Spo15608 (gene) | SpinachBase

Overview


Name	Spo15608
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	embryo defective 1303
Location	chr4 : 7132870 .. 7139065 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAAAAATCATTATACTATTAGATGTGTCATTTTCGTAAATAAGCGTCGATGTCATAATAATCTTCTCTGCATCTCCTTCTTCTTCCTCCTCTCGCATCCACCTCTCCTCTTTTCTGCTGCTGCTATTCTCGGTAATTATCTACAATCGATTTTTCTGTTGATTTTATTTGTATTTTTTATTGATTCAAACACGTAATTCTGTAAATTGTTAATTTATATTCTGTTGGGGTTTGTCTTGGTGTTGTGAATTTCGTATTATACTTCTTCTTTTTTTATATGAATCGATATTTCTGATATGACGCTTTTCAAATGGTTAAAATATATTCTTCTGGGTTTGTTTTGGGGGTTTTTCATGAGAAATTCTACTTGAAATTCGTACAATCCTTTCAATTTTCTATGATATTTGGCTGTTGTTGATTGTTTTCTGGTGCTTTATGTTTGTGAGATTGTTTAGGTTAAAGTTGATGATTTATAAATGGCGATATCTTCACTGAGTGCTACTTCTGGACTTTCTGCAGTGTTATTATTATCCCCAGGTTTGTGAACTTTCTCCTGTATAGTTGTATGCCCTAGTAAATTAATCAAGGTATTAATTGTTTGTCAATGTGTCTTCATCTGTTTAGTTTGTTGGATAAGAACATAAGATTGGGTTTTGGGGAAAGTTTGGTGAAACTGGTTAGCTAAATAAAGTAGATTCAGATAGTATTATCTGCCTTTGAATTTTGCTCATGATACCTTTGATTTGTGAAATTTCAATTGGGTTTGGTTATTAGTGATGTGCAAATGAACCCCATACCTTTTAATTAAAGCAAATTAACCCTATCTCTTTTATGGAACGTGCAATTAACACCTAATTAATATTTTCGGCATAATCTCAACAAGCAAAGAGTAAAAAGCACCGGAAAACTACTAAAATCAATAACGAAACACTCAAACACCACAAACCTCAAATGTTTATCTCTCTTCCTTGACCCTTCTAAGGCTCTAATTGTAGTCAGCCTTTAATTTATTAATCAATTCGTATTTCCGTTGGGAAAAAAGGGATCAAACCGGAGACATTGGCTTTCCATATTTTTCACATCTTCAACCATTATTTGCTTAAGACTTTGGTGTGATGTGCAAATGAACCCCAAGACTTGGGCTCGTACGAACACCAAAGTACGATGTGCAAATGAACCCCATACCTTTTAATTAAAGTCTTGTAGATGGTTCATATGCAAATAACGGTTCATTTGCATATCTTCAACCATCATATCACATTGGGTTCACTTTTTGCTTAATGGTTCAAAGTGCGTTGTAGATGGTTTAACGGTGCTGAAAAAGCTGTATGGTGCTCTATAAATTTCAACATATGTTCATGGAATAGTCCTAATGAGGTTTTTGATGAAAACAGAAGTTAGCTTCATTATTATTTGTTTGACGTTCTACTGCTTGCTTCTCGCCAAGCTGGCTTGGTTGCTTTTGCCTGCTCTGTGGTAGTAGCTAATGGCAATACGTTTTTGAACAGTGAGATTTGACTTGCCAAGGAGGGGTCCATTAAAGCATCATAACCACGGCGTAGCAGGGCTTGGTAAGGCATCATTTGGTTTGCATCGTGAACAACAGTTAGTGAGGCTTGGCAAGCTGTCATTATGTTTGAGTCACATTCAAAGGTCAACTCCCACAACCAGAGTGCGTTCTGCTTCCGTGGTCTGTTCAGCTGCTTTGGTAATATTTTCCTCCATGAATTATGATTCACTTTTTACTCTATCCAACTTTCTTAGTTCTTTTTGCGATTTCTGTGATATGTTTTAGTTACAAGGATTTTAGATGTAAGCCATGAGGGAAACGTTAGAAGTAATTTAGTAAAGTTGTATGTGAAATATCAGTAATACATAAATAAAATTACTAAAGTCAGTTTTGGCCCTTTTGGGATGGGTGCGATTATTGGCGCACACCAAATATATAGCACAAGTATGTTTTAGCCAGTCTATCAGTTTACTCCCGAGAGTTGTATTTGTAAGACAGATGGGATTTATCATGGTAGGGATCTCTCTCTTTTTAGGCATTTTTTCTGTTGTGTTTTAATTTTTATGCTCCGCTGTAAAAGTAGTTGTTTTAATAATAATATTTAGATCACTTAGATGTTTTATCTACCCCTGAAGTTGCTAGGAATTTGTTTTTGGGTATGCAATCCCGTTTATAATCTAATGTGTATGTTTTGCTGTATTACTATTAGAAGCCACAATATGTATTATTACATGCAAAAAAATCTGTAAACGTAAGAGTAGTTTATGGAACTGTGTTGACGCAATTTCAGTATCCCAACTTGGTTCACTATTTTTGTTCTTTTATTGATTAAGAACTAGATATGATATCTAATGTAAAGTACTAATACTTCAATGATTTCAAGTAATTGAATAAAGGGCGTCTTTTACTACCTCTGTCCCAGACTCCCATTAGTTGGCAACTTGGCATACACTGGATTCTGGAATGAGTAAATCAAGGGAACATTTGTTTGTTTCCCACCATTTCTATTGCTTTTTTTTGGGTGTGTGTGTGTGGCAATTAAAGATATGTATTGCCAAGAATAAAAAAGAAAAACAAGGCAACAGCCCAAACAAACTGCACCACAGTGCCCCAACAGCCAACAAAACCAAATGAAACAAAAACAGCATCAGTATCTCATAAGCCTCCACCTTCTAGGAAGGGTTAGACTTATAGACCCATCACATGCTTAGTTTCTAATTAGCAAAATAAACATCTTATCAGGTACTCTACAAGCCACCTTAAAAACAACTACTCTGCAAACCTGTTAGGGAGGCTTACATGTGCCATTATAAACAATTTCATTCCTCTGGGTCCATATTGCATAACAGCTTCAGCAAAAAGCAATAGGAAAACTTTATGCTTATACCCTCCTTTCTTCGCTGATTTAATAGCCCAGGCCAACTCTGCATCAAACCCCTCTGGTTGTCTGTTGAACTGAATCAATCGTAGCAATTCAGACCATACATGCTTAGAGTATGAACATAAAAAGAACAAGTGTTCTACTGTTTCAGCACAATTCCCACACAATCAACATGAATCATTATCAATCACATTCCACCGTAAAAATCTGACTGCAGTTGTAATCTATCCCAAATAGTCAACCAAAGAATGAAAATGCTCTTTGGTGAAGCAAGGTTGTTACACACAAACCTCCTCCATGCCACTTTAGGGAAGTGTCCCTTTAAGTATTTATACATCTTTTTAATGGAGTGTTTCTCACCATTCTGAACATTATCCCAGCCATTAGCATCCTCCACATACCGTACACTTTCAAATATTTCCCTCAGCATCCATGACATAGGTTTCACATTAACCCATGCCCCAACCGCTCGGTTCTTCAAGTAATAGCTGTTAACCCACCTGACCCAGAGTTTGTCTTTTTTGTTGTTTATAGCCCATAACAGTTTCGTGACAGCCGCTCTGTTCCAAGCTATCATATCCATAACATTCAACCCTCCTGCCGATTTTGGCATACATACCGAGCTCCAAGCCACCAGGGCTTTCCTTGATGAATTTGTTACACCCGTCCAAAGATAAAGCCTGCATTTGTTTCCACTTCTTTTATCACTTTTTTGGGAAGAACAAACAGCTGACACCAGAATGTTTGTAAGCTGAATAAAATGGTTTTAACAAGCTGCAACCTGCCAGCATAAGTCAATTTTTTAGCATCAAGGGAACATTTGTTTGTTTCCCACCATTTCTATTGCTTTTAACAAGTATCCTTCTTTATTAACAACATGACAACTATCTAGGACATTCATAGTAGGATGGTGGTAGTATTTGGTGACCAAAAGTCTGTGAACAAAGTTTGGCCAGACCTTTGTTTAACCCCCAGTTGGGTCCTTAGCAAAATTCTTCGTGCACAATTTTTGTTATCAGGGGAGCACGTAAAGCATCTTATGTTGGCATAACAATATCTCAGTGATCCTTTTGCAAATTAGCTATAGAAAACTAAAACCAGTTCTCACGTCGAAGGGAACCTCTACATCCTTCACGCATGGGATTTCTTTCTGAAATGTGAAATTGGGTAAACTGCCTAAACTTTCAAGAGAAATCTTAAGAGACTACTAGCTGAATAGAAACTTGGGGTGAGGTTAAAGATGGTCGTGTGGCGGGCCGGCATGAGGCCCGACATGAAAAGCCTGGCCCGGCATGGACATGAAAAAAGCACAAAGTCGTGGGCCGGGTCTGGGCTGCAATTTTTGGGAAAAGCACGCTAAATGCAGTAAATTTAGGCTTAGACACGATGACCCGACAGCCCATGAACATGGGCCCGTTTAGTGTGTGGGGCCCGAAGCCCGGCCCACGGCCATCTTTAGTTGGGGTGGGGAAATGTGAAGCGTCCGTGGAAGAGCCTATTCTCCATAGCAGTATCTGATATTTTACATAATTACATCACACTCAAGTATGGGTTTTAGTTTCAGAGTTCACCTTGTTTCTCAAGATTTAGTTAAAACTTCAAAAAGGGTCTTGTGACAACGATTTACTTGTGTTATGCTATTATGTTATCTTTACACCCTTGTATTATCTTTATATGCACGAGGTTGCCCTAAATAAGATCTTCCCATAATTTCGTATTGCAGAATGCCAGATGCGGAGCTGAAGGACAGACTCAAACTGTAGAGAAGCCAACTTCTGTAATTTCAAATGCACCAGGTAAGTTTTTGTCATTTCTGCATTTCATGAATTGGCTGAGAGTAGAGACTGATTGGATTCGAGTTTGTATTTTTTACTTTCACTGCGTTTCAACTTGGGATAAAATTTGATTACAAGTAAAAACTGAGCCTGTTGTAAAATTTACATGGTCAACTTTACATAGGAAAAAACAAAAATTAGAAGGTGCACCCGGTTGTATGTAGCTCTACATGCAACCGGGTTAAAAGCATATTTTTACTGTTTAAAAGCATATTTTTACAGTTGGTGATAACTAAAAACATGATGGTTTGATTGAAACTTTGAATGTTGCTTTCACATGGGGTAACTCTACCTTTCTTGGGTGGGGGTTTGTCAGCTAAAATGTTTTCATTTTCTAGAGGTGCCATTGACGTCAAGTCGTCAATTCTAATTTGTTCGCAGGTAAAGAGAAATCACCACTACTTGATGATGGAGGAACCGGATTCCCCCCACGTGATGATGACGGTGGTGGTGGCGGCGGAGGTGGTGGAGGTGGTAATTATAGCGGTGGGTTCTTCTTTTTTGGGTTTCTAGCATTCCTTGGATTCTTGAAAGACAAAGAAAATGAAGGACCCTATCAAGATTCTAGACGAAGATAAACAGTTGAGCTCGACTGTCTTTCTATAGTTTTCATATCATATCGTCGCCTATTATGTTCTGGTTTAATCACATAACGTGTTTTTAATCTTTGCTTCATGGGGTGATGCCCATATGATGAACCGATTTTGCAGCAAAAATTAGTTACGAAGTATAAAGTTTTTTCGTTAATGCATCGTAGTATCAATGTACCATACTTCGTAGTTCACAATCGTTCATCTTTTCATTACTCGTGTATCATGTTTAATACCAATACGAATATCAGCCACACAACAATAGCCTTATATAAAAGTTTGTATATTTGTTATTACTTGTAAGAGTTTCCAGTAGCAACAAGTGAAAATGTGATCAGAGTAAAAATCTATCATATATGTGTCATTTTCGTAACTATCATGCTTTGACAATTGTAGAGGCTTTTTGCTCGTAAATATATTGAAACATAGAGATTACAACAGGGAGTGTGCACAATTCAGATGGATCGGAAATGGACCGGAGTAAAAGATGGCTGTGGGCTGGGCCATCCCGAGGCCCGATCTGACCCGGCTTGAAAAAAGCCCAACATGGCACGGGAACGAGCACAAAGTCGTGGGCCAGGTTTGGGCTACATTTTTTGGAAAAAACACAGTAAGGTACGGCACGACTCGACCCATCACGACAAAACATGCTAAATTTAGTAAAAAATAGGCTTAGACACGACGACCCGTGAGCCTTAGGCCGGGTATGATCCCTGTTTTGAACTTTTTGGCCCGGCCCGACAGAGAGTGTGCCTAGGCGGATCGGCCCACGGCCATCTTTAGACAGGACTAAGGAATTACGGTCACAACATCCATTTATGTATTTTACTGATGGTTTATGTCACAAGCTCACAACTGCAATAAAATTAATCAAGTCCCA

mRNA sequence

TAAAAAATCATTATACTATTAGATGTGTCATTTTCGTAAATAAGCGTCGATGTCATAATAATCTTCTCTGCATCTCCTTCTTCTTCCTCCTCTCGCATCCACCTCTCCTCTTTTCTGCTGCTGCTATTCTCGGTTAAAGTTGATGATTTATAAATGGCGATATCTTCACTGAGTGCTACTTCTGGACTTTCTGCAGTGTTATTATTATCCCCAGTGAGATTTGACTTGCCAAGGAGGGGTCCATTAAAGCATCATAACCACGGCGTAGCAGGGCTTGGTAAGGCATCATTTGGTTTGCATCGTGAACAACAGTTAGTGAGGCTTGGCAAGCTGTCATTATGTTTGAGTCACATTCAAAGGTCAACTCCCACAACCAGAGTGCGTTCTGCTTCCGTGGTCTGTTCAGCTGCTTTGAATGCCAGATGCGGAGCTGAAGGACAGACTCAAACTGTAGAGAAGCCAACTTCTGTAATTTCAAATGCACCAGGTAAAGAGAAATCACCACTACTTGATGATGGAGGAACCGGATTCCCCCCACGTGATGATGACGGTGGTGGTGGCGGCGGAGGTGGTGGAGGTGGTAATTATAGCGGTGGGTTCTTCTTTTTTGGGTTTCTAGCATTCCTTGGATTCTTGAAAGACAAAGAAAATGAAGGACCCTATCAAGATTCTAGACGAAGATAAACAGTTGAGCTCGACTGTCTTTCTATAGTTTTCATATCATATCGTCGCCTATTATGTTCTGGTTTAATCACATAACGTGTTTTTAATCTTTGCTTCATGGGGTGATGCCCATATGATGAACCGATTTTGCAGCAAAAATTAGTTACGAAGTATAAAGTTTTTTCGTTAATGCATCGTAGTATCAATGTACCATACTTCGTAGTTCACAATCGTTCATCTTTTCATTACTCGTGTATCATGTTTAATACCAATACGAATATCAGCCACACAACAATAGCCTTATATAAAAGTTTGTATATTTGTTATTACTTGTAAGAGTTTCCAGTAGCAACAAGTGAAAATGTGATCAGAGTAAAAATCTATCATATATGTGTCATTTTCGTAACTATCATGCTTTGACAATTGTAGAGGCTTTTTGCTCGTAAATATATTGAAACATAGAGATTACAACAGGGAGTGTGCACAATTCAGATGGATCGGAAATGGACCGGAGTAAAAGATGGCTGTGGGCTGGGCCATCCCGAGGCCCGATCTGACCCGGCTTGAAAAAAGCCCAACATGGCACGGGAACGAGCACAAAGTCGTGGGCCAGGTTTGGGCTACATTTTTTGGAAAAAACACAGTAAGGTACGGCACGACTCGACCCATCACGACAAAACATGCTAAATTTAGTAAAAAATAGGCTTAGACACGACGACCCGTGAGCCTTAGGCCGGGTATGATCCCTGTTTTGAACTTTTTGGCCCGGCCCGACAGAGAGTGTGCCTAGGCGGATCGGCCCACGGCCATCTTTAGACAGGACTAAGGAATTACGGTCACAACATCCATTTATGTATTTTACTGATGGTTTATGTCACAAGCTCACAACTGCAATAAAATTAATCAAGTCCCA

Coding sequence (CDS)

ATGGCGATATCTTCACTGAGTGCTACTTCTGGACTTTCTGCAGTGTTATTATTATCCCCAGTGAGATTTGACTTGCCAAGGAGGGGTCCATTAAAGCATCATAACCACGGCGTAGCAGGGCTTGGTAAGGCATCATTTGGTTTGCATCGTGAACAACAGTTAGTGAGGCTTGGCAAGCTGTCATTATGTTTGAGTCACATTCAAAGGTCAACTCCCACAACCAGAGTGCGTTCTGCTTCCGTGGTCTGTTCAGCTGCTTTGAATGCCAGATGCGGAGCTGAAGGACAGACTCAAACTGTAGAGAAGCCAACTTCTGTAATTTCAAATGCACCAGGTAAAGAGAAATCACCACTACTTGATGATGGAGGAACCGGATTCCCCCCACGTGATGATGACGGTGGTGGTGGCGGCGGAGGTGGTGGAGGTGGTAATTATAGCGGTGGGTTCTTCTTTTTTGGGTTTCTAGCATTCCTTGGATTCTTGAAAGACAAAGAAAATGAAGGACCCTATCAAGATTCTAGACGAAGATAA

Protein sequence

MAISSLSATSGLSAVLLLSPVRFDLPRRGPLKHHNHGVAGLGKASFGLHREQQLVRLGKLSLCLSHIQRSTPTTRVRSASVVCSAALNARCGAEGQTQTVEKPTSVISNAPGKEKSPLLDDGGTGFPPRDDDGGGGGGGGGGGNYSGGFFFFGFLAFLGFLKDKENEGPYQDSRRR

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo15608.1	Spo15608.1	mRNA

Homology

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BLAST of Spo15608.1 vs. NCBI nr
Match: gi|902234360|gb|KNA23418.1| (hypothetical protein SOVF_025020 [Spinacia oleracea])

HSP 1 Score: 338.2 bits (866), Expect = 8.700e-90
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 1

		  
Query: 1   MAISSLSATSGLSAVLLLSPVRFDLPRRGPLKHHNHGVAGLGKASFGLHREQQLVRLGKL 60
           MAISSLSATSGLSAVLLLSPVRFDLPRRGPLKHHNHGVAGLGKASFGLHREQQLVRLGKL
Sbjct: 1   MAISSLSATSGLSAVLLLSPVRFDLPRRGPLKHHNHGVAGLGKASFGLHREQQLVRLGKL 60

Query: 61  SLCLSHIQRSTPTTRVRSASVVCSAALNARCGAEGQTQTVEKPTSVISNAPGKEKSPLLD 120
           SLCLSHIQRSTPTTRVRSASVVCSAALNARCGAEGQTQTVEKPTSVISNAPGKEKSPLLD
Sbjct: 61  SLCLSHIQRSTPTTRVRSASVVCSAALNARCGAEGQTQTVEKPTSVISNAPGKEKSPLLD 120

Query: 121 DGGTGFPPRDDDGGGGGGGGGGGNYSGGFFFFGFLAFLGFLKDKENEGPYQDSRRR 177
           DGGTGFPPRDDDGGGGGGGGGGGNYSGGFFFFGFLAFLGFLKDKENEGPYQDSRRR
Sbjct: 121 DGGTGFPPRDDDGGGGGGGGGGGNYSGGFFFFGFLAFLGFLKDKENEGPYQDSRRR 176

[Close]

BLAST of Spo15608.1 vs. NCBI nr
Match: gi|902217594|gb|KNA17783.1| (hypothetical protein SOVF_076800 [Spinacia oleracea])

HSP 1 Score: 301.6 bits (771), Expect = 9.000e-79
Identity = 162/176 (92.05%), Postives = 166/176 (94.32%), Query Frame = 1

		  
Query: 1   MAISSLSATSGLSAVLLLSPVRFDLPRRGPLKHHNHGVAGLGKASFGLHREQQLVRLGKL 60
           MAISSLSATSGLS+VLL SPVRFDLPRRGPLKHHNH VAGLGK SFGL+REQQLVRLGK 
Sbjct: 1   MAISSLSATSGLSSVLL-SPVRFDLPRRGPLKHHNHAVAGLGKVSFGLNREQQLVRLGK- 60

Query: 61  SLCLSHIQRSTPTTRVRSASVVCSAALNARCGAEGQTQTVEKPTSVISNAPGKEKSPLLD 120
               SH QRSTPTTRVRSASVVCSAALNA+CGAEGQTQTVEKPTSVISNAPGKEKSPLLD
Sbjct: 61  ----SHSQRSTPTTRVRSASVVCSAALNAKCGAEGQTQTVEKPTSVISNAPGKEKSPLLD 120

Query: 121 DGGTGFPPRDDDGGGGGGGGGGGNYSGGFFFFGFLAFLGFLKDKENEGPYQDSRRR 177
           DGGTGFPPRDDDGGGGGGGGGGGNYSGGFFFFGFLAFLGFLKD+ENEGPYQDSR R
Sbjct: 121 DGGTGFPPRDDDGGGGGGGGGGGNYSGGFFFFGFLAFLGFLKDRENEGPYQDSRGR 170

[Close]

BLAST of Spo15608.1 vs. NCBI nr
Match: gi|731347523|ref|XP_010685030.1| (PREDICTED: uncharacterized protein LOC104899524 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 269.6 bits (688), Expect = 3.800e-69
Identity = 145/176 (82.39%), Postives = 160/176 (90.91%), Query Frame = 1

		  
Query: 1   MAISSLSATSGLSAVLLLSPVRFDLPRRGPLKHHNHGVAGLGKASFGLHREQQLVRLGKL 60
           MAISSLSATSG++A L   PV+F+LPRRGP+KH+NHGV GLG+ SF L+RE QLVRLGKL
Sbjct: 1   MAISSLSATSGVTAALF-PPVKFELPRRGPVKHYNHGVGGLGRVSFCLNRE-QLVRLGKL 60

Query: 61  SLCLSHIQRSTPTTRVRSASVVCSAALNARCGAEGQTQTVEKPTSVISNAPGKEKSPLLD 120
           SLC S  Q+ T  TRVRSAS+VCSAALNARCGAEGQTQTVEKP SVIS+APGKEKSPLLD
Sbjct: 61  SLCSSRNQKLTSITRVRSASLVCSAALNARCGAEGQTQTVEKPVSVISHAPGKEKSPLLD 120

Query: 121 DGGTGFPPRDDDGGGGGGGGGGGNYSGGFFFFGFLAFLGFLKDKENEGPYQDSRRR 177
           DGGTGFPPRDDDGGGGGGGGGGGN+SGGFFFFGFLAFLGFLKD+E+EG Y+DSRRR
Sbjct: 121 DGGTGFPPRDDDGGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDQESEGSYRDSRRR 174

[Close]

BLAST of Spo15608.1 vs. NCBI nr
Match: gi|870866977|gb|KMT17889.1| (hypothetical protein BVRB_2g034200 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 243.8 bits (621), Expect = 2.200e-61
Identity = 139/176 (78.98%), Postives = 150/176 (85.23%), Query Frame = 1

		  
Query: 1   MAISSLSATSGLSAVLLLSPVRFDLPRRGPLKHHNHGVAGLGKASFGLHREQQLVRLGKL 60
           MAISS S+TSG+S+ L+ SP RF+L +   LKH NHGVAGLG+  F L+ EQQL R  KL
Sbjct: 3   MAISSFSSTSGVSS-LVSSPARFELSK---LKHCNHGVAGLGRP-FCLNCEQQLARPVKL 62

Query: 61  SLCLSHIQRSTPTTRVRSASVVCSAALNARCGAEGQTQTVEKPTSVISNAPGKEKSPLLD 120
           SL +SH QR TP   VR ASVVCSAALNARCGAEGQTQTVEKP SVIS+APGKEKSP LD
Sbjct: 63  SLRVSHNQRLTPKAGVRPASVVCSAALNARCGAEGQTQTVEKPVSVISHAPGKEKSPQLD 122

Query: 121 DGGTGFPPRDDDGGGGGGGGGGGNYSGGFFFFGFLAFLGFLKDKENEGPYQDSRRR 177
           DGGTGFPPRDDDGGGGGGGGGGGN+ GGFFFFGFLAFLGFLKDKENEGPYQDSRRR
Sbjct: 123 DGGTGFPPRDDDGGGGGGGGGGGNWRGGFFFFGFLAFLGFLKDKENEGPYQDSRRR 173

[Close]

BLAST of Spo15608.1 vs. NCBI nr
Match: gi|731317745|ref|XP_010669349.1| (PREDICTED: uncharacterized protein LOC104886588 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 243.8 bits (621), Expect = 2.200e-61
Identity = 139/176 (78.98%), Postives = 150/176 (85.23%), Query Frame = 1

		  
Query: 1   MAISSLSATSGLSAVLLLSPVRFDLPRRGPLKHHNHGVAGLGKASFGLHREQQLVRLGKL 60
           MAISS S+TSG+S+ L+ SP RF+L +   LKH NHGVAGLG+  F L+ EQQL R  KL
Sbjct: 20  MAISSFSSTSGVSS-LVSSPARFELSK---LKHCNHGVAGLGRP-FCLNCEQQLARPVKL 79

Query: 61  SLCLSHIQRSTPTTRVRSASVVCSAALNARCGAEGQTQTVEKPTSVISNAPGKEKSPLLD 120
           SL +SH QR TP   VR ASVVCSAALNARCGAEGQTQTVEKP SVIS+APGKEKSP LD
Sbjct: 80  SLRVSHNQRLTPKAGVRPASVVCSAALNARCGAEGQTQTVEKPVSVISHAPGKEKSPQLD 139

Query: 121 DGGTGFPPRDDDGGGGGGGGGGGNYSGGFFFFGFLAFLGFLKDKENEGPYQDSRRR 177
           DGGTGFPPRDDDGGGGGGGGGGGN+ GGFFFFGFLAFLGFLKDKENEGPYQDSRRR
Sbjct: 140 DGGTGFPPRDDDGGGGGGGGGGGNWRGGFFFFGFLAFLGFLKDKENEGPYQDSRRR 190

[Close]

BLAST of Spo15608.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RVC9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_025020 PE=4 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 6.000e-90
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 1

		  
Query: 1   MAISSLSATSGLSAVLLLSPVRFDLPRRGPLKHHNHGVAGLGKASFGLHREQQLVRLGKL 60
           MAISSLSATSGLSAVLLLSPVRFDLPRRGPLKHHNHGVAGLGKASFGLHREQQLVRLGKL
Sbjct: 1   MAISSLSATSGLSAVLLLSPVRFDLPRRGPLKHHNHGVAGLGKASFGLHREQQLVRLGKL 60

Query: 61  SLCLSHIQRSTPTTRVRSASVVCSAALNARCGAEGQTQTVEKPTSVISNAPGKEKSPLLD 120
           SLCLSHIQRSTPTTRVRSASVVCSAALNARCGAEGQTQTVEKPTSVISNAPGKEKSPLLD
Sbjct: 61  SLCLSHIQRSTPTTRVRSASVVCSAALNARCGAEGQTQTVEKPTSVISNAPGKEKSPLLD 120

Query: 121 DGGTGFPPRDDDGGGGGGGGGGGNYSGGFFFFGFLAFLGFLKDKENEGPYQDSRRR 177
           DGGTGFPPRDDDGGGGGGGGGGGNYSGGFFFFGFLAFLGFLKDKENEGPYQDSRRR
Sbjct: 121 DGGTGFPPRDDDGGGGGGGGGGGNYSGGFFFFGFLAFLGFLKDKENEGPYQDSRRR 176

[Close]

BLAST of Spo15608.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RE96_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_076800 PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 6.300e-79
Identity = 162/176 (92.05%), Postives = 166/176 (94.32%), Query Frame = 1

		  
Query: 1   MAISSLSATSGLSAVLLLSPVRFDLPRRGPLKHHNHGVAGLGKASFGLHREQQLVRLGKL 60
           MAISSLSATSGLS+VLL SPVRFDLPRRGPLKHHNH VAGLGK SFGL+REQQLVRLGK 
Sbjct: 1   MAISSLSATSGLSSVLL-SPVRFDLPRRGPLKHHNHAVAGLGKVSFGLNREQQLVRLGK- 60

Query: 61  SLCLSHIQRSTPTTRVRSASVVCSAALNARCGAEGQTQTVEKPTSVISNAPGKEKSPLLD 120
               SH QRSTPTTRVRSASVVCSAALNA+CGAEGQTQTVEKPTSVISNAPGKEKSPLLD
Sbjct: 61  ----SHSQRSTPTTRVRSASVVCSAALNAKCGAEGQTQTVEKPTSVISNAPGKEKSPLLD 120

Query: 121 DGGTGFPPRDDDGGGGGGGGGGGNYSGGFFFFGFLAFLGFLKDKENEGPYQDSRRR 177
           DGGTGFPPRDDDGGGGGGGGGGGNYSGGFFFFGFLAFLGFLKD+ENEGPYQDSR R
Sbjct: 121 DGGTGFPPRDDDGGGGGGGGGGGNYSGGFFFFGFLAFLGFLKDRENEGPYQDSRGR 170

[Close]

BLAST of Spo15608.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C010_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g167760 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 2.600e-69
Identity = 145/176 (82.39%), Postives = 160/176 (90.91%), Query Frame = 1

		  
Query: 1   MAISSLSATSGLSAVLLLSPVRFDLPRRGPLKHHNHGVAGLGKASFGLHREQQLVRLGKL 60
           MAISSLSATSG++A L   PV+F+LPRRGP+KH+NHGV GLG+ SF L+RE QLVRLGKL
Sbjct: 1   MAISSLSATSGVTAALF-PPVKFELPRRGPVKHYNHGVGGLGRVSFCLNRE-QLVRLGKL 60

Query: 61  SLCLSHIQRSTPTTRVRSASVVCSAALNARCGAEGQTQTVEKPTSVISNAPGKEKSPLLD 120
           SLC S  Q+ T  TRVRSAS+VCSAALNARCGAEGQTQTVEKP SVIS+APGKEKSPLLD
Sbjct: 61  SLCSSRNQKLTSITRVRSASLVCSAALNARCGAEGQTQTVEKPVSVISHAPGKEKSPLLD 120

Query: 121 DGGTGFPPRDDDGGGGGGGGGGGNYSGGFFFFGFLAFLGFLKDKENEGPYQDSRRR 177
           DGGTGFPPRDDDGGGGGGGGGGGN+SGGFFFFGFLAFLGFLKD+E+EG Y+DSRRR
Sbjct: 121 DGGTGFPPRDDDGGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDQESEGSYRDSRRR 174

[Close]

BLAST of Spo15608.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D0M0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g034200 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.600e-61
Identity = 139/176 (78.98%), Postives = 150/176 (85.23%), Query Frame = 1

		  
Query: 1   MAISSLSATSGLSAVLLLSPVRFDLPRRGPLKHHNHGVAGLGKASFGLHREQQLVRLGKL 60
           MAISS S+TSG+S+ L+ SP RF+L +   LKH NHGVAGLG+  F L+ EQQL R  KL
Sbjct: 3   MAISSFSSTSGVSS-LVSSPARFELSK---LKHCNHGVAGLGRP-FCLNCEQQLARPVKL 62

Query: 61  SLCLSHIQRSTPTTRVRSASVVCSAALNARCGAEGQTQTVEKPTSVISNAPGKEKSPLLD 120
           SL +SH QR TP   VR ASVVCSAALNARCGAEGQTQTVEKP SVIS+APGKEKSP LD
Sbjct: 63  SLRVSHNQRLTPKAGVRPASVVCSAALNARCGAEGQTQTVEKPVSVISHAPGKEKSPQLD 122

Query: 121 DGGTGFPPRDDDGGGGGGGGGGGNYSGGFFFFGFLAFLGFLKDKENEGPYQDSRRR 177
           DGGTGFPPRDDDGGGGGGGGGGGN+ GGFFFFGFLAFLGFLKDKENEGPYQDSRRR
Sbjct: 123 DGGTGFPPRDDDGGGGGGGGGGGNWRGGFFFFGFLAFLGFLKDKENEGPYQDSRRR 173

[Close]

BLAST of Spo15608.1 vs. UniProtKB/TrEMBL
Match: A0A151S4R9_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_028448 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 3.600e-34
Identity = 87/152 (57.24%), Postives = 107/152 (70.39%), Query Frame = 1

		  
Query: 25  LPRRGPLKHHNHGVAGLGKASFGLHREQQLVRLGKLSLCLSHIQRSTPTTRVRSASVVCS 84
           LP+  P++   H +      +  L R  Q +     S C +     T    +R+A+++C+
Sbjct: 10  LPKLPPVRRGGHRIEENVITTCRLPRPLQTINNSISSSC-TQFPFGTRAHSIRTATIICA 69

Query: 85  AALNARCGAEGQTQTVEKPTSVISNAPGKEKSPLLDDGGTGFPPRDDDGGGGGGGGGGGN 144
           AALNARCGAE QTQTV +    I++ PGKEKSP LDDGGTGFPPRDDD GGGGGGGGGGN
Sbjct: 70  AALNARCGAE-QTQTVTRQAPTITHVPGKEKSPQLDDGGTGFPPRDDDDGGGGGGGGGGN 129

Query: 145 YSGGFFFFGFLAFLGFLKDKENEGPYQDSRRR 177
           +SGGFFFFGFLAFLGFLKDKE+E  Y+D+RRR
Sbjct: 130 WSGGFFFFGFLAFLGFLKDKESEDTYRDNRRR 159

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BLAST of Spo15608.1 vs. TAIR (Arabidopsis)
Match: AT1G56200.1 (embryo defective 1303)

HSP 1 Score: 120.2 bits (300), Expect = 1.300e-27
Identity = 72/115 (62.61%), Postives = 86/115 (74.78%), Query Frame = 1

		  
Query: 64  LSHIQRSTPTTRVRSASVVCSAALNARCGAEGQTQTVEKPTSVISNAP--GKEKSPLLDD 123
           LS +  S+     R + ++C +A+NA+C +EGQTQTV + +  I+ AP   KEKSP LDD
Sbjct: 42  LSAVGLSSGLGSRRKSLLICHSAINAKC-SEGQTQTVTRESPTITQAPVHSKEKSPSLDD 101

Query: 124 GGTGFPPRDDDGGGGGGGGGGGNYSGGFFFFGFLAFLGFLKDKENEGPYQDSRRR 177
           GG GFPPR DDG GGGGGGGGGN+SGGFFFFGFLAFLG LKDKE E  Y+ SRRR
Sbjct: 102 GGDGFPPR-DDGDGGGGGGGGGNWSGGFFFFGFLAFLGLLKDKEGEEDYRGSRRR 154

[Close]

BLAST of Spo15608.1 vs. TAIR (Arabidopsis)
Match: AT1G30475.1 (BEST Arabidopsis thaliana protein match is: embryo defective 1303 (TAIR:AT1G56200.1))

HSP 1 Score: 100.9 bits (250), Expect = 8.200e-22
Identity = 58/87 (66.67%), Postives = 70/87 (80.46%), Query Frame = 1

		  
Query: 83  CSAALNARCGAEGQTQTVEKPTSVISNAP--GKEKSPLLDDGGTGFPPRDDDGGGGGGGG 142
           C++ALN++C ++GQTQTV + +  I+ AP  GK KSP LDDGG GFPPR DDGGGGGGGG
Sbjct: 102 CNSALNSKC-SQGQTQTVTRQSPTITQAPTHGKVKSPKLDDGGNGFPPR-DDGGGGGGGG 161

Query: 143 GGGNYSGGFFFFGFLAFLGFLKDKENE 168
           GGG+ SGGFF FGFL F+G+LKD E E
Sbjct: 162 GGGSSSGGFFLFGFLLFMGYLKDLEGE 186

The following BLAST results are available for this feature:

BLAST of Spo15608.1 vs. NCBI nr
BLAST of Spo15608.1 vs. UniProtKB/TrEMBL
BLAST of Spo15608.1 vs. ExPASy Swiss-Prot
BLAST of Spo15608.1 vs. TAIR (Arabidopsis)

BLAST of Spo15608.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|902234360\|gb\|KNA23418.1\|	8.7e-90	100.	hypothetical protein SOVF_0250...	[more]
gi\|902217594\|gb\|KNA17783.1\|	9.0e-79	92.0	hypothetical protein SOVF_0768...	[more]
gi\|731347523\|ref\|XP_010685030.1\|	3.8e-69	82.3	PREDICTED: uncharacterized pro...	[more]
gi\|870866977\|gb\|KMT17889.1\|	2.2e-61	78.9	hypothetical protein BVRB_2g03...	[more]
gi\|731317745\|ref\|XP_010669349.1\|	2.2e-61	78.9	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo15608.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
A0A0K9RVC9_SPIOL	6.0e-90	100.	Uncharacterized protein OS=Spi...	[more]
A0A0K9RE96_SPIOL	6.3e-79	92.0	Uncharacterized protein OS=Spi...	[more]
A0A0J8C010_BETVU	2.6e-69	82.3	Uncharacterized protein OS=Bet...	[more]
A0A0J8D0M0_BETVU	1.6e-61	78.9	Uncharacterized protein OS=Bet...	[more]
A0A151S4R9_CAJCA	3.6e-34	57.2	Uncharacterized protein OS=Caj...	[more]

BLAST of Spo15608.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

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x 1


Match Name	E-value	Identity	Description

BLAST of Spo15608.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2

Position :

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x 1


Match Name	E-value	Identity	Description
AT1G56200.1	1.3e-27	62.6	embryo defective 1303	[more]
AT1G30475.1	8.2e-22	66.6	BEST Arabidopsis thaliana prot...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34938	FAMILY NOT NAMED	coord: 64..175 score: 9.2
None	No IPR available	PANTHER	PTHR34938:SF1	SUBFAMILY NOT NAMED	coord: 64..175 score: 9.2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0010228	vegetative to reproductive phase transition of meristem
biological_process	GO:0048573	photoperiodism, flowering
biological_process	GO:0006285	base-excision repair, AP site formation
biological_process	GO:0000737	DNA catabolic process, endonucleolytic
biological_process	GO:0006306	DNA methylation
biological_process	GO:0006289	nucleotide-excision repair
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0070932	histone H3 deacetylation
biological_process	GO:0061647	histone H3-K9 modification
biological_process	GO:0070933	histone H4 deacetylation
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0050794	regulation of cellular process
biological_process	GO:0009733	response to auxin
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006364	rRNA processing
biological_process	GO:0007034	vacuolar transport
biological_process	GO:0048481	plant ovule development
biological_process	GO:0044238	primary metabolic process
biological_process	GO:0009058	biosynthetic process
biological_process	GO:0016049	cell growth
biological_process	GO:0016043	cellular component organization
biological_process	GO:0016226	iron-sulfur cluster assembly
biological_process	GO:0060560	developmental growth involved in morphogenesis
biological_process	GO:1901576	organic substance biosynthetic process
biological_process	GO:0048869	cellular developmental process
biological_process	GO:0010817	regulation of hormone levels
biological_process	GO:0008152	metabolic process
biological_process	GO:0010015	root morphogenesis
biological_process	GO:0009793	embryo development ending in seed dormancy
cellular_component	GO:0000118	histone deacetylase complex
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0005634	nucleus
cellular_component	GO:0009840	chloroplastic endopeptidase Clp complex
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0030904	retromer complex
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046969	NAD-dependent histone deacetylase activity (H3-K9 specific)
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0046970	NAD-dependent histone deacetylase activity (H4-K16 specific)
molecular_function	GO:0003684	damaged DNA binding
molecular_function	GO:0097372	NAD-dependent histone deacetylase activity (H3-K18 specific)
molecular_function	GO:0032041	NAD-dependent histone deacetylase activity (H3-K14 specific)
molecular_function	GO:0008534	oxidized purine nucleobase lesion DNA N-glycosylase activity
molecular_function	GO:0004252	serine-type endopeptidase activity
molecular_function	GO:0004045	aminoacyl-tRNA hydrolase activity
molecular_function	GO:0004518	nuclease activity
molecular_function	GO:0046983	protein dimerization activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo10820	0.80	Barchart \| Table
Spo13121	0.77	Barchart \| Table
Spo04387	0.76	Barchart \| Table
Spo04959	0.76	Barchart \| Table
Spo27236	0.76	Barchart \| Table
Spo00538	0.75	Barchart \| Table
Spo09469	0.75	Barchart \| Table
Spo26313	0.74	Barchart \| Table
Spo25503	0.74	Barchart \| Table
Spo16893	0.74	Barchart \| Table
Spo00754	0.73	Barchart \| Table
Spo10817	0.73	Barchart \| Table
Spo12379	0.71	Barchart \| Table
Spo00064	0.70	Barchart \| Table
Spo08497	0.70	Barchart \| Table
Spo06980	0.69	Barchart \| Table
Spo15244	0.68	Barchart \| Table
Spo21535	0.67	Barchart \| Table
Spo23067	0.67	Barchart \| Table
Spo21716	0.67	Barchart \| Table
Spo10300	0.67	Barchart \| Table
Spo18220	0.67	Barchart \| Table
Spo20927	0.67	Barchart \| Table
Spo25075	0.66	Barchart \| Table
Spo06045	0.66	Barchart \| Table
Spo26907	0.66	Barchart \| Table
Spo05498	0.66	Barchart \| Table