICTED: thionin-like protein 2 [Malus domestica]) HSP 1 Score: 103.2 bits (256), Expect = 3.200e-19 Identity = 47/102 (46.08%), Postives = 71/102 (69.61%), Query Frame = 1
BLAST of Spo15568.1 vs. NCBI nr
Match: gi|694353623|ref|XP_009358204.1| (PREDICTED: thionin-like protein 2 [Pyrus x bretschneideri]) HSP 1 Score: 103.2 bits (256), Expect = 3.200e-19 Identity = 47/102 (46.08%), Postives = 71/102 (69.61%), Query Frame = 1
BLAST of Spo15568.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CTI8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g043750 PE=4 SV=1) HSP 1 Score: 213.4 bits (542), Expect = 1.500e-52 Identity = 95/104 (91.35%), Postives = 99/104 (95.19%), Query Frame = 1
BLAST of Spo15568.1 vs. UniProtKB/TrEMBL
Match: F6HX25_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g04840 PE=4 SV=1) HSP 1 Score: 94.7 bits (234), Expect = 8.000e-17 Identity = 43/99 (43.43%), Postives = 63/99 (63.64%), Query Frame = 1
BLAST of Spo15568.1 vs. UniProtKB/TrEMBL
Match: A0A059AI82_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J03010 PE=4 SV=1) HSP 1 Score: 93.6 bits (231), Expect = 1.800e-16 Identity = 50/109 (45.87%), Postives = 67/109 (61.47%), Query Frame = 1
BLAST of Spo15568.1 vs. UniProtKB/TrEMBL
Match: A0A161YIC6_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_016224 PE=4 SV=1) HSP 1 Score: 92.0 bits (227), Expect = 5.200e-16 Identity = 42/112 (37.50%), Postives = 63/112 (56.25%), Query Frame = 1
BLAST of Spo15568.1 vs. UniProtKB/TrEMBL
Match: A0A067E0U5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033731mg PE=4 SV=1) HSP 1 Score: 92.0 bits (227), Expect = 5.200e-16 Identity = 48/112 (42.86%), Postives = 68/112 (60.71%), Query Frame = 1
BLAST of Spo15568.1 vs. ExPASy Swiss-Prot
Match: THNL2_ARATH (Thionin-like protein 2 OS=Arabidopsis thaliana GN=At1g12663 PE=3 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 5.200e-9 Identity = 32/113 (28.32%), Postives = 57/113 (50.44%), Query Frame = 1
BLAST of Spo15568.1 vs. TAIR (Arabidopsis)
Match: AT1G12663.1 (Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.) HSP 1 Score: 62.0 bits (149), Expect = 2.900e-10 Identity = 32/113 (28.32%), Postives = 57/113 (50.44%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo15568.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo15568.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo15568.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 1
BLAST of Spo15568.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
RNA-Seq Expression
|