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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. ACATGTGAATGATTTTATTGGTTGATGTCACGTGTGACAAGAAATCAAGAACAAAATACTACAGTACATAAAACAAGATCATATATAGCTTAATAGCTCAACCAACAAACATAAACCAATCACCAAAACTCAAAGAAGAGATAGAGAAAGAGAAAGAGAAAGAGAGTAAAAATGTACTCAGATCAACCACCTCTAGTTCAAGAAATAACATACTATGATCATGTTAAGAGACGCCACCACGAGAAAGGATGCATCTATGCAGCGTTCGTTTTCTTTAAACTCTAAAACTTGTTGTTAATACTTAATAGTGTGACTTATACTAAGATTATTGATTTTAACAAGTAGTACTAAATCTGGTTTAAGTAAGCCTGTTTTTTCTGGTATGTTGAATGCAGTTGTTTCGCGTTATGCTGCTGCTTTTGCTGCTATGAAACCTGTGAATGCTGCTTCGATATCCTCTGCTGTTGCTGTTAAGCAGAAGCATTCATTTCAGAAACAAACCGTGTCTGTACTACTGTATAGTACTACTTTGAGAATGGAATTTGTAATGGATTAAGATGGGTTTGTATCTTTGATTTTGTAAAGTTCTGTCTTGTTTCAATAAGAACATCATGTTTGTAATTTGTAAAGTGCTGTCTTATTAACTTCATCTATGTAATTGTTTGGTGTTCCAAAATATTCAACAACTATTGCTACATACTTGTATCAACTACTTGTATTTCTAACAGACAACTTCAATCTTCAGAGTTCAGACTAAACAGAGAAATGTACATGTGAACTCATTTCAAAACGCCAAAAAAGAGAAGAGATTAAACTAGAATGTCAGGATTTCTTCCTTTGGGGTGTGTAGTCAGATCAGCTCAGCATTTAGAAGAGTAAATCTTAAGACTGTAATATCTTCAACATTTAGAATCAAAGGAGTCTCAGAATATGTACACACAGGCAACAGAAGTCAGCAGGGTGGTGAGCAGTATCGAGACAAAATTGACACCATTGTTGTCGAGGATATCAACACCACAGATACGCTTAACAGTGCGTCCAGGTTTCCCAACAACCTTCAATTGGCAATTTAAAACTGATAAGTAAATATTAACAGTATCATCAATTCATCATGCAAGTTGGCAAATGCAGAAAGAGAAACTCTGAAATTGCGGCAAGAGTGACAACATAAGAAAGATTTTAGTTACTCTGTATCATACAAAGACATGTTCAAAATCTTTCCTAGTTTCATGTAATATTACAAACTGAAGCAGATGTGTAAAATCTTTCACAAAAAGCCTTTAGCGATGGTTCCCAGGCATGGAATTAAAATAGAGAAAAAAATAGCATAAAGAGCACAAATTCCAAGACTTTATATAATCAGGTTTATGCGAGCATACACATAAGCATCACAATTTGAAGTCAGCAATATATCAGAATGCAGAACCTATGGAGCAAGGAAGAAGGTTTGCAGGCCAC mRNA sequence ACATGTGAATGATTTTATTGGTTGATGTCACGTGTGACAAGAAATCAAGAACAAAATACTACAGTACATAAAACAAGATCATATATAGCTTAATAGCTCAACCAACAAACATAAACCAATCACCAAAACTCAAAGAAGAGATAGAGAAAGAGAAAGAGAAAGAGAGTAAAAATGTACTCAGATCAACCACCTCTAGTTCAAGAAATAACATACTATGATCATGTTAAGAGACGCCACCACGAGAAAGGATGCATCTATGCAGCTTGTTTCGCGTTATGCTGCTGCTTTTGCTGCTATGAAACCTGTGAATGCTGCTTCGATATCCTCTGCTGTTGCTGTTAAGCAGAAGCATTCATTTCAGAAACAAACCGTGTCTGTACTACTGTATAGTACTACTTTGAGAATGGAATTTGTAATGGATTAAGATGGGTTTGTATCTTTGATTTTGTAAAGTTCTGTCTTGTTTCAATAAGAACATCATGTTTGTAATTTGTAAAGTGCTGTCTTATTAACTTCATCTATGTAATTGTTTGGTGTTCCAAAATATTCAACAACTATTGCTACATACTTGTATCAACTACTTGTATTTCTAACAGACAACTTCAATCTTCAGAGTTCAGACTAAACAGAGAAATGTACATGTGAACTCATTTCAAAACGCCAAAAAAGAGAAGAGATTAAACTAGAATGTCAGGATTTCTTCCTTTGGGGTGTGTAGTCAGATCAGCTCAGCATTTAGAAGAGTAAATCTTAAGACTGTAATATCTTCAACATTTAGAATCAAAGGAGTCTCAGAATATGTACACACAGGCAACAGAAGTCAGCAGGGTGGTGAGCAGTATCGAGACAAAATTGACACCATTGTTGTCGAGGATATCAACACCACAGATACGCTTAACAGTGCGTCCAGGTTTCCCAACAACCTTCAATTGGCAATTTAAAACTGATAAGTAAATATTAACAGTATCATCAATTCATCATGCAAGTTGGCAAATGCAGAAAGAGAAACTCTGAAATTGCGGCAAGAGTGACAACATAAGAAAGATTTTAGTTACTCTGTATCATACAAAGACATGTTCAAAATCTTTCCTAGTTTCATGTAATATTACAAACTGAAGCAGATGTGTAAAATCTTTCACAAAAAGCCTTTAGCGATGGTTCCCAGGCATGGAATTAAAATAGAGAAAAAAATAGCATAAAGAGCACAAATTCCAAGACTTTATATAATCAGGTTTATGCGAGCATACACATAAGCATCACAATTTGAAGTCAGCAATATATCAGAATGCAGAACCTATGGAGCAAGGAAGAAGGTTTGCAGGCCAC Coding sequence (CDS) ATGATCATGTTAAGAGACGCCACCACGAGAAAGGATGCATCTATGCAGCTTGTTTCGCGTTATGCTGCTGCTTTTGCTGCTATGAAACCTGTGAATGCTGCTTCGATATCCTCTGCTGTTGCTGTTAAGCAGAAGCATTCATTTCAGAAACAAACCGTGTCTGTACTACTGTATAGTACTACTTTGAGAATGGAATTTGTAATGGATTAA Protein sequence MIMLRDATTRKDASMQLVSRYAAAFAAMKPVNAASISSAVAVKQKHSFQKQTVSVLLYSTTLRMEFVMD
Relationships
The following mRNA feature(s) are a part of this gene:
| Feature Name | Unique Name | Type |
|---|
| Spo15890.1 | Spo15890.1 | mRNA |
Homology
BLAST of Spo15890.1 vs. NCBI nr
Match: gi|902185886|gb|KNA10572.1| (hypothetical protein SOVF_143140 [Spinacia oleracea]) HSP 1 Score: 120.9 bits (302), Expect = 8.500e-25 Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1
Query: 3 MLRDATTRKDASMQLVSRYAAAFAAMKPVNAASISSAVAVKQKHSFQKQTVSVLLYSTTL 62
MLRDATTRKDASMQLVSRYAAAFAAMKPVNAASISSAVAVKQKHSFQKQTVSVLLYSTTL
Sbjct: 1 MLRDATTRKDASMQLVSRYAAAFAAMKPVNAASISSAVAVKQKHSFQKQTVSVLLYSTTL 60
Query: 63 RMEFVMD 70
RMEFVMD
Sbjct: 61 RMEFVMD 67
BLAST of Spo15890.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QTF9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_143140 PE=4 SV=1) HSP 1 Score: 120.9 bits (302), Expect = 5.900e-25 Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1
Query: 3 MLRDATTRKDASMQLVSRYAAAFAAMKPVNAASISSAVAVKQKHSFQKQTVSVLLYSTTL 62
MLRDATTRKDASMQLVSRYAAAFAAMKPVNAASISSAVAVKQKHSFQKQTVSVLLYSTTL
Sbjct: 1 MLRDATTRKDASMQLVSRYAAAFAAMKPVNAASISSAVAVKQKHSFQKQTVSVLLYSTTL 60
Query: 63 RMEFVMD 70
RMEFVMD
Sbjct: 61 RMEFVMD 67
The following BLAST results are available for this feature:
BLAST of Spo15890.1 vs. NCBI nr
Analysis Date: 2018-06-29 ( blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
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BLAST of Spo15890.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 ( blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
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BLAST of Spo15890.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 ( blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
| Match Name | E-value | Identity | Description | |
|---|
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BLAST of Spo15890.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 ( blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
| Match Name | E-value | Identity | Description | |
|---|
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0030001 |
metal ion transport |
| biological_process |
GO:0006448 |
regulation of translational elongation |
| biological_process |
GO:0035265 |
organ growth |
| biological_process |
GO:0032984 |
protein-containing complex disassembly |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| biological_process |
GO:0018874 |
benzoate metabolic process |
| biological_process |
GO:0006094 |
gluconeogenesis |
| biological_process |
GO:0006096 |
glycolytic process |
| biological_process |
GO:0042254 |
ribosome biogenesis |
| biological_process |
GO:0006412 |
translation |
| cellular_component |
GO:0005634 |
nucleus |
| cellular_component |
GO:0005840 |
ribosome |
| cellular_component |
GO:0005739 |
mitochondrion |
| cellular_component |
GO:0009507 |
chloroplast |
| molecular_function |
GO:0003735 |
structural constituent of ribosome |
| molecular_function |
GO:0003690 |
double-stranded DNA binding |
| molecular_function |
GO:0005525 |
GTP binding |
| molecular_function |
GO:0003998 |
acylphosphatase activity |
| molecular_function |
GO:0003746 |
translation elongation factor activity |
| molecular_function |
GO:0046872 |
metal ion binding |
| molecular_function |
GO:0005515 |
protein binding |
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