Spo15589 (gene) | SpinachBase

Overview


Name	Spo15589
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	SpoScf_31400 : 360 .. 770 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTGTAACAAGTTCTTCATCCTAGCTCTCTTGATCGCTTTGTCGATGGCAAGCATTGAAGTAAGCGAAGGAGGTCGCCGCCTTCTCCAAACAAAACCGCCACCACAGATGACACTTCCGCCGTTACCCTCCATGCCAAACATGCCTAGTATTCCAAATATCCCATCTATCAACCCTCAACAACCATCATCCTTGCCACCACTACCAAATATGCCTACAACAATGCCCTCTATTCCGAAGGTGGCCCTACCTCCAATGCCAAACATGGCCTCTATACCCCTACCTACATCAATGCCTTCCATTCCGAAGATGTCTCTCCCTCCAATGCCAAACATGCCCTCTATTCCTCTACCTACATCCATGCCTTCCATTCCTTTCCTCTCATCTCCTCCTCCTTCCAATAATTGA

mRNA sequence

ATGGCTTGTAACAAGTTCTTCATCCTAGCTCTCTTGATCGCTTTGTCGATGGCAAGCATTGAAGTAAGCGAAGGAGGTCGCCGCCTTCTCCAAACAAAACCGCCACCACAGATGACACTTCCGCCGTTACCCTCCATGCCAAACATGCCTAGTATTCCAAATATCCCATCTATCAACCCTCAACAACCATCATCCTTGCCACCACTACCAAATATGCCTACAACAATGCCCTCTATTCCGAAGGTGGCCCTACCTCCAATGCCAAACATGGCCTCTATACCCCTACCTACATCAATGCCTTCCATTCCGAAGATGTCTCTCCCTCCAATGCCAAACATGCCCTCTATTCCTCTACCTACATCCATGCCTTCCATTCCTTTCCTCTCATCTCCTCCTCCTTCCAATAATTGA

Coding sequence (CDS)

ATGGCTTGTAACAAGTTCTTCATCCTAGCTCTCTTGATCGCTTTGTCGATGGCAAGCATTGAAGTAAGCGAAGGAGGTCGCCGCCTTCTCCAAACAAAACCGCCACCACAGATGACACTTCCGCCGTTACCCTCCATGCCAAACATGCCTAGTATTCCAAATATCCCATCTATCAACCCTCAACAACCATCATCCTTGCCACCACTACCAAATATGCCTACAACAATGCCCTCTATTCCGAAGGTGGCCCTACCTCCAATGCCAAACATGGCCTCTATACCCCTACCTACATCAATGCCTTCCATTCCGAAGATGTCTCTCCCTCCAATGCCAAACATGCCCTCTATTCCTCTACCTACATCCATGCCTTCCATTCCTTTCCTCTCATCTCCTCCTCCTTCCAATAATTGA

Protein sequence

MACNKFFILALLIALSMASIEVSEGGRRLLQTKPPPQMTLPPLPSMPNMPSIPNIPSINPQQPSSLPPLPNMPTTMPSIPKVALPPMPNMASIPLPTSMPSIPKMSLPPMPNMPSIPLPTSMPSIPFLSSPPPSNN

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo15589.1	Spo15589.1	mRNA

Homology

[Close]

BLAST of Spo15589.1 vs. NCBI nr
Match: gi|902231848|gb|KNA22420.1| (hypothetical protein SOVF_034330 [Spinacia oleracea])

HSP 1 Score: 220.3 bits (560), Expect = 2.000e-54
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1


		  
Query: 17  MASIEVSEGGRRLLQTKPPPQMTLPPLPSMPNMPSIPNIPSINPQQPSSLPPLPNMPTTM 76
           MASIEVSEGGRRLLQTKPPPQMTLPPLPSMPNMPSIPNIPSINPQQPSSLPPLPNMPTTM
Sbjct: 1   MASIEVSEGGRRLLQTKPPPQMTLPPLPSMPNMPSIPNIPSINPQQPSSLPPLPNMPTTM 60

Query: 77  PSIPKVALPPMPNMASIPLPTSMPSIPKMSLPPMPNMPSIPLPTSMPSIPFLSSPPPSNN 136
           PSIPKVALPPMPNMASIPLPTSMPSIPKMSLPPMPNMPSIPLPTSMPSIPFLSSPPPSNN
Sbjct: 61  PSIPKVALPPMPNMASIPLPTSMPSIPKMSLPPMPNMPSIPLPTSMPSIPFLSSPPPSNN 120

[Close]

BLAST of Spo15589.1 vs. NCBI nr
Match: gi|870848604|gb|KMT00893.1| (hypothetical protein BVRB_9g221650 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 138.7 bits (348), Expect = 7.800e-30
Identity = 85/123 (69.11%), Postives = 95/123 (77.24%), Query Frame = 1


		  
Query: 1   MACNKFFILALLIALSMASIEVSEGGRRLLQTKPPPQMTLPPLPSMPNMPSIPN------ 60
           MA +KFF+LAL IALS  +I+ SEG RRLLQT PPP  TLPP+P++PNMPSIPN      
Sbjct: 1   MAASKFFLLALFIALSTMNIDASEGARRLLQTTPPPT-TLPPMPTLPNMPSIPNMPQPTL 60

Query: 61  --IPSINPQQ------PSSLPPLPNMPTTMPSIPKVALPPMPNMASIPLPTSMPSIPKMS 110
             IP INPQQ      P++LPPLPNMPTTMPSIPKVALPPMPNM SIPLPTS+PSIP  S
Sbjct: 61  PNIPKINPQQPSALPKPAALPPLPNMPTTMPSIPKVALPPMPNMPSIPLPTSIPSIPFFS 120

[Close]

BLAST of Spo15589.1 vs. NCBI nr
Match: gi|731360401|ref|XP_010691796.1| (PREDICTED: protein app1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 132.9 bits (333), Expect = 4.300e-28
Identity = 87/140 (62.14%), Postives = 98/140 (70.00%), Query Frame = 1


		  
Query: 4   NKFFILALLIALSMASIEVSEGGRRLLQTKPPPQMTLPPLPSMPNMPSIPN--------I 63
           +K F+L L IALSM SI+VSEG R LLQT PP    LPPLP++PNMPSIPN        I
Sbjct: 3   SKCFLLVLFIALSMVSIDVSEGARHLLQTTPPQTAALPPLPTLPNMPSIPNMPQPTMPNI 62

Query: 64  PSINPQQPSSLPPLPNMPTTMPSIPKVALPPMPNMASIPLPTSMPSIPKMSLPPMPNMPS 123
           P+I PQQPS+LP               ALPP+PNM     PT+MPSIPKM+LPPMPNMPS
Sbjct: 63  PTITPQQPSALP------------KPAALPPLPNM-----PTTMPSIPKMALPPMPNMPS 122

Query: 124 IPLPTSMPSIPFLSSPPPSN 136
           IP PTS+PSIPFL SPPPSN
Sbjct: 123 IPFPTSIPSIPFL-SPPPSN 124

[Close]

BLAST of Spo15589.1 vs. NCBI nr
Match: gi|566179406|ref|XP_006380354.1| (hypothetical protein POPTR_0007s03440g [Populus trichocarpa])

HSP 1 Score: 99.8 bits (247), Expect = 4.000e-18
Identity = 63/131 (48.09%), Postives = 88/131 (67.18%), Query Frame = 1


		  
Query: 6   FFILALLIALSMASIEVSEGGRRLLQTKPPPQMTLPPLPSMPNMPSIPNIPSINPQQPSS 65
           FFILAL IAL+ +S+ VS   R LLQ  P P++ +PPLPS+PN+P               
Sbjct: 7   FFILALFIALTFSSMNVSIAARHLLQLPPLPKIPMPPLPSIPNLPQ-------------- 66

Query: 66  LPPLPNMPTTMPSIPKVALPPMPNMASIPLPTSMPSIPKMSLPPMPNMPSIPLPTSMPSI 125
            P LP +PTT PS+PK  LPP+P++ +IP   + P++PK++LPP+P+MPSIP   ++PSI
Sbjct: 67  -PTLPTLPTTQPSLPKPTLPPLPSIPTIP---TFPTVPKVTLPPLPSMPSIPTIPTIPSI 119

Query: 126 PFLSSPPPSNN 137
           PFLS PP + +
Sbjct: 127 PFLSPPPATTS 119

[Close]

BLAST of Spo15589.1 vs. NCBI nr
Match: gi|566212001|ref|XP_006373030.1| (hypothetical protein POPTR_0017s07410g [Populus trichocarpa])

HSP 1 Score: 97.8 bits (242), Expect = 1.500e-17
Identity = 72/143 (50.35%), Postives = 97/143 (67.83%), Query Frame = 1


		  
Query: 1   MACNKFFILALLIALSMASIEVSEGGRRLLQTKPPPQMTLPPLPSMPNMP--SIPNIPSI 60
           MA  K  IL+L IALS       E  R LLQ    P+  LPPLPS+P++P  ++P +P+ 
Sbjct: 1   MAAFKCLILSLFIALSFLG---GEAARNLLQLPNLPKPALPPLPSIPSLPQPTLPALPTT 60

Query: 61  NPQQPS-SLPPLPNMPT--TMPSIPKVALPPMPNMASIPLPTSMPSIPKMSLPPMPNMPS 120
            P  P+ +LPPLP++PT  TMP++PKV+LPP+P+M ++P       +PK SLPP+P+MPS
Sbjct: 61  QPSLPNPNLPPLPSLPTMPTMPAVPKVSLPPLPSMPTLPTV-----VPKASLPPLPSMPS 120

Query: 121 IP---LPTSMPSIPFLSSPPPSN 136
           IP   LPT++PSIPFLS PP  N
Sbjct: 121 IPNIPLPTTIPSIPFLSPPPAGN 135

[Close]

BLAST of Spo15589.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RS96_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_034330 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.400e-54
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1


		  
Query: 17  MASIEVSEGGRRLLQTKPPPQMTLPPLPSMPNMPSIPNIPSINPQQPSSLPPLPNMPTTM 76
           MASIEVSEGGRRLLQTKPPPQMTLPPLPSMPNMPSIPNIPSINPQQPSSLPPLPNMPTTM
Sbjct: 1   MASIEVSEGGRRLLQTKPPPQMTLPPLPSMPNMPSIPNIPSINPQQPSSLPPLPNMPTTM 60

Query: 77  PSIPKVALPPMPNMASIPLPTSMPSIPKMSLPPMPNMPSIPLPTSMPSIPFLSSPPPSNN 136
           PSIPKVALPPMPNMASIPLPTSMPSIPKMSLPPMPNMPSIPLPTSMPSIPFLSSPPPSNN
Sbjct: 61  PSIPKVALPPMPNMASIPLPTSMPSIPKMSLPPMPNMPSIPLPTSMPSIPFLSSPPPSNN 120

[Close]

BLAST of Spo15589.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BLA2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g221650 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 5.400e-30
Identity = 85/123 (69.11%), Postives = 95/123 (77.24%), Query Frame = 1


		  
Query: 1   MACNKFFILALLIALSMASIEVSEGGRRLLQTKPPPQMTLPPLPSMPNMPSIPN------ 60
           MA +KFF+LAL IALS  +I+ SEG RRLLQT PPP  TLPP+P++PNMPSIPN      
Sbjct: 1   MAASKFFLLALFIALSTMNIDASEGARRLLQTTPPPT-TLPPMPTLPNMPSIPNMPQPTL 60

Query: 61  --IPSINPQQ------PSSLPPLPNMPTTMPSIPKVALPPMPNMASIPLPTSMPSIPKMS 110
             IP INPQQ      P++LPPLPNMPTTMPSIPKVALPPMPNM SIPLPTS+PSIP  S
Sbjct: 61  PNIPKINPQQPSALPKPAALPPLPNMPTTMPSIPKVALPPMPNMPSIPLPTSIPSIPFFS 120

[Close]

BLAST of Spo15589.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BIS7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g221640 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 3.000e-28
Identity = 87/140 (62.14%), Postives = 98/140 (70.00%), Query Frame = 1


		  
Query: 4   NKFFILALLIALSMASIEVSEGGRRLLQTKPPPQMTLPPLPSMPNMPSIPN--------I 63
           +K F+L L IALSM SI+VSEG R LLQT PP    LPPLP++PNMPSIPN        I
Sbjct: 3   SKCFLLVLFIALSMVSIDVSEGARHLLQTTPPQTAALPPLPTLPNMPSIPNMPQPTMPNI 62

Query: 64  PSINPQQPSSLPPLPNMPTTMPSIPKVALPPMPNMASIPLPTSMPSIPKMSLPPMPNMPS 123
           P+I PQQPS+LP               ALPP+PNM     PT+MPSIPKM+LPPMPNMPS
Sbjct: 63  PTITPQQPSALP------------KPAALPPLPNM-----PTTMPSIPKMALPPMPNMPS 122

Query: 124 IPLPTSMPSIPFLSSPPPSN 136
           IP PTS+PSIPFL SPPPSN
Sbjct: 123 IPFPTSIPSIPFL-SPPPSN 124

[Close]

BLAST of Spo15589.1 vs. UniProtKB/TrEMBL
Match: U5G7A3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s03440g PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.800e-18
Identity = 63/131 (48.09%), Postives = 88/131 (67.18%), Query Frame = 1


		  
Query: 6   FFILALLIALSMASIEVSEGGRRLLQTKPPPQMTLPPLPSMPNMPSIPNIPSINPQQPSS 65
           FFILAL IAL+ +S+ VS   R LLQ  P P++ +PPLPS+PN+P               
Sbjct: 7   FFILALFIALTFSSMNVSIAARHLLQLPPLPKIPMPPLPSIPNLPQ-------------- 66

Query: 66  LPPLPNMPTTMPSIPKVALPPMPNMASIPLPTSMPSIPKMSLPPMPNMPSIPLPTSMPSI 125
            P LP +PTT PS+PK  LPP+P++ +IP   + P++PK++LPP+P+MPSIP   ++PSI
Sbjct: 67  -PTLPTLPTTQPSLPKPTLPPLPSIPTIP---TFPTVPKVTLPPLPSMPSIPTIPTIPSI 119

Query: 126 PFLSSPPPSNN 137
           PFLS PP + +
Sbjct: 127 PFLSPPPATTS 119

[Close]

BLAST of Spo15589.1 vs. UniProtKB/TrEMBL
Match: U5FN76_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s07410g PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.100e-17
Identity = 72/143 (50.35%), Postives = 97/143 (67.83%), Query Frame = 1


		  
Query: 1   MACNKFFILALLIALSMASIEVSEGGRRLLQTKPPPQMTLPPLPSMPNMP--SIPNIPSI 60
           MA  K  IL+L IALS       E  R LLQ    P+  LPPLPS+P++P  ++P +P+ 
Sbjct: 1   MAAFKCLILSLFIALSFLG---GEAARNLLQLPNLPKPALPPLPSIPSLPQPTLPALPTT 60

Query: 61  NPQQPS-SLPPLPNMPT--TMPSIPKVALPPMPNMASIPLPTSMPSIPKMSLPPMPNMPS 120
            P  P+ +LPPLP++PT  TMP++PKV+LPP+P+M ++P       +PK SLPP+P+MPS
Sbjct: 61  QPSLPNPNLPPLPSLPTMPTMPAVPKVSLPPLPSMPTLPTV-----VPKASLPPLPSMPS 120

Query: 121 IP---LPTSMPSIPFLSSPPPSN 136
           IP   LPT++PSIPFLS PP  N
Sbjct: 121 IPNIPLPTTIPSIPFLSPPPAGN 135

The following BLAST results are available for this feature:

BLAST of Spo15589.1 vs. NCBI nr
BLAST of Spo15589.1 vs. UniProtKB/TrEMBL
BLAST of Spo15589.1 vs. ExPASy Swiss-Prot
BLAST of Spo15589.1 vs. TAIR (Arabidopsis)

BLAST of Spo15589.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902231848\|gb\|KNA22420.1\|	2.0e-54	100.	hypothetical protein SOVF_0343...	[more]
gi\|870848604\|gb\|KMT00893.1\|	7.8e-30	69.1	hypothetical protein BVRB_9g22...	[more]
gi\|731360401\|ref\|XP_010691796.1\|	4.3e-28	62.1	PREDICTED: protein app1 [Beta ...	[more]
gi\|566179406\|ref\|XP_006380354.1\|	4.0e-18	48.0	hypothetical protein POPTR_000...	[more]
gi\|566212001\|ref\|XP_006373030.1\|	1.5e-17	50.3	hypothetical protein POPTR_001...	[more]

BLAST of Spo15589.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RS96_SPIOL	1.4e-54	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8BLA2_BETVU	5.4e-30	69.1	Uncharacterized protein OS=Bet...	[more]
A0A0J8BIS7_BETVU	3.0e-28	62.1	Uncharacterized protein OS=Bet...	[more]
U5G7A3_POPTR	2.8e-18	48.0	Uncharacterized protein OS=Pop...	[more]
U5FN76_POPTR	1.1e-17	50.3	Uncharacterized protein OS=Pop...	[more]

BLAST of Spo15589.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo15589.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33088	FAMILY NOT NAMED	coord: 1..135 score: 6.3

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046486	glycerolipid metabolic process
biological_process	GO:0006869	lipid transport
biological_process	GO:0009561	megagametogenesis
biological_process	GO:0000041	transition metal ion transport
biological_process	GO:0016042	lipid catabolic process
biological_process	GO:0042967	obsolete acyl-carrier-protein biosynthetic process
biological_process	GO:0008152	metabolic process
biological_process	GO:0015716	organic phosphonate transport
biological_process	GO:0015748	organophosphate ester transport
cellular_component	GO:0031225	anchored component of membrane
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0016020	membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0016788	hydrolase activity, acting on ester bonds
molecular_function	GO:0015416	ATPase-coupled organic phosphonate transmembrane transporter activity
molecular_function	GO:0008289	lipid binding
molecular_function	GO:0004366	glycerol-3-phosphate O-acyltransferase activity
molecular_function	GO:0003677	DNA binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo24296	1.00	Barchart \| Table
Spo00496	0.85	Barchart \| Table
Spo21916	0.84	Barchart \| Table
Spo02244	0.81	Barchart \| Table
Spo21915	0.79	Barchart \| Table
Spo08107	0.76	Barchart \| Table
Spo20985	0.75	Barchart \| Table
Spo00119	0.74	Barchart \| Table
Spo02094	0.73	Barchart \| Table
Spo19280	0.72	Barchart \| Table
Spo17763	0.72	Barchart \| Table
Spo01756	0.71	Barchart \| Table
Spo20591	0.70	Barchart \| Table
Spo15544	0.69	Barchart \| Table
Spo27131	0.67	Barchart \| Table
Spo21236	0.66	Barchart \| Table
Spo19880	0.66	Barchart \| Table
Spo18520	0.65	Barchart \| Table
Spo16497	0.65	Barchart \| Table