Spo15855 (gene)

Overview
NameSpo15855
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_01584 : 83800 .. 84585 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTCTCGAAATCCTATAAATACATGGGCTTGGTTCTTAACTTGTTATCCCAATTCAAAACACAAATGGCAACTTCAAAGGCTTTTGTTCTTGTCATCCTTTTTGCTGCAACTCTTCTCATTTCCTCTGACAACGTCTCAGCTCGTGAACTTGTTCACCCTAACTCCACTCCACAGACACGTTAGTATCTTAACATTTGCGTATACAAAAAATATTTAATTTCGTCGTAATGCCATTAATTTGTTAATTGTTATTACTATCTAATTACATTGTTGTTGCCTACTGATTTTATTTATAATTTCTACAGATGCTTCTACAGCTGGATATGATGGTTCTTCACCTCACCATTCCTACGACGATGATCCAACCCAGGAACCGATTTTCCCCCCTCCCACGCATAAGAAGAAGAAAACGCATGGATGAAAACTTCAACTAATTAAGTATCCGATCGACCAAAGTGCTGTGTAACCATCTATTTTCCTTCAAATCTGTTTGTGTTTTTATGAAATAAAACTATTGTCACAATTCGTCGATAGCTTTCTCATAAATGTGTATTTGCTTCTTAAACTTTTATGTACTTGTAATTTGTAACTTGTAACCCGTGTGAGTGAAATTTTCCAACAAGTTAAATTTCTTCTACTTCGTATAATATGTTTTATTGATTTTGATTCGCAATTTAGAAGGTGGACCATGGTGCACAATGAGTATGATGCACCTTAAGAACACTAATATATAATTAAAAGAACATTTGGTTACGTA

mRNA sequence

AAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTCTCGAAATCCTATAAATACATGGGCTTGGTTCTTAACTTGTTATCCCAATTCAAAACACAAATGGCAACTTCAAAGGCTTTTGTTCTTGTCATCCTTTTTGCTGCAACTCTTCTCATTTCCTCTGACAACGTCTCAGCTCGTGAACTTGTTCACCCTAACTCCACTCCACAGACACATGCTTCTACAGCTGGATATGATGGTTCTTCACCTCACCATTCCTACGACGATGATCCAACCCAGGAACCGATTTTCCCCCCTCCCACGCATAAGAAGAAGAAAACGCATGGATGAAAACTTCAACTAATTAAGTATCCGATCGACCAAAGTGCTGTGTAACCATCTATTTTCCTTCAAATCTGTTTGTGTTTTTATGAAATAAAACTATTGTCACAATTCGTCGATAGCTTTCTCATAAATGTGTATTTGCTTCTTAAACTTTTATGTACTTGTAATTTGTAACTTGTAACCCGTGTGAGTGAAATTTTCCAACAAGTTAAATTTCTTCTACTTCGTATAATATGTTTTATTGATTTTGATTCGCAATTTAGAAGGTGGACCATGGTGCACAATGAGTATGATGCACCTTAAGAACACTAATATATAATTAAAAGAACATTTGGTTACGTA

Coding sequence (CDS)

ATGGGCTTGGTTCTTAACTTGTTATCCCAATTCAAAACACAAATGGCAACTTCAAAGGCTTTTGTTCTTGTCATCCTTTTTGCTGCAACTCTTCTCATTTCCTCTGACAACGTCTCAGCTCGTGAACTTGTTCACCCTAACTCCACTCCACAGACACATGCTTCTACAGCTGGATATGATGGTTCTTCACCTCACCATTCCTACGACGATGATCCAACCCAGGAACCGATTTTCCCCCCTCCCACGCATAAGAAGAAGAAAACGCATGGATGA

Protein sequence

MGLVLNLLSQFKTQMATSKAFVLVILFAATLLISSDNVSARELVHPNSTPQTHASTAGYDGSSPHHSYDDDPTQEPIFPPPTHKKKKTHG
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo15855.1Spo15855.1mRNA


Homology
[Close]
BLAST of Spo15855.1 vs. NCBI nr
Match: gi|902146648|gb|KNA05087.1| (hypothetical protein SOVF_193630 [Spinacia oleracea])

HSP 1 Score: 151.0 bits (380), Expect = 1.000e-33
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1 

		  

Query: 15 MATSKAFVLVILFAATLLISSDNVSARELVHPNSTPQTHASTAGYDGSSPHHSYDDDPTQ 74
          MATSKAFVLVILFAATLLISSDNVSARELVHPNSTPQTHASTAGYDGSSPHHSYDDDPTQ
Sbjct: 1  MATSKAFVLVILFAATLLISSDNVSARELVHPNSTPQTHASTAGYDGSSPHHSYDDDPTQ 60

Query: 75 EPIFPPPTHKKKKTHG 91
          EPIFPPPTHKKKKTHG
Sbjct: 61 EPIFPPPTHKKKKTHG 76
[Close]
BLAST of Spo15855.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QCU2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_193630 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 7.000e-34
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1 

		  

Query: 15 MATSKAFVLVILFAATLLISSDNVSARELVHPNSTPQTHASTAGYDGSSPHHSYDDDPTQ 74
          MATSKAFVLVILFAATLLISSDNVSARELVHPNSTPQTHASTAGYDGSSPHHSYDDDPTQ
Sbjct: 1  MATSKAFVLVILFAATLLISSDNVSARELVHPNSTPQTHASTAGYDGSSPHHSYDDDPTQ 60

Query: 75 EPIFPPPTHKKKKTHG 91
          EPIFPPPTHKKKKTHG
Sbjct: 61 EPIFPPPTHKKKKTHG 76
The following BLAST results are available for this feature:
BLAST of Spo15855.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902146648|gb|KNA05087.1|1.0e-33100.hypothetical protein SOVF_1936... [more]
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BLAST of Spo15855.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9QCU2_SPIOL7.0e-34100.Uncharacterized protein OS=Spi... [more]
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BLAST of Spo15855.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo15855.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006629 lipid metabolic process
biological_process GO:0009267 cellular response to starvation
biological_process GO:0042742 defense response to bacterium
biological_process GO:0012501 programmed cell death
biological_process GO:0006468 protein phosphorylation
biological_process GO:0009751 response to salicylic acid
biological_process GO:0000041 transition metal ion transport
biological_process GO:0045491 xylan metabolic process
molecular_function GO:0016788 hydrolase activity, acting on ester bonds
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo088040.72Barchart | Table
Spo158500.72Barchart | Table
Spo035690.71Barchart | Table