Spo15794 (gene)

Overview
NameSpo15794
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr2 : 28207352 .. 28207582 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAGTTCCTGGCTGCAAGTAATCTATGATTTTTGGATTTATTTAGGGGTCCCCTTCCTGCCAAGAACATTATTGGCAGATCACTCTTCAAGTATTGGCCTCCTAACAGAATTGGGAGTACAGTTCTACCAGAGGGTTGTGCTATTGAAAAACAAGAAAGCCCTTCGACATCATCATGAGGTAGCCAAAATTGTTCTGAAGGGTGCAGCAACTCCATTTTGCTATTAG

mRNA sequence

ATGAGAAGTTCCTGGCTGCAAGTAATCTATGATTTTTGGATTTATTTAGGGGTCCCCTTCCTGCCAAGAACATTATTGGCAGATCACTCTTCAAGTATTGGCCTCCTAACAGAATTGGGAGTACAGTTCTACCAGAGGGTTGTGCTATTGAAAAACAAGAAAGCCCTTCGACATCATCATGAGGTAGCCAAAATTGTTCTGAAGGGTGCAGCAACTCCATTTTGCTATTAG

Coding sequence (CDS)

ATGAGAAGTTCCTGGCTGCAAGTAATCTATGATTTTTGGATTTATTTAGGGGTCCCCTTCCTGCCAAGAACATTATTGGCAGATCACTCTTCAAGTATTGGCCTCCTAACAGAATTGGGAGTACAGTTCTACCAGAGGGTTGTGCTATTGAAAAACAAGAAAGCCCTTCGACATCATCATGAGGTAGCCAAAATTGTTCTGAAGGGTGCAGCAACTCCATTTTGCTATTAG

Protein sequence

MRSSWLQVIYDFWIYLGVPFLPRTLLADHSSSIGLLTELGVQFYQRVVLLKNKKALRHHHEVAKIVLKGAATPFCY
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo15794.1Spo15794.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo15794.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo15794.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo15794.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo15794.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0007017 microtubule-based process
biological_process GO:0009902 chloroplast relocation
biological_process GO:0010020 chloroplast fission
biological_process GO:0007049 cell cycle
biological_process GO:0019852 L-ascorbic acid metabolic process
biological_process GO:0042744 hydrogen peroxide catabolic process
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0055122 response to very low light intensity stimulus
biological_process GO:0031118 rRNA pseudouridine synthesis
biological_process GO:0009909 regulation of flower development
biological_process GO:0009165 nucleotide biosynthetic process
biological_process GO:0034968 histone lysine methylation
biological_process GO:0006177 GMP biosynthetic process
biological_process GO:0009637 response to blue light
biological_process GO:0006541 glutamine metabolic process
biological_process GO:0006536 glutamate metabolic process
biological_process GO:0006529 asparagine biosynthetic process
biological_process GO:0006522 alanine metabolic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0009089 lysine biosynthetic process via diaminopimelate
biological_process GO:0019877 diaminopimelate biosynthetic process
biological_process GO:0009658 chloroplast organization
biological_process GO:0034484 raffinose catabolic process
biological_process GO:0006364 rRNA processing
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0009099 valine biosynthetic process
biological_process GO:0006090 pyruvate metabolic process
biological_process GO:0051258 protein polymerization
biological_process GO:0001731 formation of translation preinitiation complex
biological_process GO:0009097 isoleucine biosynthetic process
biological_process GO:0009814 defense response, incompatible interaction
biological_process GO:0006560 proline metabolic process
biological_process GO:0043419 urea catabolic process
biological_process GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic
biological_process GO:0042991 obsolete transcription factor import into nucleus
biological_process GO:0006397 mRNA processing
biological_process GO:0006402 mRNA catabolic process
biological_process GO:0000963 mitochondrial RNA processing
biological_process GO:0000957 mitochondrial RNA catabolic process
biological_process GO:0009697 salicylic acid biosynthetic process
biological_process GO:0009737 response to abscisic acid
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:0042742 defense response to bacterium
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0006468 protein phosphorylation
biological_process GO:0009553 embryo sac development
biological_process GO:0010498 proteasomal protein catabolic process
biological_process GO:0051567 histone H3-K9 methylation
biological_process GO:0006094 gluconeogenesis
biological_process GO:0044205 'de novo' UMP biosynthetic process
biological_process GO:0007010 cytoskeleton organization
biological_process GO:0006342 chromatin silencing
biological_process GO:0006526 arginine biosynthetic process
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006265 DNA topological change
biological_process GO:0009098 leucine biosynthetic process
biological_process GO:0006531 aspartate metabolic process
biological_process GO:0009409 response to cold
biological_process GO:0006457 protein folding
biological_process GO:0016579 protein deubiquitination
biological_process GO:0000338 protein deneddylation
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0009640 photomorphogenesis
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process GO:0016571 histone methylation
biological_process GO:0055085 transmembrane transport
biological_process GO:0006606 protein import into nucleus
biological_process GO:0006334 nucleosome assembly
biological_process GO:0006164 purine nucleotide biosynthetic process
biological_process GO:0009987 cellular process
biological_process GO:0009628 response to abiotic stimulus
biological_process GO:0000373 Group II intron splicing
biological_process GO:0006950 response to stress
biological_process GO:0000478 endonucleolytic cleavage involved in rRNA processing
biological_process GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process GO:0001510 RNA methylation
biological_process GO:0006626 protein targeting to mitochondrion
biological_process GO:0016567 protein ubiquitination
biological_process GO:0000413 protein peptidyl-prolyl isomerization
biological_process GO:0051252 regulation of RNA metabolic process
biological_process GO:0006412 translation
biological_process GO:0007264 small GTPase mediated signal transduction
biological_process GO:0009790 embryo development
biological_process GO:0051301 cell division
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0051604 protein maturation
biological_process GO:0009220 pyrimidine ribonucleotide biosynthetic process
biological_process GO:0008033 tRNA processing
cellular_component GO:0009507 chloroplast
cellular_component GO:0033290 eukaryotic 48S preinitiation complex
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0005618 cell wall
cellular_component GO:0016459 myosin complex
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0030687 preribosome, large subunit precursor
cellular_component GO:0016282 eukaryotic 43S preinitiation complex
cellular_component GO:0009506 plasmodesma
cellular_component GO:0005852 eukaryotic translation initiation factor 3 complex
cellular_component GO:0032040 small-subunit processome
cellular_component GO:0005694 chromosome
cellular_component GO:0005951 carbamoyl-phosphate synthase complex
cellular_component GO:0005654 nucleoplasm
cellular_component GO:0005730 nucleolus
cellular_component GO:0080008 Cul4-RING E3 ubiquitin ligase complex
cellular_component GO:0005874 microtubule
cellular_component GO:0032991 protein-containing complex
cellular_component GO:0005739 mitochondrion
cellular_component GO:0044444 cytoplasmic part
cellular_component GO:0009536 plastid
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0016020 membrane
cellular_component GO:0005840 ribosome
cellular_component GO:0005741 mitochondrial outer membrane
cellular_component GO:0005829 cytosol
cellular_component GO:0005732 small nucleolar ribonucleoprotein complex
cellular_component GO:0016592 mediator complex
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0010319 stromule
cellular_component GO:1990904 ribonucleoprotein complex
cellular_component GO:0022625 cytosolic large ribosomal subunit
molecular_function GO:0016905 myosin heavy chain kinase activity
molecular_function GO:0008422 beta-glucosidase activity
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity
molecular_function GO:0008266 poly(U) RNA binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0004386 helicase activity
molecular_function GO:0000175 3'-5'-exoribonuclease activity
molecular_function GO:0004088 carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
molecular_function GO:0016151 nickel cation binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004654 polyribonucleotide nucleotidyltransferase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003924 GTPase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0016462 pyrophosphatase activity
molecular_function GO:0003852 2-isopropylmalate synthase activity
molecular_function GO:0030515 snoRNA binding
molecular_function GO:0008168 methyltransferase activity
molecular_function GO:0052692 raffinose alpha-galactosidase activity
molecular_function GO:0016757 transferase activity, transferring glycosyl groups
molecular_function GO:0000774 adenyl-nucleotide exchange factor activity
molecular_function GO:0051087 chaperone binding
molecular_function GO:0042803 protein homodimerization activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase
molecular_function GO:0070402 NADPH binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity
molecular_function GO:0003922 GMP synthase (glutamine-hydrolyzing) activity
molecular_function GO:0016740 transferase activity
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0003755 peptidyl-prolyl cis-trans isomerase activity
molecular_function GO:0042393 histone binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0050660 flavin adenine dinucleotide binding
molecular_function GO:0016656 monodehydroascorbate reductase (NADH) activity
molecular_function GO:0003690 double-stranded DNA binding
molecular_function GO:0008026 ATP-dependent helicase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0042802 identical protein binding
molecular_function GO:0043621 protein self-association
molecular_function GO:0043021 ribonucleoprotein complex binding
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity
molecular_function GO:0004055 argininosuccinate synthase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo160970.77Barchart | Table
Spo149840.75Barchart | Table
Spo266360.74Barchart | Table
Spo107050.72Barchart | Table
Spo195000.72Barchart | Table
Spo103220.72Barchart | Table
Spo022280.71Barchart | Table
Spo183040.70Barchart | Table
Spo048510.70Barchart | Table
Spo001700.70Barchart | Table
Spo244750.70Barchart | Table
Spo031050.70Barchart | Table
Spo044530.70Barchart | Table
Spo268510.69Barchart | Table
Spo137070.69Barchart | Table
Spo106240.69Barchart | Table
Spo020320.69Barchart | Table
Spo061680.69Barchart | Table
Spo007800.69Barchart | Table
Spo051900.69Barchart | Table
Spo173050.69Barchart | Table
Spo268570.68Barchart | Table
Spo019700.68Barchart | Table
Spo027060.68Barchart | Table
Spo044540.68Barchart | Table
Spo045310.68Barchart | Table
Spo074020.68Barchart | Table
Spo093230.68Barchart | Table
Spo093530.68Barchart | Table
Spo120710.68Barchart | Table
Spo145220.68Barchart | Table
Spo166270.68Barchart | Table
Spo168740.68Barchart | Table
Spo179290.68Barchart | Table
Spo193250.68Barchart | Table
Spo223260.68Barchart | Table
Spo227400.68Barchart | Table
Spo233450.68Barchart | Table
Spo264520.68Barchart | Table
Spo256710.67Barchart | Table
Spo141590.67Barchart | Table
Spo259540.67Barchart | Table
Spo181580.67Barchart | Table
Spo038820.67Barchart | Table
Spo184340.67Barchart | Table
Spo244140.67Barchart | Table
Spo194010.67Barchart | Table
Spo021890.67Barchart | Table
Spo074320.67Barchart | Table
Spo055690.67Barchart | Table
Spo079280.67Barchart | Table
Spo256720.67Barchart | Table
Spo153630.66Barchart | Table
Spo121430.66Barchart | Table
Spo064870.66Barchart | Table
Spo137310.66Barchart | Table
Spo143530.66Barchart | Table
Spo059690.66Barchart | Table
Spo256150.66Barchart | Table
Spo258860.66Barchart | Table
Spo055470.66Barchart | Table
Spo261960.66Barchart | Table
Spo197760.66Barchart | Table
Spo201610.66Barchart | Table
Spo222840.66Barchart | Table
Spo226610.66Barchart | Table
Spo010960.66Barchart | Table
Spo007020.66Barchart | Table
Spo242700.66Barchart | Table
Spo087650.66Barchart | Table
Spo089980.66Barchart | Table
Spo021810.66Barchart | Table
Spo095630.66Barchart | Table
Spo068810.65Barchart | Table
Spo005680.65Barchart | Table
Spo151340.65Barchart | Table
Spo107980.65Barchart | Table
Spo117560.65Barchart | Table
Spo077940.65Barchart | Table
Spo201840.65Barchart | Table
Spo080900.65Barchart | Table
Spo128090.65Barchart | Table