Spo15749 (gene) | SpinachBase

Overview


Name	Spo15749
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	BnaA07g17560D protein
Location	chr4 : 5947211 .. 5947609 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGAGGAAGAGGGAAAGGGAAGAAGCTAACCGTTACAAGCCACGATGATCCAGGAAGTGGCGAAGAGGAGAAGATTCCTGCTCAAAAAAGAAGAGGAAGACCTCAAAAGCCGTTGAAGGACAACGAGATCGACGAAGAAGAGTTACTCAAAATAGAAGAGGAAGATAGTGAGAACACAACAACAACCGCCATAGACAACGGTAAGAAGAGGAAAAGAAGCTCCCCATCAAAGGAGAAGTCCAGTTCAGTGAAAGAAGATAACAACAACAACAACAATGTTGTTGGAGCTACTTTAGTTTCAGATCTTTCAAACAAGCCTACCGGTTTCCGGCATATAGGGAGCCGCAGGAAAAACAAGCCTCGTCGAGCAGCTGAGGTCGGGGTTGAGTGCTAG

mRNA sequence

ATGGGAAGAGGAAGAGGGAAAGGGAAGAAGCTAACCGTTACAAGCCACGATGATCCAGGAAGTGGCGAAGAGGAGAAGATTCCTGCTCAAAAAAGAAGAGGAAGACCTCAAAAGCCGTTGAAGGACAACGAGATCGACGAAGAAGAGTTACTCAAAATAGAAGAGGAAGATAGTGAGAACACAACAACAACCGCCATAGACAACGGTAAGAAGAGGAAAAGAAGCTCCCCATCAAAGGAGAAGTCCAGTTCAGTGAAAGAAGATAACAACAACAACAACAATGTTGTTGGAGCTACTTTAGTTTCAGATCTTTCAAACAAGCCTACCGGTTTCCGGCATATAGGGAGCCGCAGGAAAAACAAGCCTCGTCGAGCAGCTGAGGTCGGGGTTGAGTGCTAG

Coding sequence (CDS)

ATGGGAAGAGGAAGAGGGAAAGGGAAGAAGCTAACCGTTACAAGCCACGATGATCCAGGAAGTGGCGAAGAGGAGAAGATTCCTGCTCAAAAAAGAAGAGGAAGACCTCAAAAGCCGTTGAAGGACAACGAGATCGACGAAGAAGAGTTACTCAAAATAGAAGAGGAAGATAGTGAGAACACAACAACAACCGCCATAGACAACGGTAAGAAGAGGAAAAGAAGCTCCCCATCAAAGGAGAAGTCCAGTTCAGTGAAAGAAGATAACAACAACAACAACAATGTTGTTGGAGCTACTTTAGTTTCAGATCTTTCAAACAAGCCTACCGGTTTCCGGCATATAGGGAGCCGCAGGAAAAACAAGCCTCGTCGAGCAGCTGAGGTCGGGGTTGAGTGCTAG

Protein sequence

MGRGRGKGKKLTVTSHDDPGSGEEEKIPAQKRRGRPQKPLKDNEIDEEELLKIEEEDSENTTTTAIDNGKKRKRSSPSKEKSSSVKEDNNNNNNVVGATLVSDLSNKPTGFRHIGSRRKNKPRRAAEVGVEC

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo15749.1	Spo15749.1	mRNA

Homology

[Close]

BLAST of Spo15749.1 vs. NCBI nr
Match: gi|902207436|gb|KNA15704.1| (hypothetical protein SOVF_095850 [Spinacia oleracea])

HSP 1 Score: 248.8 bits (634), Expect = 5.200e-63
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1


		  
Query: 1   MGRGRGKGKKLTVTSHDDPGSGEEEKIPAQKRRGRPQKPLKDNEIDEEELLKIEEEDSEN 60
           MGRGRGKGKKLTVTSHDDPGSGEEEKIPAQKRRGRPQKPLKDNEIDEEELLKIEEEDSEN
Sbjct: 1   MGRGRGKGKKLTVTSHDDPGSGEEEKIPAQKRRGRPQKPLKDNEIDEEELLKIEEEDSEN 60

Query: 61  TTTTAIDNGKKRKRSSPSKEKSSSVKEDNNNNNNVVGATLVSDLSNKPTGFRHIGSRRKN 120
           TTTTAIDNGKKRKRSSPSKEKSSSVKEDNNNNNNVVGATLVSDLSNKPTGFRHIGSRRKN
Sbjct: 61  TTTTAIDNGKKRKRSSPSKEKSSSVKEDNNNNNNVVGATLVSDLSNKPTGFRHIGSRRKN 120

Query: 121 KPRRAAEVGVEC 133
           KPRRAAEVGVEC
Sbjct: 121 KPRRAAEVGVEC 132

[Close]

BLAST of Spo15749.1 vs. NCBI nr
Match: gi|731325511|ref|XP_010673554.1| (PREDICTED: nucleolar and coiled-body phosphoprotein 1-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 186.8 bits (473), Expect = 2.400e-44
Identity = 104/135 (77.04%), Postives = 116/135 (85.93%), Query Frame = 1


		  
Query: 1   MGRGRGKGKKLTVTSHDDPGSGEEEKIPAQKRRGRPQKPLKDNEIDEEELLKIEEEDSEN 60
           MGRGRGKGKKLTVTSHDDPGSGEEEKIPAQKRRGRPQKPLKD ++DEEE++K EEE+SEN
Sbjct: 1   MGRGRGKGKKLTVTSHDDPGSGEEEKIPAQKRRGRPQKPLKD-DVDEEEVVKTEEEESEN 60

Query: 61  ---TTTTAIDNGKKRKRSSPSKEKSSSVKEDNNNNNNVVGATLVSDLSNKPTGFRHIGSR 120
              +   A++NGKKRKR+SP+KEK S VKE+       VGATLVSD+S KP GFRHIGSR
Sbjct: 61  KDSSVMVALENGKKRKRNSPTKEKQSPVKEE-----ITVGATLVSDISTKPNGFRHIGSR 120

Query: 121 RKNKPRRAAEVGVEC 133
           RKNKPRRAAEVGVEC
Sbjct: 121 RKNKPRRAAEVGVEC 129

[Close]

BLAST of Spo15749.1 vs. NCBI nr
Match: gi|703065085|ref|XP_010087361.1| (hypothetical protein L484_018387 [Morus notabilis])

HSP 1 Score: 161.8 bits (408), Expect = 8.300e-37
Identity = 96/142 (67.61%), Postives = 108/142 (76.06%), Query Frame = 1


		  
Query: 1   MGRGRGKGKKLTVTSHDDPGSGEEEKIPAQKRRGRPQKPLKDNEIDEEELLKIEEEDSEN 60
           MGRGRGKGK+LTVT+HDDPGSGEEEKIPAQKRRGRPQKPLKD EID+EE+ KIEE+DSEN
Sbjct: 1   MGRGRGKGKRLTVTNHDDPGSGEEEKIPAQKRRGRPQKPLKD-EIDDEEVEKIEEDDSEN 60

Query: 61  T----------TTTAIDNGKKRKRSSPSKEKSSSVKEDNNNNNNVVGATLVSDLSNKPTG 120
                      + +A +NGKKRKR S +KEKS SVKE+N N     G    +D S K  G
Sbjct: 61  AKAGIPTKEAKSPSAAENGKKRKRYSQAKEKSDSVKEENGN-----GTRSSTDESTKSNG 120

Query: 121 FRHIGSRRKNKPRRAAEVGVEC 133
           FRH GSRRK+KPRRAAE GVEC
Sbjct: 121 FRHNGSRRKSKPRRAAEAGVEC 136

[Close]

BLAST of Spo15749.1 vs. NCBI nr
Match: gi|764566031|ref|XP_011461903.1| (PREDICTED: uncharacterized protein LOC101306506 [Fragaria vesca subsp. vesca])

HSP 1 Score: 159.5 bits (402), Expect = 4.100e-36
Identity = 95/142 (66.90%), Postives = 105/142 (73.94%), Query Frame = 1


		  
Query: 1   MGRGRGKGKKLTVTSHDDPGSGEEEKIPAQKRRGRPQKPLKDNEIDEEELLKIEEEDSEN 60
           MGRGRGKGK+LTVT+HDDPGSGEEEKIPAQKRRGRP KPLKD EIDEEE+ K+E +D EN
Sbjct: 1   MGRGRGKGKRLTVTNHDDPGSGEEEKIPAQKRRGRPLKPLKD-EIDEEEVEKVESDDIEN 60

Query: 61  TTT----------TAIDNGKKRKRSSPSKEKSSSVKEDNNNNNNVVGATLVSDLSNKPTG 120
                        TA +NGKKRKR+S +KEKS SVKE+N N     G    +D S K  G
Sbjct: 61  AKAGITSKEIKIPTAAENGKKRKRNSQAKEKSDSVKEENGN-----GTRSSTDDSTKSNG 120

Query: 121 FRHIGSRRKNKPRRAAEVGVEC 133
           FRH GSRRKNKPRRAAE GVEC
Sbjct: 121 FRHNGSRRKNKPRRAAEAGVEC 136

[Close]

BLAST of Spo15749.1 vs. NCBI nr
Match: gi|694376649|ref|XP_009364718.1| (PREDICTED: uncharacterized protein LOC103954606 [Pyrus x bretschneideri])

HSP 1 Score: 157.5 bits (397), Expect = 1.600e-35
Identity = 95/142 (66.90%), Postives = 104/142 (73.24%), Query Frame = 1


		  
Query: 1   MGRGRGKGKKLTVTSHDDPGSGEEEKIPAQKRRGRPQKPLKDNEIDEEELLKIEEEDSEN 60
           MGRGRGKGK+LTV +HDDPGSGEEEKIPAQKRRGRPQKPLKD EIDEEE  +IE +DSEN
Sbjct: 1   MGRGRGKGKRLTVNNHDDPGSGEEEKIPAQKRRGRPQKPLKD-EIDEEEAERIEADDSEN 60

Query: 61  ----------TTTTAIDNGKKRKRSSPSKEKSSSVKEDNNNNNNVVGATLVSDLSNKPTG 120
                      + +A +NGKKRKR S  KEKS SVKE+N N     G    +D S K  G
Sbjct: 61  GKAGISSKEVKSPSAAENGKKRKRQSQVKEKSDSVKEENGN-----GTRSSTDDSTKSNG 120

Query: 121 FRHIGSRRKNKPRRAAEVGVEC 133
           FRH GSRRKNKPRRAAE GVEC
Sbjct: 121 FRHNGSRRKNKPRRAAEAGVEC 136

[Close]

BLAST of Spo15749.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R9N9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_095850 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 3.600e-63
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1


		  
Query: 1   MGRGRGKGKKLTVTSHDDPGSGEEEKIPAQKRRGRPQKPLKDNEIDEEELLKIEEEDSEN 60
           MGRGRGKGKKLTVTSHDDPGSGEEEKIPAQKRRGRPQKPLKDNEIDEEELLKIEEEDSEN
Sbjct: 1   MGRGRGKGKKLTVTSHDDPGSGEEEKIPAQKRRGRPQKPLKDNEIDEEELLKIEEEDSEN 60

Query: 61  TTTTAIDNGKKRKRSSPSKEKSSSVKEDNNNNNNVVGATLVSDLSNKPTGFRHIGSRRKN 120
           TTTTAIDNGKKRKRSSPSKEKSSSVKEDNNNNNNVVGATLVSDLSNKPTGFRHIGSRRKN
Sbjct: 61  TTTTAIDNGKKRKRSSPSKEKSSSVKEDNNNNNNVVGATLVSDLSNKPTGFRHIGSRRKN 120

Query: 121 KPRRAAEVGVEC 133
           KPRRAAEVGVEC
Sbjct: 121 KPRRAAEVGVEC 132

[Close]

BLAST of Spo15749.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CKY8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g071840 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 1.700e-44
Identity = 104/135 (77.04%), Postives = 116/135 (85.93%), Query Frame = 1


		  
Query: 1   MGRGRGKGKKLTVTSHDDPGSGEEEKIPAQKRRGRPQKPLKDNEIDEEELLKIEEEDSEN 60
           MGRGRGKGKKLTVTSHDDPGSGEEEKIPAQKRRGRPQKPLKD ++DEEE++K EEE+SEN
Sbjct: 1   MGRGRGKGKKLTVTSHDDPGSGEEEKIPAQKRRGRPQKPLKD-DVDEEEVVKTEEEESEN 60

Query: 61  ---TTTTAIDNGKKRKRSSPSKEKSSSVKEDNNNNNNVVGATLVSDLSNKPTGFRHIGSR 120
              +   A++NGKKRKR+SP+KEK S VKE+       VGATLVSD+S KP GFRHIGSR
Sbjct: 61  KDSSVMVALENGKKRKRNSPTKEKQSPVKEE-----ITVGATLVSDISTKPNGFRHIGSR 120

Query: 121 RKNKPRRAAEVGVEC 133
           RKNKPRRAAEVGVEC
Sbjct: 121 RKNKPRRAAEVGVEC 129

[Close]

BLAST of Spo15749.1 vs. UniProtKB/TrEMBL
Match: W9QYA2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018387 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 5.800e-37
Identity = 96/142 (67.61%), Postives = 108/142 (76.06%), Query Frame = 1


		  
Query: 1   MGRGRGKGKKLTVTSHDDPGSGEEEKIPAQKRRGRPQKPLKDNEIDEEELLKIEEEDSEN 60
           MGRGRGKGK+LTVT+HDDPGSGEEEKIPAQKRRGRPQKPLKD EID+EE+ KIEE+DSEN
Sbjct: 1   MGRGRGKGKRLTVTNHDDPGSGEEEKIPAQKRRGRPQKPLKD-EIDDEEVEKIEEDDSEN 60

Query: 61  T----------TTTAIDNGKKRKRSSPSKEKSSSVKEDNNNNNNVVGATLVSDLSNKPTG 120
                      + +A +NGKKRKR S +KEKS SVKE+N N     G    +D S K  G
Sbjct: 61  AKAGIPTKEAKSPSAAENGKKRKRYSQAKEKSDSVKEENGN-----GTRSSTDESTKSNG 120

Query: 121 FRHIGSRRKNKPRRAAEVGVEC 133
           FRH GSRRK+KPRRAAE GVEC
Sbjct: 121 FRHNGSRRKSKPRRAAEAGVEC 136

[Close]

BLAST of Spo15749.1 vs. UniProtKB/TrEMBL
Match: M5WDG9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013160mg PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.100e-35
Identity = 95/142 (66.90%), Postives = 104/142 (73.24%), Query Frame = 1


		  
Query: 1   MGRGRGKGKKLTVTSHDDPGSGEEEKIPAQKRRGRPQKPLKDNEIDEEELLKIEEEDSEN 60
           MGRGRGKGK+LTVT+HDDPGSGEEEKIPAQKRRGRPQKPLKD EIDEEE  KIE +DSEN
Sbjct: 1   MGRGRGKGKRLTVTNHDDPGSGEEEKIPAQKRRGRPQKPLKD-EIDEEETDKIEADDSEN 60

Query: 61  ----------TTTTAIDNGKKRKRSSPSKEKSSSVKEDNNNNNNVVGATLVSDLSNKPTG 120
                      + +  +NGKKRKR S  KEKS SVKE+N      +G    +D S K  G
Sbjct: 61  GKAGIASKEIKSPSVAENGKKRKRYSQVKEKSDSVKEENG-----IGTRSSTDDSTKSNG 120

Query: 121 FRHIGSRRKNKPRRAAEVGVEC 133
           FRH GSRRKNKPRRAAE GVEC
Sbjct: 121 FRHNGSRRKNKPRRAAEAGVEC 136

[Close]

BLAST of Spo15749.1 vs. UniProtKB/TrEMBL
Match: A0A067JMD2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22676 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 3.200e-35
Identity = 95/142 (66.90%), Postives = 104/142 (73.24%), Query Frame = 1


		  
Query: 1   MGRGRGKGKKLTVTSHDDPGSGEEEKIPAQKRRGRPQKPLKDNEIDEEELLKIEEEDSEN 60
           MGRGRGKGKKLTV++H+DPGSGEEEKIPAQKRRGRPQKPLKD +IDEEE+ KIEEED EN
Sbjct: 29  MGRGRGKGKKLTVSNHEDPGSGEEEKIPAQKRRGRPQKPLKD-DIDEEEVEKIEEEDGEN 88

Query: 61  TTT----------TAIDNGKKRKRSSPSKEKSSSVKEDNNNNNNVVGATLVSDLSNKPTG 120
             T           A +NGKKRKR S +KEK  SVKE+N      V     +D S K  G
Sbjct: 89  GKTGITSKEIKSPIAAENGKKRKRYSQAKEKPDSVKEENG-----VTTRSSTDDSTKSNG 148

Query: 121 FRHIGSRRKNKPRRAAEVGVEC 133
           FRH GSRRKNKPRRAAE GVEC
Sbjct: 149 FRHNGSRRKNKPRRAAEAGVEC 164

[Close]

BLAST of Spo15749.1 vs. TAIR (Arabidopsis)
Match: AT3G57930.1 (unknown protein)

HSP 1 Score: 107.8 bits (268), Expect = 5.000e-24
Identity = 72/141 (51.06%), Postives = 94/141 (66.67%), Query Frame = 1


		  
Query: 1   MGRGRGKGKKLTVTSHDDPGSGEEEKIPAQKRRGRPQKPLKDNEIDEEELLK--IEEEDS 60
           M RGRGKGK+   T+ +D GSGEEEKIPA ++RGRPQKP+KD E +EEEL+K   EEED 
Sbjct: 1   MRRGRGKGKRQNATAREDRGSGEEEKIPAFRKRGRPQKPVKDEEEEEEELVKKTDEEEDK 60

Query: 61  ENTTTTAI-------DNGKKRKRSSPSKEKSSSVKEDNNNNNNVVGATLVSDLSNKPTGF 120
           ++ T  ++       +NG+KRK+  P + K S++ E+ N   +   +T  S  S+   GF
Sbjct: 61  DDDTNGSVTSKENVTENGRKRKK--PVESKESNITEEENGVGS-KSSTEDSMKSSSSIGF 120

Query: 121 RHIGSRRKNKPRRAAEVGVEC 133
           R  GSRRKNKPRRAAE  VEC
Sbjct: 121 RQNGSRRKNKPRRAAEAVVEC 138

[Close]

BLAST of Spo15749.1 vs. TAIR (Arabidopsis)
Match: AT2G42190.1 (unknown protein)

HSP 1 Score: 91.7 bits (226), Expect = 3.700e-19
Identity = 63/142 (44.37%), Postives = 88/142 (61.97%), Query Frame = 1


		  
Query: 1   MGRGRGKGKKLTVTSHDDPGSGEEEKIPAQKRRGRPQKPLKDN-----EIDEEEL---LK 60
           M RGRGKGKK   ++ +D GSG+EEKIPA +RRGRPQKP+KD+     E D+EE+   ++
Sbjct: 1   MRRGRGKGKKQNASAREDRGSGDEEKIPAYRRRGRPQKPMKDDFEEEEEEDDEEMVEKME 60

Query: 61  IEEEDSENTTTTAIDNGKKRKRSSPSKEKSSSVKEDNNNNNNVVGATLVSDLSNKPT--G 120
           +E+ED E    +      K ++   S   ++ + E+ N     +G+   +D S + T  G
Sbjct: 61  VEDEDEEIDDGSVTSKDLKERKRKMSNGSNTDLTEEENG----LGSKPNTDDSTRSTSIG 120

Query: 121 FRHIGSRRKNKPRRAAEVGVEC 133
           FR  GSRRK+KPRRAAE  VEC
Sbjct: 121 FRQNGSRRKSKPRRAAEAVVEC 138

The following BLAST results are available for this feature:

BLAST of Spo15749.1 vs. NCBI nr
BLAST of Spo15749.1 vs. UniProtKB/TrEMBL
BLAST of Spo15749.1 vs. ExPASy Swiss-Prot
BLAST of Spo15749.1 vs. TAIR (Arabidopsis)

BLAST of Spo15749.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902207436\|gb\|KNA15704.1\|	5.2e-63	100.	hypothetical protein SOVF_0958...	[more]
gi\|731325511\|ref\|XP_010673554.1\|	2.4e-44	77.0	PREDICTED: nucleolar and coile...	[more]
gi\|703065085\|ref\|XP_010087361.1\|	8.3e-37	67.6	hypothetical protein L484_0183...	[more]
gi\|764566031\|ref\|XP_011461903.1\|	4.1e-36	66.9	PREDICTED: uncharacterized pro...	[more]
gi\|694376649\|ref\|XP_009364718.1\|	1.6e-35	66.9	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo15749.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9R9N9_SPIOL	3.6e-63	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8CKY8_BETVU	1.7e-44	77.0	Uncharacterized protein OS=Bet...	[more]
W9QYA2_9ROSA	5.8e-37	67.6	Uncharacterized protein OS=Mor...	[more]
M5WDG9_PRUPE	1.1e-35	66.9	Uncharacterized protein OS=Pru...	[more]
A0A067JMD2_JATCU	3.2e-35	66.9	Uncharacterized protein OS=Jat...	[more]

BLAST of Spo15749.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo15749.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2


Match Name	E-value	Identity	Description
AT3G57930.1	5.0e-24	51.0	unknown protein	[more]
AT2G42190.1	3.7e-19	44.3	unknown protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34055	FAMILY NOT NAMED	coord: 1..132 score: 3.8

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005516	calmodulin binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo10568	0.70	Barchart \| Table
Spo00190	0.68	Barchart \| Table
Spo24841	0.67	Barchart \| Table
Spo16584	0.67	Barchart \| Table
Spo17630	0.67	Barchart \| Table
Spo01482	0.66	Barchart \| Table
Spo20914	0.66	Barchart \| Table
Spo05269	0.65	Barchart \| Table