Spo15718 (gene) | SpinachBase

Overview


Name	Spo15718
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	RING/U-box superfamily protein
Location	chr4 : 6568972 .. 6579502 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGATGTTTTTCATGATTGATTGTGTTAAGCTCTGCTATTGGTTGGAAGAAATCAAAGTTGTTATTCTATTGTTAGTACTGTATTTGCCACTGTGAATCTGTAATTCTTGCCTAAAACCTGAATCAACTTTTTTAACTCCACTTTATTAATATTTGGGTGTAAGTTTTGCGCATGGGTTGGTATAGCGGGCCCATGAGGAGAGATAGAGAGTAGACTTGATCAACTATAACCCGGCCCGAAAAAGTGTGGGTTTGGGCAGCCTAGAATATGTATTTTTAGACCAAAATCCATGCTCGACCCGAAAAGCTTGTTTCGGCCCGCAAAGCCCGCACCAAAATTATGGGTTTGGGGTTACTTTTTGTGTTAAAGTCCGACCCGACCTGAATTTTGATCACCTTTTATAGAGAGAGTAAGTGGGAAAAGTTACCATTTAAAGTATGAGTAAACTTAAAAGGGACACCCCAAAAAGGAATACGGGACAATCTTTTGGAGACGGAAGGAGTACTAATTGGAAACAAAAGAGTGGAGATTCGTACTACACTTATGATCTATCATACATAGAATCCCAGTCTTTACCAATAGACTAAGAACACATCATTGGTAAAAACCTTAATCAAATATATAATTAGGGAATATGTTGTGTGTACGAGTATAAATAATTAAGACAGTACCAATCATCGTATAAGTTTACAATATTTAGATTCCTTTACGCTTTAATTGATGGCCTAATTGTGGTTAAAAAATGTGATTTGTGTAAATAATTAGGGAGATAGTCCAAAAGTTGTTCAACTGCAAACAGTGTCCAACTTGATGTGTTTATTTTCATAATCTTAGTTAGTACTATGGAGTATCTCTTAATTACTTAATTAGCACTAGTTGGTAGTGAAACTTGATGATGTAAAAAAAAGTAATAAACGAAGGTGGATGAGAGTCAATAACGGGACGATGATGAACGGGTCAATTAGCTAGTACTTCGTAAAAAATAGAGATGGAAAAGAGAGTCAATCGACAGCCCATGTTAATTTTCACGTCATATATTTTGTTTTACTAAATTATTGCGCTAATATTCCGATCCATTTGTAGACCATGTCCGATAAATACCTTGTCAACTAATGATCATGTCCAGTAAAAGTCATTTTACATTGACCCTAACCCTTTACACAACGGACCACCCTGTCCAATACCCAGGTCTACTCTAAACGATGTACCGATAGTACTTAGAAAACACTGGCTCTAAAACATGAGCTAGTATTCCGACCTGTATCAACACTGTGTAATAAATGCCCTATCTACTAATGATCCTATCCAGTAAAAGTCATTTTATATCAACTCTAACTCATTACTAAACGGGTTAATTACCGTATCCAATAACCAGGTCTACTCCGAACGATGTACGGATAGCATTTAGAAAACCATGGCTATAAACATGAACTCAATAAAAGAAGATGAAGTTTGCATATATTGTAATGGTGGCCGTTGTAAATATAAACCAGAAGTCCTGACTTTTGTCACATGATGTACATGAAAACAGCTAACCAAACAAAAGTACTAACTACTTACAACCACAACTAGTACTTCAAACCTTTTTTTTTTGGTTTTTGTTTGTTAAAATTGTATGTTTGGCGGGAATTTATTACCTTTCTCACGTCAACCGACAACCAACTTTTTTACATACAATGGAAGTTGTTTGGGGAGTTGAAATTCAGGTAGATTTGGTGATCATTTGTATGAGTGTGACTCCTCTATGCTTATCTTCTCGAATTACGTAGTAATTGTCTGTTGGTTTAATGGTGATTGGGATTGAATAATGTCGGGCGAACTGCATGTTCGATCCCCTGCAACAACTATCAGGAGGGGCCTGAAACCTATCCACCTAAAACTCGCCCCGATTCCGAATTAGCCTTAAGGATGAACCGGGTGGTAACACCAAAAAAATAATCTGCTCATACAACAAAAAATCAGGTCTTTAGTAGTGGTAAAGATTGAGAGGCGGTGTATTAATAAGTCACATGTTCGAAGTCTGTTTCCTTTGTTTGTAACTTAATCCATCCTTATTTATTTGCTCCATAGGCAAATATGCTTTATTGAGGCTTTCACTATCATTTTGCATGAAGATGGTGCAAAATAGTCTTTTAATCTTTTATGATTGTGACTCCTCTATGTTTATGTTCTCGAACTAGTCGTAAACACCGAGTGCATACATATAATAGGGGAAATAATTTTGGCATACCAAAAATTTAATTTTGGCACATCATTGTGAGACACAGTTTTCCTTGCTTCACATAATAATGGGCCATTTTTTTACCATGCCAAAATTAATTTCTTTATAATAGATCACATGTTCAGATTCTCTCTTTTTGATTTATAATTTATAATGATCTTGTGACTCGTTAGCCCCCTCAAACTACATCCAAAGACTACTATCCAATGCCGTTACATCCAACGACCTTTATGTGTTTCCCATGATCTATTTTAGTTGGCCCACTTCATAGTCTTACTTTGAACTTTTTTTCTTCTTCTTTTTCCTCATTTAGTTGAGCTTATTTTATGAAATTTAAACATGGGTTAATTATGGGTTGTAAAAAAGAAATGAAATCTTTGCTTTCTTTAAATAATTTTCTTCTCATTTAGTCAAGGTTATTACTATATGAAGTACGAAGTATATGTTTTCTTTAATGTTTCATTATAAGTTGTGTAAAACACATTATTTATGATCTCTTAATTTTTTTTTTTTTTTAATAATCATCTCTTATAACATTAAGTCCTCTACGATTTCTTTTTATTCATTGTTGCAATACATTATCCATGATTTACTNTTAAAAAAAAAAAAAAAAAAAAAACTTGGTGCGTGGTCTAGTGAGTAACGATCTTCCCATTTTGTACCTACATGCATTGTTCATACTTCATAGATTATTTCCAATTGCATCAACTCACAAAATGACAACACTTATTTTTCAAAAAGTTACTAAAATGTACCACCAAAAACTTCATTGGATTCCATTATTTTGATTTGCTTTTATTAGATACTATGATATGATATGATGATACGAGAGCATTATTTATGTTCTTCAAGTTGCGTATGAGCAAACGTATAGTAACCCATACATATATAAGTCCAAATCGTAAAAAAGGAATTCATGATTAACCAACATGTCTTCTCATTCCAAATATGTCTCCTCACATAAACCGGAAAATCTCAAAACAACGAGGGACCTTTTTCATTTAATTCCTTATTTTGATTTGCTTTTATTAGATACTTGGTATGAATTGAACGTATTGTTTGTTTTCTTCAAGTTGTGTATGGGCAAATGCAAGGTAACCCATACATATGTAACTTAATGGTAAAAAAAAGAACCCATGATCAACCAACAGGTGTTCTGATTCCAAATACGTCACCATATGACCTTTTTCGTTGGATTCCTTGTTTTGATTTGCTTTTATTAGATACTTGATATGATGATATGAGCTCATTATATATATTCTTCAAATTGTGTATGGACAAACGTATGGTAACCCAAAATTATGTACTCCAGTCCTAATCGTAAAAAGAATAACTCATGATTAACCAACATGTATCCCGATTCCAAATCTATCCCCTAACTTAGACCATATTCTTTAGATTTGAGCTAAACTGAATTAAACTGAACAAAATGATCCTGAGCTGGACGGTCAATTAAATCCTAAAAACTGCAATTAAGCCAAAAAAATTATTCATTGTTACTCACTCCAATTCCAAAAATAAGAGTTATCACTCTTTTACTATAAGCAATCCATATAATAATATGTTAATCACTCCAATTCTAAAGATAAGAGTTATCACTCTTTTACTATAAGCAATCCATAATAATATAATAATAATAAATAGAATTAAATAAAGAATGTAAGTTCATAGCGTGGGACTTTGGCGTGTGTTTCTTAGTTTTCTGATTCTCTTCTTCTTCTCTCTCACACTCTCTCTCAGAAAAATCACAGAGAAAACTCACCATTTTTCATTCATTCTTCATTTCTCTCTCCTCTCTTTCTCTCTCCTCTGTCTCTCTCATCTTGATGCGTGAAGTTCAGAGCATCCACATTGCTGAAGAAAGAAACAGAGAGAGAAAGAGGAAGCCAAGTCTACAACAAATTCAAAAGCTTTCAAATGTTCGTTCTCTTCTTCCTCTCTGTTTTGATTAATTATTCGTCGTTTTTGGATTGAATTCGATCACAAAAGCTGCTGATTTTACAGTGATCATTTTCACCGCCATTTTCGATTTCATGTACTTGATTTATTTTTGGTTGGAATGTTTTCATAGGATTCTATATTCTTCTTTATTTGATCAATTATTCGTCGTTTTTTCGATTGAATTCGATTGCGAAAGCTGCTGATTTAACAGTGATCATTTTGACCGCCATTTTCGATTTTCATGTTCTTAATCAATTTTGTTTTCCTGAAATGTTTTGATGTGGAATGTTTTCATAGGATTCTACATTCTTCTTTATTTGATCAATTATTCGTTGTTTTTCAATTGAATTCGTTTGCGAAAGCTGATTTTAGATTTCATGCACTTGATTTTTGTTCTTTTTTCCTGAAATGTTTTAATTGAGTGAAGAAGTTATAAATGATTTGAAGATTTTGATAATTTTAGTTTATGATTTGTTTTGTTTTATGCGAGTTAGGCTAATTGATCCTGAATTAATGTAATGCAGTCGATTTTTGACTGTTGGAATTGAGCTGTAATATGCATATTATTAGTTGTTTTTCGATTGAATTCGACTGCAAAAGCTGATTTATCAGTGATCATTTTGACCGCCATTTCCGATTTCAATGTACTTGATTTTTGTTTTTTTCCTGAAATCTTTTGATGAAATTAAATGAAGATACTATGATTTTTTTTTTTTTATGGAAGATATCGATAATTAGCTTATGATTTGTTTCATTTATGTGAGGAATTAAGCTAATTGATCCTAAATTAATGTAATGCAGGTGATTTTTCGAATGTTGTAAATTGAGGTGTGATATGCATTATTGAGCAATCTGTAAATTTGTCGAAACACCTGGAATACTGGATAGATCTATGCTTGTCAATTTGTCGAAATAACAGGAATCATTCATACAGGTGAATTTTTTAATTATTTATTAGTGTTTATTTTATTTGATTTGTTGTCATATTTGATTTATCATGTTATTTATTTATGGGATGAAAATGTATTATAGGATTTGCTCAAATGAGTTGGAATCATCAACACATGGATTCACATTATGTTGGGAGCAATGCTCCTTACAATAGTGCTGGTAGTTTCATGGATTTTTTCGCCGGCCTTACCTATGATCATGTCAATTTCATCTTTTCTGGCTCACAAATTCAGGTGCTAATACTAAAACCTTGTTTATTGTGTGTTCTTTTCTATATCCGAATTCGTTTAATTCAATTTTCGTTATACAATTTAGACCTACCAAACGGGTCGGTCGGATCAGGTTGTTAAAATTATTTTCGGGTTAATTCGGGTCAGTCACTTTCGTGTTCGGGTTTGCAAATGTTTGTTCAGACTCGGAAGTTTCGGGTACTCAAATTCAACCCTAAAATGTAAAACCTTTTTTTTTATTGTGTGTTCTTTTCTATATGATTTTGTTATAAAAATTTAGACCTGTCAAACGGGTCGGTCGGGTCGGAATGTAAAAAATATTTTCAGGTTCATTCGGGTCGGTCGCTTTCGGGTTTGGGTTTACAAATGTTTGTTCAGACCCAGAACTTTCGGGTATTCAAATTCAACCATTAAATGACGTATAATTCAAATTAAAATCATATTACACCCAACAATAGTAACAAAAATGTGTTTACTATGCTTAAAATTCCTCATAATCTCATTTATTACTATAAATACAATGATTTTCAATCGGTAGGATTAAAAACGTGTTCGATCGGGTTTTGACCCGTTACTTTTCGGGTTGCTCGGGTTCGGATGAAATCGGGTTACGGGTCCTTGTTCAAGACCCAGTATTTCGGGTCGGGTCGGTTTTTGTCAGGTTTTCGCTATACATGGTTCTTGATTGTTATGATACATTAGCTCAATGGGATGTGTTTCTGAATGGTGCAGGATACTGCATATTCACCAGTTAGTGCTGGTTATTATAAATTCGGGTATTCAGATCCCGGGGCGACCCAGTACTACAATAATAACCCGTCTTATGATGTGTTCGATCACATAGTGGATGGTATAGATGATTACACACGAAGACCTGCTGATTTCCCTTCTAGTGAGCAGACAACTGGGACAAATCATCAGTCACAAAGAATGTCAAACACGAATGTAAATACGAGCAATCGAGATTGTAAGTTTTTCAAGTCTTTCTGGTGAAGTAATATATCTTCTGTAGATCCATATCAAGACTTTATGGTGTGTATTTGAAAGTTTATGGCTGCTGTCCTGTTGACTGGTGTTCCTGTCATGTTATCCTGATTGATTTCAGAAAAAGTGCAAATGTGCTTGTTGATTTCCAGGAATTTAGCATGGTTTCTTTACTGCAAATTGTCTGGGATTTCAGTTAGTTAATGTGTCATGATCAATTGAACTGCAACTGTGTTGAAGTATTTGTTTTTATAGTATACTTGTTCAGTTGTTCATGTTTCACATATACTAAGCAGAGGATGAACAAGCAGTATTTATTTAGCTATCATAAATTCTTGTACTTTTGAGCAAAATGTGGTTCTGTTTTATTGAACTGATCTTGAACATACATCATTTAGTGCGTGGTTTTATTTGTTCACTGCCCTCCTCTCATTTAGATTTCTGTGGTTTTAATTCCATGGAAAGTTAATGGTGCTATTGTTATCATTTTAATATTTTATACATGTCTATTAATAGACATGTCAAGCTTGCTTTTGGAAACTTGGAAGTAATAATTACCATGAAACATACTGTTTCGTGGTCTAATTTTATAATGGCCTTAGCATCCAATATGTTATTGCACTAGCACTCATTGTCAAGTTTTGTGCCTTCTTCTGAGACTGATGGTTGCTTGAAGCATTTTCTTGACTAATACTCTTGAACTTTCAGGTCCTAGGAGTCGTCACAATTCTCAAGATTACCAGGTAAAGTTGGCGACCTTCATCAGAAATAAGATTTTGTTCTTTAAGTGAATATATATTTTGAGCTTTTGACCCCACTGTTTTCGTAGATTAGGTGACAGTCAATGGGTGTATGAATTAGCTTCATGTTTTAGGTTGATGTATCATATCAAGCTCACTTATTTTCTGCAATTTTATTTGAAAATGGAACAGTTAATATTCAGCACATCACACTTAATTAGCAAAACCCTCATTTGTTAATACAGATTACTTAATAGTAGTAATAGGGAAATCTGGTCCTCTTTTTTCTTAAAGATCATTAAGCATTCTACCTTTAGATTGTTGGTAGAAATTCCGTTCCTGCACCCGTACTTAGCACCAGCCTGCATCTAATTGAGATTTCCCCTTGAAATTATGTAGCAAATACACGGTTTAATTTGACTGTTATTGTTGAATGCAGGCTATTTGGCAAGATCATATAGATCCAGATAACATGACTTATGAGGTTTAGCATCTTTCTCTTCTTTTTCTTCCTGCTTTTCTTCTTTTGTGGTATCTTTGTATATTTCATCCATACTTTTATGTCTTCCTATAGATTTAATGATAATATGAAACAAAACACTATGTTTTGTGGTATCTTTGTATATTTCATCCATACTTTTATGTCTTCCTATAGATTTAATGATAATATGAAACAAAACACTATGTTTTGTGATATTTCTGCTGTGATATAGACATGTCCAATTAATACGTAGTAGTTTTTATTTTCCTTACCTAGACCATAAGTCCATGATAACTATGTAATACCAGTTACAACTTACAAGTAGACTTTGTCGATGGATTTGGATTTGTCTAAGCTCGCGTGGATGAGTATTTGACCCCTATTATGACTCGCATAAACGGGAAGAACCTTAAATTTGCCACAATTCAAGAAAGTAGTGATTGGAAATTTGGAATTCAGAAGAATATACTTAGGCTCCGTTTGGGTTGGTGTAAAACGTTCTTAGTGTAAATTGATTTTTCATGGAAAACATTTTCTAAGGGAAAACACAATTCTAAACTAGTTTTCCTTTGTTTGGTTCCTTATGAACCTTTTTCCTGAAACCATTGGTATTAAATCTTATAGCTTTCTAAATTATAAATGAAATTCAATCAAATATAGTTATCCTTGTATCAGTAACTTCCAGTGGCTATATGACTTCTCTTCATTAGCATATCTTTGCAATTGGCTCTAATAGAATGACAACTGAAAGTCATAACTTGATCAACTTATGGCTAAATATTATCTTTCTATATATCCTGGATGGTAGTAGAGTCTTCCTCTATTCTCTATCTCCCATAAAAAAACTGATGAATTATTCGCCTTCCTTTTGATCATGTAGGAATTACTTGAGTTGGGCGAGGCAGTTGGAACTCATAGTCGAGGTCTTTCCAAAGAACAGATTTCCATGCTCCCAGTTTCGAAGTTCAAGTGTTGTTTTTTCTTAAGGAACAGGTGCCGATCTGAAAGGTAGGAATGCTGTTCTTGTAGTTCATTATCACTACTTTTGTTAATTACTGTCACTTTTTTTGAGAATCCCTAATATGCTGTCAAATGAAATATATGATCTGATGTTGCCCATCTCCATTTACCTGTTTGCTAGAAAGAAAACTTAAATACTTCCTGTCAGCGAAATAGTCTGTATTACCATGCTCGTTTTATCTTCATTAAGTATAGTCTGTAGTTCCTTCCAATTGGCCGTGGGCTGGGTCGGGCTTCAGGCCGAGCCCACAGGTCGTGGGCCTAACCGGACCGGGCCCGCACCATGTCCATATTGTATCGCGCCGGGCCGAAAAGTTCAAAATAGGGCCCGGCCCAAGCCCACATGCTTTCGTACCGGGCCGGCGTGCCTATGGCTAATTTTACTAAATTAAGCGTGTCTTGTCGTGCTTTTTCCAAAAATTTAAGGCCCAGGCCCGGCCCACAGCCCACGACTTCGTGCCCGTGCCAGGCCTTGCTTTTTTCGTGCTTGTGTTGGGCCGGGTCCAGACCGGCCCTGCCACAGCCATCTTTAATCAGTTCAACCAAACATCATTTCCTACTTCCTAGGAAATATCAATACATGGGAAAAATCTTCTTCCTAGGAACTTTTACTTCCTATGGTCAACCAAACAATACCTAAGTGTAATAACGTAAATTATACTCCGTAATGTTAGTTTACAGATTTTAGGAATCGTCTTCTGCAATATATTAGATCTACTTTCAGAGTTTCAGGAATTGTTTTCAGGAACACTACTGTGTGCTTAGAAACATCAGCTGTTCTGATTCAATTATAGTTTTTATTTGATACAGTGTCCTCTAATTCCTGTGCCACCACCCTTAAAATTGACAGCTTTTTATGTGTTTCTTTTGAAGCAGATGTGTAATTTGTCAGATGGAATACAAACGTAAAGATCGTTTAATTACCCTTCCCTGCAAACACAAGTATCATATGGGCTGCGGAACCAAATGGCTAACCATCAATAAGGTATAAAAGCAGCATCACCACTTCATAGTTTGACGACTTAGGCTCTGTTCTGTTCACCTTATTTTCACTTATTTCAGAAAAATAAGTTCAGTTAAGTTCAAATAAGTTTAGATAAGATAAGTTCAGGAAAAATAAGGGTTGACCAAGTATAATTTATAACTAAATTAAGTTCTAATAAGTTCAGATAAGTTCAGTTAAGTTCAGATAAGTTCATTTAACATAAGTTCATGAAAAATAAGTGAAAATTAGGTGAATGGAACGACCCTTAAGCTTTGTTCTGTTGTTCATCTTATTTTCACTTATTTCAGGAAACATAAAATCAGTTAAGTTCAGATAAGTTCCGATAAGTTCAGGAAAAATAAGGGTTGACAAAGTACAATATATAACTAAAATAAGTTTTGATAAGTTCTAATTAATCCAGTTAAGTTATGATAAGTTCACTTAAGTTCAGATAAGATAGGTTAAGGAAAAATAAGTGAAAATCAGGTGAATAGAACGCACCCTTGTGTATCTCTAATTGCTACTAACAATCCCGTCTTTTTTCCAGGCTTGCCCGATTTGTTACACAGAAGTGTCCATAGGAGCACACAAAAAGTTTAAGTAGCTTGCCTCGGGTTAGCATAAAAGAAGAAAAATGTTCATTTTGTTATTCTTTTTTTTCGACTTGGTGGTTCTTTTTCTCCTATAGATCCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCACTTTCCATTAGTAGGGTTTGTCACTTGCTAGTTCATACTAGTGAACTTATAGACTTATAGTAGAGTTATATATAGACTTTGGATCCATGGGTATATGGGTTTCCGAAATGGATCGAGGTTTGATTTTATGATTTCCATAAAAAGTTGTAGTAGAATTACTTGTACAGTTCCCTCTCTCTCATGGCACATTGGAATTTAGCCACAAAATCAGCCTGGATAGATTGTCTGAAATATGTTTGCACCATGA

mRNA sequence

ATGAAGATGTTTTTCATGATTGATTGTGTTAAGCTCTGCTATTGGTTGGAAGAAATCAAAGTTGTTATTCTATTAAAGAAACAGAGAGAGAAAGAGGAAGCCAAGTCTACAACAAATTCAAAAGCTTTCAAATGTGATTTTTCGAATGTTATCTATGCTTGTCAATTTGTCGAAATAACAGGAATCATTCATACAGGATTTGCTCAAATGAGTTGGAATCATCAACACATGGATTCACATTATGTTGGGAGCAATGCTCCTTACAATAGTGCTGGTAGTTTCATGGATTTTTTCGCCGGCCTTACCTATGATCATGTCAATTTCATCTTTTCTGGCTCACAAATTCAGGATACTGCATATTCACCAGTTAGTGCTGGTTATTATAAATTCGGGTATTCAGATCCCGGGGCGACCCAGTACTACAATAATAACCCGTCTTATGATGTGTTCGATCACATAGTGGATGGTATAGATGATTACACACGAAGACCTGCTGATTTCCCTTCTAGTGAGCAGACAACTGGGACAAATCATCAGTCACAAAGAATGTCAAACACGAATGTAAATACGAGCAATCGAGATTGTCCTAGGAGTCGTCACAATTCTCAAGATTACCAGGCTATTTGGCAAGATCATATAGATCCAGATAACATGACTTATGAGGAATTACTTGAGTTGGGCGAGGCAGTTGGAACTCATAGTCGAGGTCTTTCCAAAGAACAGATTTCCATGCTCCCAGTTTCGAAGTTCAAGTGTTGTTTTTTCTTAAGGAACAGGTGCCGATCTGAAAGATGTGTAATTTGTCAGATGGAATACAAACGTAAAGATCGTTTAATTACCCTTCCCTGCAAACACAAGTATCATATGGGCTGCGGAACCAAATGGCTAACCATCAATAAGGCTTGCCCGATTTGTTACACAGAAGTGTCCATAGGAGCACACAAAAAGTTTAAGTAGCTTGCCTCGGGTTAGCATAAAAGAAGAAAAATGTTCATTTTGTTATTCTTTTTTTTCGACTTGGTGGTTCTTTTTCTCCTATAGATCCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCACTTTCCATTAGTAGGGTTTGTCACTTGCTAGTTCATACTAGTGAACTTATAGACTTATAGTAGAGTTATATATAGACTTTGGATCCATGGGTATATGGGTTTCCGAAATGGATCGAGGTTTGATTTTATGATTTCCATAAAAAGTTGTAGTAGAATTACTTGTACAGTTCCCTCTCTCTCATGGCACATTGGAATTTAGCCACAAAATCAGCCTGGATAGATTGTCTGAAATATGTTTGCACCATGA

Coding sequence (CDS)

ATGAAGATGTTTTTCATGATTGATTGTGTTAAGCTCTGCTATTGGTTGGAAGAAATCAAAGTTGTTATTCTATTAAAGAAACAGAGAGAGAAAGAGGAAGCCAAGTCTACAACAAATTCAAAAGCTTTCAAATGTGATTTTTCGAATGTTATCTATGCTTGTCAATTTGTCGAAATAACAGGAATCATTCATACAGGATTTGCTCAAATGAGTTGGAATCATCAACACATGGATTCACATTATGTTGGGAGCAATGCTCCTTACAATAGTGCTGGTAGTTTCATGGATTTTTTCGCCGGCCTTACCTATGATCATGTCAATTTCATCTTTTCTGGCTCACAAATTCAGGATACTGCATATTCACCAGTTAGTGCTGGTTATTATAAATTCGGGTATTCAGATCCCGGGGCGACCCAGTACTACAATAATAACCCGTCTTATGATGTGTTCGATCACATAGTGGATGGTATAGATGATTACACACGAAGACCTGCTGATTTCCCTTCTAGTGAGCAGACAACTGGGACAAATCATCAGTCACAAAGAATGTCAAACACGAATGTAAATACGAGCAATCGAGATTGTCCTAGGAGTCGTCACAATTCTCAAGATTACCAGGCTATTTGGCAAGATCATATAGATCCAGATAACATGACTTATGAGGAATTACTTGAGTTGGGCGAGGCAGTTGGAACTCATAGTCGAGGTCTTTCCAAAGAACAGATTTCCATGCTCCCAGTTTCGAAGTTCAAGTGTTGTTTTTTCTTAAGGAACAGGTGCCGATCTGAAAGATGTGTAATTTGTCAGATGGAATACAAACGTAAAGATCGTTTAATTACCCTTCCCTGCAAACACAAGTATCATATGGGCTGCGGAACCAAATGGCTAACCATCAATAAGGCTTGCCCGATTTGTTACACAGAAGTGTCCATAGGAGCACACAAAAAGTTTAAGTAG

Protein sequence

MKMFFMIDCVKLCYWLEEIKVVILLKKQREKEEAKSTTNSKAFKCDFSNVIYACQFVEITGIIHTGFAQMSWNHQHMDSHYVGSNAPYNSAGSFMDFFAGLTYDHVNFIFSGSQIQDTAYSPVSAGYYKFGYSDPGATQYYNNNPSYDVFDHIVDGIDDYTRRPADFPSSEQTTGTNHQSQRMSNTNVNTSNRDCPRSRHNSQDYQAIWQDHIDPDNMTYEELLELGEAVGTHSRGLSKEQISMLPVSKFKCCFFLRNRCRSERCVICQMEYKRKDRLITLPCKHKYHMGCGTKWLTINKACPICYTEVSIGAHKKFK

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo15718.1	Spo15718.1	mRNA

Homology

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BLAST of Spo15718.1 vs. NCBI nr
Match: gi|902224954|gb|KNA19928.1| (hypothetical protein SOVF_057050 [Spinacia oleracea])

HSP 1 Score: 527.7 bits (1358), Expect = 1.400e-146
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 1


		  
Query: 70  MSWNHQHMDSHYVGSNAPYNSAGSFMDFFAGLTYDHVNFIFSGSQIQDTAYSPVSAGYYK 129
           MSWNHQHMDSHYVGSNAPYNSAGSFMDFFAGLTYDHVNFIFSGSQIQDTAYSPVSAGYYK
Sbjct: 1   MSWNHQHMDSHYVGSNAPYNSAGSFMDFFAGLTYDHVNFIFSGSQIQDTAYSPVSAGYYK 60

Query: 130 FGYSDPGATQYYNNNPSYDVFDHIVDGIDDYTRRPADFPSSEQTTGTNHQSQRMSNTNVN 189
           FGYSDPGATQYYNNNPSYDVFDHIVDGIDDYTRRPADFPSSEQTTGTNHQSQRMSNTNVN
Sbjct: 61  FGYSDPGATQYYNNNPSYDVFDHIVDGIDDYTRRPADFPSSEQTTGTNHQSQRMSNTNVN 120

Query: 190 TSNRDCPRSRHNSQDYQAIWQDHIDPDNMTYEELLELGEAVGTHSRGLSKEQISMLPVSK 249
           TSNRDCPRSRHNSQDYQAIWQDHIDPDNMTYEELLELGEAVGTHSRGLSKEQISMLPVSK
Sbjct: 121 TSNRDCPRSRHNSQDYQAIWQDHIDPDNMTYEELLELGEAVGTHSRGLSKEQISMLPVSK 180

Query: 250 FKCCFFLRNRCRSERCVICQMEYKRKDRLITLPCKHKYHMGCGTKWLTINKACPICYTEV 309
           FKCCFFLRNRCRSERCVICQMEYKRKDRLITLPCKHKYHMGCGTKWLTINKACPICYTEV
Sbjct: 181 FKCCFFLRNRCRSERCVICQMEYKRKDRLITLPCKHKYHMGCGTKWLTINKACPICYTEV 240

Query: 310 SIGAHKKFK 319
           SIGAHKKFK
Sbjct: 241 SIGAHKKFK 249

[Close]

BLAST of Spo15718.1 vs. NCBI nr
Match: gi|731325636|ref|XP_010673617.1| (PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 422.2 bits (1084), Expect = 8.200e-115
Identity = 204/249 (81.93%), Postives = 224/249 (89.96%), Query Frame = 1


		  
Query: 70  MSWNHQHMDSHYVGSNAPYNSAGSFMDFFAGLTYDHVNFIFSGSQIQDTAYSPVSAGYYK 129
           MSWN Q  DS YVGSNAPYNSAGSFMDFFAGLTYDHVNFIFSGSQIQD+ YSPVSAGYYK
Sbjct: 1   MSWNMQ-ADSQYVGSNAPYNSAGSFMDFFAGLTYDHVNFIFSGSQIQDSVYSPVSAGYYK 60

Query: 130 FGYSDPGATQYYNNNPSYDVFDHIVDGIDDYTRRPADFPSSEQTTGTNHQSQRMSNTNVN 189
           FGYSDPGATQYY+N+ SY  FDHI  GI++YTRRP+DFPS EQTT   +Q +RMSN NVN
Sbjct: 61  FGYSDPGATQYYSNSSSYGDFDHI-PGINEYTRRPSDFPSREQTT--TNQPERMSNMNVN 120

Query: 190 TSNRDCPRSRHNSQDYQAIWQDHIDPDNMTYEELLELGEAVGTHSRGLSKEQISMLPVSK 249
           T N+DCPRS H+SQDYQ IWQD+IDPDNMTYEELLELGEAVGT +RGLS+EQIS+LP+S+
Sbjct: 121 TRNQDCPRSHHDSQDYQDIWQDNIDPDNMTYEELLELGEAVGTQTRGLSQEQISLLPISR 180

Query: 250 FKCCFFLRNRCRSERCVICQMEYKRKDRLITLPCKHKYHMGCGTKWLTINKACPICYTEV 309
           FKCCF LR +CRSERCVICQMEYKRKDRLITLPCKHKYH+GCGTKWL+INKACPICYTEV
Sbjct: 181 FKCCFLLRKKCRSERCVICQMEYKRKDRLITLPCKHKYHIGCGTKWLSINKACPICYTEV 240

Query: 310 SIGAHKKFK 319
            + A KKFK
Sbjct: 241 FVDASKKFK 245

[Close]

BLAST of Spo15718.1 vs. NCBI nr
Match: gi|566163722|ref|XP_002303894.2| (hypothetical protein POPTR_0003s20350g [Populus trichocarpa])

HSP 1 Score: 287.7 bits (735), Expect = 2.400e-74
Identity = 150/254 (59.06%), Postives = 186/254 (73.23%), Query Frame = 1


		  
Query: 70  MSWNHQHMDSHYVGSNAPYNSAGSFMDFFAGLTYDHVNFIFSG-SQIQDTAYSPVSAGYY 129
           M+WN   MD H + ++ PYNSAGSF+++F GLTYDHVNFIF+G S +QD+ Y  ++A +Y
Sbjct: 1   MNWNTL-MDGHSMNASYPYNSAGSFIEYFEGLTYDHVNFIFNGASHVQDSVYPSMNANFY 60

Query: 130 KFGYSDPGATQYYNNNPSYDVFDHIVDGIDDYTRRPADFPSSEQTTGTNHQSQRMSN--- 189
           KFG S PG+  YY+    Y+V++H +   ++Y RRP   PS   +T TN ++ R++    
Sbjct: 61  KFGLSPPGSASYYDPAYVYEVYNHGLRN-EEY-RRP---PSENSSTATNERTSRVNTEWE 120

Query: 190 TNVNTSNRD----CPRSRHNSQDYQAIWQDHIDPDNMTYEELLELGEAVGTHSRGLSKEQ 249
            N N S+ D    C R  HN QDYQAIWQDH+DPDNMTYEELLELGE VGT +RGLS+EQ
Sbjct: 121 VNENRSSHDDPVECLRRHHNVQDYQAIWQDHVDPDNMTYEELLELGETVGTQNRGLSQEQ 180

Query: 250 ISMLPVSKFKCCFFLRNRCRSERCVICQMEYKRKDRLITLPCKHKYHMGCGTKWLTINKA 309
           IS+LP SK+K  FF R + RSERCVICQMEYKR DR ITLPCKH YH GCGT+WL+INKA
Sbjct: 181 ISLLPTSKYKRSFFSRRKSRSERCVICQMEYKRGDRQITLPCKHIYHAGCGTRWLSINKA 240

Query: 310 CPICYTEVSIGAHK 316
           CPICY+EV   A K
Sbjct: 241 CPICYSEVFGDASK 248

[Close]

BLAST of Spo15718.1 vs. NCBI nr
Match: gi|743897597|ref|XP_011042092.1| (PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Populus euphratica])

HSP 1 Score: 287.3 bits (734), Expect = 3.200e-74
Identity = 148/254 (58.27%), Postives = 184/254 (72.44%), Query Frame = 1


		  
Query: 70  MSWNHQHMDSHYVGSNAPYNSAGSFMDFFAGLTYDHVNFIFSG-SQIQDTAYSPVSAGYY 129
           M+WN   MD HY+ ++ PYNSAGSF+++F GLTYDHVNFIF+G S +QD+ Y  ++A +Y
Sbjct: 1   MNWNTL-MDGHYMNASYPYNSAGSFIEYFEGLTYDHVNFIFNGASHVQDSVYPSMNANFY 60

Query: 130 KFGYSDPGATQYYNNNPSYDVFDHIVDGIDDYTRRPADFPSSEQTTGTNHQSQRMS---N 189
           KFG S PG+  YY+    Y+V +H +   ++Y R P +      +T TN ++ R++    
Sbjct: 61  KFGLSPPGSASYYDPAYVYEVHNHGLRN-EEYRRSPLE----NSSTATNERTSRVNAERE 120

Query: 190 TNVNTSNRD----CPRSRHNSQDYQAIWQDHIDPDNMTYEELLELGEAVGTHSRGLSKEQ 249
            N N S+ D    C R  HN QDYQAIWQDH+DPDNMTYEELLELGE VGT +RGLS+EQ
Sbjct: 121 VNENRSSHDDPVECLRRHHNVQDYQAIWQDHVDPDNMTYEELLELGETVGTQNRGLSQEQ 180

Query: 250 ISMLPVSKFKCCFFLRNRCRSERCVICQMEYKRKDRLITLPCKHKYHMGCGTKWLTINKA 309
           IS+LP SK+K  FF R + RSERCVICQMEYKR DR ITLPCKH YH GCGT+WL+INKA
Sbjct: 181 ISLLPTSKYKRSFFSRRKSRSERCVICQMEYKRGDRQITLPCKHIYHAGCGTRWLSINKA 240

Query: 310 CPICYTEVSIGAHK 316
           CPICY+EV   A K
Sbjct: 241 CPICYSEVFGDASK 248

[Close]

BLAST of Spo15718.1 vs. NCBI nr
Match: gi|225435474|ref|XP_002285497.1| (PREDICTED: E3 ubiquitin ligase BIG BROTHER [Vitis vinifera])

HSP 1 Score: 286.2 bits (731), Expect = 7.100e-74
Identity = 149/247 (60.32%), Postives = 185/247 (74.90%), Query Frame = 1


		  
Query: 70  MSWNHQHMDSHYVGSNAPYNSAGSFMDFFAGLTYDHVNFIFS-GSQIQDTAY-SPVSAGY 129
           MSWN Q MD+HY+ ++ PY++ GSFMD+F GL Y+HVNFIF+  S  Q++ Y S ++   
Sbjct: 1   MSWNPQ-MDAHYMNTSYPYSTVGSFMDYFEGLAYEHVNFIFATASHGQESPYASSMNTSL 60

Query: 130 YKFGYSDPGATQYYNNNPSYDVFDHIVDGIDDYTRRPADFPS--SEQTTGTNHQSQRMSN 189
           YKFG S+ G+T YY+ + +Y V DH V GI +Y R P +  +  ++Q    N Q +   N
Sbjct: 61  YKFGLSETGSTSYYDYDQAYVVNDH-VPGISEYRRTPENSSAITTDQIPTVNTQCE--GN 120

Query: 190 TNVNTSNR---DCPRSRHNSQDYQAIWQDHIDPDNMTYEELLELGEAVGTHSRGLSKEQI 249
           TN  T++    +CPRS  NSQDYQ IWQD+IDPDNMTYEELLELGEAVGT SRGLS+E I
Sbjct: 121 TNTTTTHATPVECPRSHPNSQDYQVIWQDNIDPDNMTYEELLELGEAVGTQSRGLSQELI 180

Query: 250 SMLPVSKFKCCFFLRNRCRSERCVICQMEYKRKDRLITLPCKHKYHMGCGTKWLTINKAC 309
           S+LP+SK+KC FF R + R ERCVICQMEYKR+DRLITLPCKH YH  CGT+WL+INKAC
Sbjct: 181 SLLPISKYKCGFFTRKKSRCERCVICQMEYKRRDRLITLPCKHVYHAACGTRWLSINKAC 240

[Close]

BLAST of Spo15718.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RKA2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_057050 PE=4 SV=1)

HSP 1 Score: 527.7 bits (1358), Expect = 9.700e-147
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 1


		  
Query: 70  MSWNHQHMDSHYVGSNAPYNSAGSFMDFFAGLTYDHVNFIFSGSQIQDTAYSPVSAGYYK 129
           MSWNHQHMDSHYVGSNAPYNSAGSFMDFFAGLTYDHVNFIFSGSQIQDTAYSPVSAGYYK
Sbjct: 1   MSWNHQHMDSHYVGSNAPYNSAGSFMDFFAGLTYDHVNFIFSGSQIQDTAYSPVSAGYYK 60

Query: 130 FGYSDPGATQYYNNNPSYDVFDHIVDGIDDYTRRPADFPSSEQTTGTNHQSQRMSNTNVN 189
           FGYSDPGATQYYNNNPSYDVFDHIVDGIDDYTRRPADFPSSEQTTGTNHQSQRMSNTNVN
Sbjct: 61  FGYSDPGATQYYNNNPSYDVFDHIVDGIDDYTRRPADFPSSEQTTGTNHQSQRMSNTNVN 120

Query: 190 TSNRDCPRSRHNSQDYQAIWQDHIDPDNMTYEELLELGEAVGTHSRGLSKEQISMLPVSK 249
           TSNRDCPRSRHNSQDYQAIWQDHIDPDNMTYEELLELGEAVGTHSRGLSKEQISMLPVSK
Sbjct: 121 TSNRDCPRSRHNSQDYQAIWQDHIDPDNMTYEELLELGEAVGTHSRGLSKEQISMLPVSK 180

Query: 250 FKCCFFLRNRCRSERCVICQMEYKRKDRLITLPCKHKYHMGCGTKWLTINKACPICYTEV 309
           FKCCFFLRNRCRSERCVICQMEYKRKDRLITLPCKHKYHMGCGTKWLTINKACPICYTEV
Sbjct: 181 FKCCFFLRNRCRSERCVICQMEYKRKDRLITLPCKHKYHMGCGTKWLTINKACPICYTEV 240

Query: 310 SIGAHKKFK 319
           SIGAHKKFK
Sbjct: 241 SIGAHKKFK 249

[Close]

BLAST of Spo15718.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CR18_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g072440 PE=4 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 5.700e-115
Identity = 204/249 (81.93%), Postives = 224/249 (89.96%), Query Frame = 1


		  
Query: 70  MSWNHQHMDSHYVGSNAPYNSAGSFMDFFAGLTYDHVNFIFSGSQIQDTAYSPVSAGYYK 129
           MSWN Q  DS YVGSNAPYNSAGSFMDFFAGLTYDHVNFIFSGSQIQD+ YSPVSAGYYK
Sbjct: 1   MSWNMQ-ADSQYVGSNAPYNSAGSFMDFFAGLTYDHVNFIFSGSQIQDSVYSPVSAGYYK 60

Query: 130 FGYSDPGATQYYNNNPSYDVFDHIVDGIDDYTRRPADFPSSEQTTGTNHQSQRMSNTNVN 189
           FGYSDPGATQYY+N+ SY  FDHI  GI++YTRRP+DFPS EQTT   +Q +RMSN NVN
Sbjct: 61  FGYSDPGATQYYSNSSSYGDFDHI-PGINEYTRRPSDFPSREQTT--TNQPERMSNMNVN 120

Query: 190 TSNRDCPRSRHNSQDYQAIWQDHIDPDNMTYEELLELGEAVGTHSRGLSKEQISMLPVSK 249
           T N+DCPRS H+SQDYQ IWQD+IDPDNMTYEELLELGEAVGT +RGLS+EQIS+LP+S+
Sbjct: 121 TRNQDCPRSHHDSQDYQDIWQDNIDPDNMTYEELLELGEAVGTQTRGLSQEQISLLPISR 180

Query: 250 FKCCFFLRNRCRSERCVICQMEYKRKDRLITLPCKHKYHMGCGTKWLTINKACPICYTEV 309
           FKCCF LR +CRSERCVICQMEYKRKDRLITLPCKHKYH+GCGTKWL+INKACPICYTEV
Sbjct: 181 FKCCFLLRKKCRSERCVICQMEYKRKDRLITLPCKHKYHIGCGTKWLSINKACPICYTEV 240

Query: 310 SIGAHKKFK 319
            + A KKFK
Sbjct: 241 FVDASKKFK 245

[Close]

BLAST of Spo15718.1 vs. UniProtKB/TrEMBL
Match: B9GWA5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s20350g PE=4 SV=2)

HSP 1 Score: 287.7 bits (735), Expect = 1.700e-74
Identity = 150/254 (59.06%), Postives = 186/254 (73.23%), Query Frame = 1


		  
Query: 70  MSWNHQHMDSHYVGSNAPYNSAGSFMDFFAGLTYDHVNFIFSG-SQIQDTAYSPVSAGYY 129
           M+WN   MD H + ++ PYNSAGSF+++F GLTYDHVNFIF+G S +QD+ Y  ++A +Y
Sbjct: 1   MNWNTL-MDGHSMNASYPYNSAGSFIEYFEGLTYDHVNFIFNGASHVQDSVYPSMNANFY 60

Query: 130 KFGYSDPGATQYYNNNPSYDVFDHIVDGIDDYTRRPADFPSSEQTTGTNHQSQRMSN--- 189
           KFG S PG+  YY+    Y+V++H +   ++Y RRP   PS   +T TN ++ R++    
Sbjct: 61  KFGLSPPGSASYYDPAYVYEVYNHGLRN-EEY-RRP---PSENSSTATNERTSRVNTEWE 120

Query: 190 TNVNTSNRD----CPRSRHNSQDYQAIWQDHIDPDNMTYEELLELGEAVGTHSRGLSKEQ 249
            N N S+ D    C R  HN QDYQAIWQDH+DPDNMTYEELLELGE VGT +RGLS+EQ
Sbjct: 121 VNENRSSHDDPVECLRRHHNVQDYQAIWQDHVDPDNMTYEELLELGETVGTQNRGLSQEQ 180

Query: 250 ISMLPVSKFKCCFFLRNRCRSERCVICQMEYKRKDRLITLPCKHKYHMGCGTKWLTINKA 309
           IS+LP SK+K  FF R + RSERCVICQMEYKR DR ITLPCKH YH GCGT+WL+INKA
Sbjct: 181 ISLLPTSKYKRSFFSRRKSRSERCVICQMEYKRGDRQITLPCKHIYHAGCGTRWLSINKA 240

Query: 310 CPICYTEVSIGAHK 316
           CPICY+EV   A K
Sbjct: 241 CPICYSEVFGDASK 248

[Close]

BLAST of Spo15718.1 vs. UniProtKB/TrEMBL
Match: D7SL69_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g01930 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 4.900e-74
Identity = 149/247 (60.32%), Postives = 185/247 (74.90%), Query Frame = 1


		  
Query: 70  MSWNHQHMDSHYVGSNAPYNSAGSFMDFFAGLTYDHVNFIFS-GSQIQDTAY-SPVSAGY 129
           MSWN Q MD+HY+ ++ PY++ GSFMD+F GL Y+HVNFIF+  S  Q++ Y S ++   
Sbjct: 1   MSWNPQ-MDAHYMNTSYPYSTVGSFMDYFEGLAYEHVNFIFATASHGQESPYASSMNTSL 60

Query: 130 YKFGYSDPGATQYYNNNPSYDVFDHIVDGIDDYTRRPADFPS--SEQTTGTNHQSQRMSN 189
           YKFG S+ G+T YY+ + +Y V DH V GI +Y R P +  +  ++Q    N Q +   N
Sbjct: 61  YKFGLSETGSTSYYDYDQAYVVNDH-VPGISEYRRTPENSSAITTDQIPTVNTQCE--GN 120

Query: 190 TNVNTSNR---DCPRSRHNSQDYQAIWQDHIDPDNMTYEELLELGEAVGTHSRGLSKEQI 249
           TN  T++    +CPRS  NSQDYQ IWQD+IDPDNMTYEELLELGEAVGT SRGLS+E I
Sbjct: 121 TNTTTTHATPVECPRSHPNSQDYQVIWQDNIDPDNMTYEELLELGEAVGTQSRGLSQELI 180

Query: 250 SMLPVSKFKCCFFLRNRCRSERCVICQMEYKRKDRLITLPCKHKYHMGCGTKWLTINKAC 309
           S+LP+SK+KC FF R + R ERCVICQMEYKR+DRLITLPCKH YH  CGT+WL+INKAC
Sbjct: 181 SLLPISKYKCGFFTRKKSRCERCVICQMEYKRRDRLITLPCKHVYHAACGTRWLSINKAC 240

[Close]

BLAST of Spo15718.1 vs. UniProtKB/TrEMBL
Match: A0A061GTY3_THECC (RING/U-box superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_040623 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 6.400e-74
Identity = 143/249 (57.43%), Postives = 180/249 (72.29%), Query Frame = 1


		  
Query: 70  MSWNHQHMDSHYVGSNAPYNSAGSFMDFFAGLTYDHVNFIFSG-SQIQDTAYSPVSAGYY 129
           MSWN  HM+  Y+ S+ PYNSAGSFM++F GLTY HVNFIF G S +Q++ Y  +++ +Y
Sbjct: 1   MSWN-PHMEVQYINSSYPYNSAGSFMEYFEGLTYQHVNFIFDGASHVQESVYPSMTSSFY 60

Query: 130 KFGYSDPGATQYYNNNPSYDVFDHIVDGIDDYTRRPADFPS--SEQTTGTNHQSQRMSNT 189
           KFG SD G   YY++  +Y+V +H +  +D+Y R   +  S  +EQT   N + +   NT
Sbjct: 61  KFGLSDSGNISYYDHGHNYEVNNHELC-VDEYRRASENSSSMSNEQTAAMNMEWEGNVNT 120

Query: 190 NVNTSNRDCPRSRHNSQDYQAIWQDHIDPDNMTYEELLELGEAVGTHSRGLSKEQISMLP 249
               +  DCPR +HN  DYQ +WQD +DPDNMTYEELLELGE VGT SRGLS+E IS+LP
Sbjct: 121 MSRENPVDCPRRQHNGLDYQVVWQDSVDPDNMTYEELLELGETVGTQSRGLSQELISLLP 180

Query: 250 VSKFKCCFFLRNRCRSERCVICQMEYKRKDRLITLPCKHKYHMGCGTKWLTINKACPICY 309
           VSK+KC  F R + R+ERCVICQMEYKR +R ITLPCKH YH GCG++WL+INKACPICY
Sbjct: 181 VSKYKCSLFSRKKSRNERCVICQMEYKRGERRITLPCKHVYHAGCGSRWLSINKACPICY 240

Query: 310 TEVSIGAHK 316
           TEV   A K
Sbjct: 241 TEVFGDASK 247

[Close]

BLAST of Spo15718.1 vs. ExPASy Swiss-Prot
Match: BB_ARATH (E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana GN=BB PE=1 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 4.200e-42
Identity = 101/244 (41.39%), Postives = 138/244 (56.56%), Query Frame = 1


		  
Query: 78  DSHYVGSNAPYNSAGSFMDFFAG-----LTYDHVNFIFSGSQIQDTAYSPVSAGYYKFGY 137
           D+HY  +  PY + GS+MDF+ G     L YDH   +      QD  Y  ++   YKFG+
Sbjct: 10  DAHYTETGFPYAATGSYMDFYGGAAQGPLNYDHAATMHP----QDNLYWTMNTNAYKFGF 69

Query: 138 SDPGATQYYNNNPSYDVFDHIVD---GIDDYTRRP----ADFPSSEQTTGTNHQSQRMSN 197
           S      +Y    SYD+ DH+     G  ++   P    AD P +     T  +S ++ +
Sbjct: 70  SGSDNASFYG---SYDMNDHLSRMSIGRTNWDYHPMVNVADDPEN-----TVARSVQIGD 129

Query: 198 TNVNTSNRDCPRSRHNSQDYQAIWQDHIDPDNMTYEELLELGEAVGTHSRGLSKEQISML 257
           T+ ++   +C  + H+    Q  WQD IDPD MTYEEL+ELGEAVGT SRGLS+E I  L
Sbjct: 130 TDEHSEAEECIANEHDPDSPQVSWQDDIDPDTMTYEELVELGEAVGTESRGLSQELIETL 189

Query: 258 PVSKFKCCFFLRNRCRSERCVICQMEYKRKDRLITLPCKHKYHMGCGTKWLTINKACPIC 310
           P  K+K       +   ERCVICQ++YK  +R + LPCKH YH  C +KWL+INK CP+C
Sbjct: 190 PTKKYKFGSIFSRKRAGERCVICQLKYKIGERQMNLPCKHVYHSECISKWLSINKVCPVC 241

[Close]

BLAST of Spo15718.1 vs. ExPASy Swiss-Prot
Match: BBR_ARATH (E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana GN=BBR PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 7.400e-23
Identity = 56/117 (47.86%), Postives = 71/117 (60.68%), Query Frame = 1


		  
Query: 194 DCPRSRHNSQDYQAIWQDHIDPDNMTYEELLELGEAVGTHSRGLSKEQISMLPVSKFKCC 253
           D     H SQD    W D +DPD ++YEELL LG+ VGT SRGLS + I+ LP  ++K  
Sbjct: 223 DLEDESHTSQD---AW-DEMDPDELSYEELLALGDIVGTESRGLSADTIASLPSKRYK-- 282

Query: 254 FFLRNRCRSERCVICQMEYKRKDRLITLPCKHKYHMGCGTKWLTINKACPICYTEVS 311
                   +E CVIC+++Y+  + LI LPCKH YH  C   WL INK CP+C  EVS
Sbjct: 283 EGDNQNGTNESCVICRLDYEDDEDLILLPCKHSYHSECINNWLKINKVCPVCSAEVS 333

[Close]

BLAST of Spo15718.1 vs. ExPASy Swiss-Prot
Match: HIP1_ORYSJ (Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza sativa subsp. japonica GN=HIP1 PE=1 SV=2)

HSP 1 Score: 85.1 bits (209), Expect = 1.500e-15
Identity = 41/93 (44.09%), Postives = 54/93 (58.06%), Query Frame = 1


		  
Query: 213 IDPDNMTYEELLELGEAVGTHSRGLSKEQISMLPVSKFKCCFFLRNRCRSERCVICQMEY 272
           +D DNM+YEELL L E +G  S GLS+E+++ L   +    + L      E C ICQ EY
Sbjct: 568 LDIDNMSYEELLALEERIGNVSTGLSEEEVTKLLKQRKFSSWRLEASVEEEPCCICQEEY 627

Query: 273 KRKDRLITLPCKHKYHMGCGTKWLTINKACPIC 306
              D L TL C H +H+GC  +WL +   CPIC
Sbjct: 628 VDGDDLGTLDCGHDFHVGCVRQWLVVKNTCPIC 660

[Close]

BLAST of Spo15718.1 vs. ExPASy Swiss-Prot
Match: MBR2_ARATH (E3 ubiquitin-protein ligase MBR2 OS=Arabidopsis thaliana GN=MBR2 PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 8.200e-14
Identity = 40/95 (42.11%), Postives = 51/95 (53.68%), Query Frame = 1


		  
Query: 213 IDPDNMTYEELLELGEAVGTHSRGLSKEQISMLPVSKFKCCFFLRNRCRSERCVICQMEY 272
           +D DNM+YEELL LGE +G  S GLS+E I  +            +    E C +CQ EY
Sbjct: 567 LDVDNMSYEELLALGERIGDVSTGLSEEVILKVMKQHKHTSSAAGSHQDMEPCCVCQEEY 626

Query: 273 KRKDRLITLPCKHKYHMGCGTKWLTINKACPICYT 308
              D L TL C H++H  C  +WL +   CPIC T
Sbjct: 627 AEGDDLGTLGCGHEFHTACVKQWLMLKNLCPICKT 661

[Close]

BLAST of Spo15718.1 vs. ExPASy Swiss-Prot
Match: MBR1_ARATH (E3 ubiquitin-protein ligase MBR1 OS=Arabidopsis thaliana GN=MBR1 PE=1 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.400e-13
Identity = 45/106 (42.45%), Postives = 54/106 (50.94%), Query Frame = 1


		  
Query: 213 IDPDNMTYEELLELGEAVGTHSRGLSKEQI----------SMLPVSKFKCCFFLRNRCRS 272
           +D DNM+YEELL LGE +G  S GLS+E I          S  P S       +      
Sbjct: 601 LDVDNMSYEELLALGERIGDVSTGLSEEVILKAMKQHKHTSSSPSS-------VELHQNI 660

Query: 273 ERCVICQMEYKRKDRLITLPCKHKYHMGCGTKWLTINKACPICYTE 309
           E C ICQ EY   D L TL C H++H  C  +W+ I   CPIC TE
Sbjct: 661 EPCCICQEEYVEGDNLGTLKCGHEFHKDCIKQWVMIKNLCPICKTE 699

[Close]

BLAST of Spo15718.1 vs. TAIR (Arabidopsis)
Match: AT3G63530.1 (RING/U-box superfamily protein)

HSP 1 Score: 173.3 bits (438), Expect = 2.400e-43
Identity = 101/244 (41.39%), Postives = 138/244 (56.56%), Query Frame = 1


		  
Query: 78  DSHYVGSNAPYNSAGSFMDFFAG-----LTYDHVNFIFSGSQIQDTAYSPVSAGYYKFGY 137
           D+HY  +  PY + GS+MDF+ G     L YDH   +      QD  Y  ++   YKFG+
Sbjct: 10  DAHYTETGFPYAATGSYMDFYGGAAQGPLNYDHAATMHP----QDNLYWTMNTNAYKFGF 69

Query: 138 SDPGATQYYNNNPSYDVFDHIVD---GIDDYTRRP----ADFPSSEQTTGTNHQSQRMSN 197
           S      +Y    SYD+ DH+     G  ++   P    AD P +     T  +S ++ +
Sbjct: 70  SGSDNASFYG---SYDMNDHLSRMSIGRTNWDYHPMVNVADDPEN-----TVARSVQIGD 129

Query: 198 TNVNTSNRDCPRSRHNSQDYQAIWQDHIDPDNMTYEELLELGEAVGTHSRGLSKEQISML 257
           T+ ++   +C  + H+    Q  WQD IDPD MTYEEL+ELGEAVGT SRGLS+E I  L
Sbjct: 130 TDEHSEAEECIANEHDPDSPQVSWQDDIDPDTMTYEELVELGEAVGTESRGLSQELIETL 189

Query: 258 PVSKFKCCFFLRNRCRSERCVICQMEYKRKDRLITLPCKHKYHMGCGTKWLTINKACPIC 310
           P  K+K       +   ERCVICQ++YK  +R + LPCKH YH  C +KWL+INK CP+C
Sbjct: 190 PTKKYKFGSIFSRKRAGERCVICQLKYKIGERQMNLPCKHVYHSECISKWLSINKVCPVC 241

[Close]

BLAST of Spo15718.1 vs. TAIR (Arabidopsis)
Match: AT3G19910.1 (RING/U-box superfamily protein)

HSP 1 Score: 109.4 bits (272), Expect = 4.200e-24
Identity = 56/117 (47.86%), Postives = 71/117 (60.68%), Query Frame = 1


		  
Query: 194 DCPRSRHNSQDYQAIWQDHIDPDNMTYEELLELGEAVGTHSRGLSKEQISMLPVSKFKCC 253
           D     H SQD    W D +DPD ++YEELL LG+ VGT SRGLS + I+ LP  ++K  
Sbjct: 223 DLEDESHTSQD---AW-DEMDPDELSYEELLALGDIVGTESRGLSADTIASLPSKRYK-- 282

Query: 254 FFLRNRCRSERCVICQMEYKRKDRLITLPCKHKYHMGCGTKWLTINKACPICYTEVS 311
                   +E CVIC+++Y+  + LI LPCKH YH  C   WL INK CP+C  EVS
Sbjct: 283 EGDNQNGTNESCVICRLDYEDDEDLILLPCKHSYHSECINNWLKINKVCPVCSAEVS 333

[Close]

BLAST of Spo15718.1 vs. TAIR (Arabidopsis)
Match: AT3G47180.1 (RING/U-box superfamily protein)

HSP 1 Score: 99.0 bits (245), Expect = 5.600e-21
Identity = 47/104 (45.19%), Postives = 67/104 (64.42%), Query Frame = 1


		  
Query: 210 QDHIDPDNMTYEELLELGEAVGTHSRGLSKEQISM-LPVSKFKCCFFLRNRCRSERCVIC 269
           +D IDPD ++YEEL+ LG+ +G  +RGL+  +IS  L  S +    F  N+   +RCV+C
Sbjct: 109 EDEIDPDQLSYEELIALGDFIGVENRGLTPIEISTCLNASTY---VFSHNKNEIDRCVVC 168

Query: 270 QMEYKRKDRLITL-PCKHKYHMGCGTKWLTINKACPICYTEVSI 312
           QME++ ++ L+ L PC H YH  C TKWL   K CPIC +E S+
Sbjct: 169 QMEFEERESLVVLRPCDHPYHSECITKWLETKKICPICCSEPSV 209

[Close]

BLAST of Spo15718.1 vs. TAIR (Arabidopsis)
Match: AT5G52140.1 (RING/U-box superfamily protein)

HSP 1 Score: 92.8 bits (229), Expect = 4.000e-19
Identity = 59/153 (38.56%), Postives = 83/153 (54.25%), Query Frame = 1


		  
Query: 166 DFPSSEQTTGTNHQSQRMSNTNVNTSNRDCPRS-RHNSQDYQAIWQDHIDPDNMTYEELL 225
           D PSS +        +  S    +T +   P S  HN  D      ++ DP+NMTYEEL 
Sbjct: 134 DAPSSSRAIFHYDDGENFSGRYTHTHS---PSSISHNPTD-----DENNDPENMTYEELT 193

Query: 226 ELGEAVGTHSRGLSKEQISMLPVSKFKC------CFFLRNRCRSE--RCVICQMEYKRKD 285
           ELG++VG   +GLS+E+IS L   K+        C  ++ +  ++  +C IC MEY + D
Sbjct: 194 ELGDSVGDVGKGLSQERISRLRTHKYGTKTKSWYCLHMKKKFVADDSQCSICLMEYAKGD 253

Query: 286 RLITLPCKHKYHMGCGTKWLTINKACPICYTEV 310
           ++ TLPCKH YH  C ++WL  NK C IC  EV
Sbjct: 254 KITTLPCKHIYHKDCISQWLKQNKVCCICKAEV 278

[Close]

BLAST of Spo15718.1 vs. TAIR (Arabidopsis)
Match: AT1G73760.1 (RING/U-box superfamily protein)

HSP 1 Score: 82.4 bits (202), Expect = 5.500e-16
Identity = 40/101 (39.60%), Postives = 59/101 (58.42%), Query Frame = 1


		  
Query: 213 IDPDNMTYEELLELGEAVGTHSRGLSKEQISMLPVSKFKCCFFLRNRCRSE------RCV 272
           ++ DNMTYE+LLELGE +G  + GL+++QI        K C      CR +      +C+
Sbjct: 269 LNVDNMTYEQLLELGERIGHVNTGLTEKQI--------KSCLRKVKPCRQDTTVADRKCI 328

Query: 273 ICQMEYKRKDRLITLPCKHKYHMGCGTKWLTINKACPICYT 308
           ICQ EY+ KD +  L C H++H+ C  +WL    +CP+C T
Sbjct: 329 ICQDEYEAKDEVGELRCGHRFHIDCVNQWLVRKNSCPVCKT 361

The following BLAST results are available for this feature:

BLAST of Spo15718.1 vs. NCBI nr
BLAST of Spo15718.1 vs. UniProtKB/TrEMBL
BLAST of Spo15718.1 vs. ExPASy Swiss-Prot
BLAST of Spo15718.1 vs. TAIR (Arabidopsis)

BLAST of Spo15718.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902224954\|gb\|KNA19928.1\|	1.4e-146	100.	hypothetical protein SOVF_0570...	[more]
gi\|731325636\|ref\|XP_010673617.1\|	8.2e-115	81.9	PREDICTED: E3 ubiquitin ligase...	[more]
gi\|566163722\|ref\|XP_002303894.2\|	2.4e-74	59.0	hypothetical protein POPTR_000...	[more]
gi\|743897597\|ref\|XP_011042092.1\|	3.2e-74	58.2	PREDICTED: E3 ubiquitin ligase...	[more]
gi\|225435474\|ref\|XP_002285497.1\|	7.1e-74	60.3	PREDICTED: E3 ubiquitin ligase...	[more]

BLAST of Spo15718.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RKA2_SPIOL	9.7e-147	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8CR18_BETVU	5.7e-115	81.9	Uncharacterized protein OS=Bet...	[more]
B9GWA5_POPTR	1.7e-74	59.0	Uncharacterized protein OS=Pop...	[more]
D7SL69_VITVI	4.9e-74	60.3	Putative uncharacterized prote...	[more]
A0A061GTY3_THECC	6.4e-74	57.4	RING/U-box superfamily protein...	[more]

BLAST of Spo15718.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
BB_ARATH	4.2e-42	41.3	E3 ubiquitin ligase BIG BROTHE...	[more]
BBR_ARATH	7.4e-23	47.8	E3 ubiquitin ligase BIG BROTHE...	[more]
HIP1_ORYSJ	1.5e-15	44.0	Probable E3 ubiquitin-protein ...	[more]
MBR2_ARATH	8.2e-14	42.1	E3 ubiquitin-protein ligase MB...	[more]
MBR1_ARATH	2.4e-13	42.4	E3 ubiquitin-protein ligase MB...	[more]

BLAST of Spo15718.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT3G63530.1	2.4e-43	41.3	RING/U-box superfamily protein	[more]
AT3G19910.1	4.2e-24	47.8	RING/U-box superfamily protein	[more]
AT3G47180.1	5.6e-21	45.1	RING/U-box superfamily protein	[more]
AT5G52140.1	4.0e-19	38.5	RING/U-box superfamily protein	[more]
AT1G73760.1	5.5e-16	39.6	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 264..305 score: 2.2
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 265..305 score: 1.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 265..305 score: 1
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 262..309 score: 5.6
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 116..186 score: 9.6E-66coord: 208..309 score: 9.6
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 264..311 score: 2.94

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046621	negative regulation of organ growth
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006000	fructose metabolic process
biological_process	GO:0006013	mannose metabolic process
biological_process	GO:0006080	substituted mannan metabolic process
biological_process	GO:0008152	metabolic process
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0050896	response to stimulus
cellular_component	GO:0016020	membrane
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0004842	ubiquitin-protein transferase activity
molecular_function	GO:0016985	mannan endo-1,4-beta-mannosidase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0004672	protein kinase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo17474	0.70	Barchart \| Table
Spo04088	0.67	Barchart \| Table
Spo24089	0.66	Barchart \| Table
Spo05530	0.65	Barchart \| Table
Spo19665	0.65	Barchart \| Table