Spo15908 (gene)

Overview
NameSpo15908
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionWerner syndrome-like exonuclease
LocationSpoScf_01933 : 61974 .. 65537 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTTTCCATTTGTTGGAAAAATCTGTGATTCTCAATGGGAATATGTTCTTCCCTAACGTCAGAGGCATGAGTGCTTGTAAGACTGAGGAATACCAACTGGATTTTACTTCAATTCCATCCCTGCGGATTTCCATTTTGTGATTGCATTGTCAATTATTAATTCTAGTGGTCAAGATTTTACCACGATCTTTGAGTTGAGTTGTAGGGTTGTTATTAGAGAATGAACCAAGTGTCACTGTGTCAGTCTTTCACACCTCTTATTACTCAGAATTAATCATCACTGTAGAAGTGCAGATGCTATAAGCTATGTTGCTACTTTGTATAAACAAGTTACTTTCATATATACTTCGTGCACAAAATAAATTTTATGTGAAAGGAACAAGCTGAACAAGGGGAACTCTTGTCTGTTTTGTCACTCTACAATTACATCTATTTTATTGAAAAGTAGTCTGTTTGAATCTGATCCTTAGTTCCTAGACTTCCTACGTACTTATTTCCTTGTTCATAAGCTTTAACTCGGTTATCTATTGTATCCTTCTCATTTAGTTAAGATGAGCGAATTTTTAGAACATCCCCATGGTTTTTTTCCCTCCATATCAATGCGCTGTCTGAACTTCTTGTGTATGTCATTCGGTTTCTGAACTAGTTATGAAATTCTAGTGTGCAATTTAATGGTATCTTTAACCTCTGTTGTAATCTTTCTATTTGTTCTTTACTCGCCTACTGTTATTGAACTCCCTTTCCCTGCTTAATTTTTACTATTATCCATAAATTTCGTCAACATCTATGATGGTGTCCACCTGTCTTTGTTTCTTGAACACTTTCCTCTTTTCGTTCTTGTACGATTACTAGTTAGATGCGTTATTGTGATATAGTTCGAAGGTTTACGAGCTATCCCCAGAAATTGATGGGAATCTCTGTTCGCTGACTTTATGATTGTAGAATGTAGATGCTTAAAGTGAGTGTGTTTTTAAGCCTTCACTTCACATTCACTAAATTTGCGTTCTAGGTATTCCACAGGGAAAAGCTGCAGTCATGCAAATATGTGGGGATATGAATATTTGCTACGTATTGCACATTTTTCATTCTGGAATCCCTGGTAGCCTGCAATCTCTTCTTGAAGATTCTACATACATCAAGGTTTGTATGTTTTAAGTTACTGTGCATAAACATGAACCTCTTCTTTGATAGTGATTAACCTTGTATTGTTCACAGGTTGGAGTTGGTATTGACAATGACGCTGTTAAAGTCTTCCATGACCATAATGTGTCAATAAAATCCTTGGAAGATCTATCCAGTCTGGCCAATCAAAAGCTTGGCGGTGTACCAAAACAGTGGAGTCTGTCTTCACTGGTTGAAACTTTTATTTGCAAACAAGTACTTAACTGGTACCTCTTGCTTTTACTGGTTATTGGTTATTGCCTCCCTTGATATTCTTTTTGGTACTTTTGCTGTATAACTGTATTCAACTTTAAACGATTTTGCCTTATGTATGCTCCAGTTTCTTCTTGTTACTTTATGATCACCATAAACTTTGCTTGTCAGTTTCTTAATTCACATTTTCTGGGTTTTCTGTAATTTTCTTAAAGATAGAAGTAGTCATTAACTTGGGACATGAATGCAGCAACTTTCATGAGAAATTTCTCTTATATAGAAATCATATCCAAATTTGGGCCTGGTGCCCAGAACCTGCCAGCTGTGGGTTCTTTTCTTCACGCAGTTTTGTGATAATTTAAGTTGTACAGTATTTATTGAGTCTTCATTTCACGATTACAACAACATTCAAGGTTGGTTCATTGTCATCATTCTTGGAGAGTATTACTATAGAACTGCCGTTTAGTACAGATTCTGCTGTTAGCAGTATTTGGTGACTTGTCTCTCCCTTCTTTAGCCCTTGAATTGTGATTTTTGTGAGGCTTATCCTTTGTCACGAGTTACTTAGTAAGGGATCATTAGAAAACAAAGTTAAATGAATCAATTTTGTTGACAACCATTAGAATTAAAAGCGGCTGGTTCCACTTAATATTCTGATAGTTTGGTTAGATGAATGTGTTGCCAATCCTAATTGCTTTCAAGGCTATATGATATATCCCAGTCTGCTTAGTTTCACTATGAATCCTAGGCCATGCTGTTCCTGTGTAATTCCAAGAAATCAAATCTGAAGAGTTTAGGCTGCATCAACTTGGTTTTCCATCTGTGCTATGGCAAGTATCAAAAGATTGATTTACATATGGATAACGTCACATCTTTCTTGAAGCATTTCCAGAATTGTTTTATTGTTTGTGTTTGTATTTGTCTTCCGTCATAATTTTGTCACAACAAAAAGCTGTTGGCTCTTGACCAGCGATTTCTTCACGTGTCACTACTGTGGTTCTAACTTTTCTAAGTTATAACTATTCCCGACGTTACTCTTTTAGCTTTGTTATGTGATTTTGTGAAAGTACGGATTACCAATTACAAGTTGGTGTATGCAGCTCTTGAAGCCTAAGAAGATTAGACTAGGAAATTGGGAAGCCGATCCTCTTTCAAAGGCACAGTTACAGTACGCAGCAACTGATGCATTCGCTTCTTGGTTCCTCTATGAGGTAATGATAATCAGTGTGTTTTATCTTATTTTAGCACTTAAAAACAATCAAGTTATCATCTTACTATTCTGCATTTCCCCCACATTAGGTGCTGCAGAGTTTTCAAGAATTACCCGAGAATCAGAAGAAGAATTAAATCCTTAAAAAGCTTATGGGAATAAAACTGATTGAGCATCGATCACTATTGGAAGTTAGCAGGTTGTCCATAGGAAACTGAATCAAGATGCAACATGCCTACAAGTCTACAACCAGGTTTCACTCCACATATTTATATCATCAATATTTTTTCAAGTCCAGTTATTATTTGTTCCAAGAGGACTAGCCCCTGTAACGCTAGGAGAGGCAGGGTTGAACCCATTTTTAGGACTGTGAAGGTAGACATTAAACCTAGATGAGAATCGAAACCTCAACTTCAATGTCGGCAGGTTTGTGATTTATCACTCGATGCAACTTTCTGTACCGAACCACCATCATCAGAACCGAAACGGGTCGCCTGGATGCAACTATTTATGCCGTGTTTATCACCATTCACCGGGGACTACGTAGGGGTCTGAAAAACCATCCCATATTTATTTAATTCAATGTATGTGTTCTCTGAGTTCTGAAATTAAATGTGACCATGTTGATTCTTCTGATTATGTTCTTTATCCCCTGAATCCTGATTCCTGAGATGCTATACCATGTTATTATGATTACTATGTATGTAATCATAAGGAGCCCCATATTCATTATTTATTCCCATAACATTTCCTTTTTTTTTTATTATTATAATTTTATAATTTTAGTTCCCTGAATGTCACTCTATGTGAAAGTGATTGAAGGGTTGGCATTACTCATTTACTCACTACTGGACTGTTGGTTGGTTGCCACTTGCATATGAGAGTGGGGCCCTTGCCTCTTGTGTGATTTTAATGGTCTCTCTTTCCCTTAGATTGTGGGGTTGTATCCCATGTGATTAAGGACACCAGCTTTTTAT

mRNA sequence

ATGTGTTTCCATTTGTTGGAAAAATCTGTGATTCTCAATGGGAATATGTTCTTCCCTAACGTCAGAGGCATGAGTGCTTGTATTCCACAGGGAAAAGCTGCAGTCATGCAAATATGTGGGGATATGAATATTTGCTACGTATTGCACATTTTTCATTCTGGAATCCCTGGTAGCCTGCAATCTCTTCTTGAAGATTCTACATACATCAAGGTTGGAGTTGGTATTGACAATGACGCTGTTAAAGTCTTCCATGACCATAATGTGTCAATAAAATCCTTGGAAGATCTATCCAGTCTGGCCAATCAAAAGCTTGGCGGTGTACCAAAACAGTGGAGTCTGTCTTCACTGGTTGAAACTTTTATTTGCAAACAACTCTTGAAGCCTAAGAAGATTAGACTAGGAAATTGGGAAGCCGATCCTCTTTCAAAGGCACAGTTACAGTACGCAGCAACTGATGCATTCGCTTCTTGGTTCCTCTATGAGGTGCTGCAGAGTTTTCAAGAATTACCCGAGAATCAGAAGAAGAATTAAATCCTTAAAAAGCTTATGGGAATAAAACTGATTGAGCATCGATCACTATTGGAAGTTAGCAGGTTGTCCATAGGAAACTGAATCAAGATGCAACATGCCTACAAGTCTACAACCAGGTTTCACTCCACATATTTATATCATCAATATTTTTTCAAGTCCAGTTATTATTTGTTCCAAGAGGACTAGCCCCTGTAACGCTAGGAGAGGCAGGGTTGAACCCATTTTTAGGACTGTGAAGGTAGACATTAAACCTAGATGAGAATCGAAACCTCAACTTCAATGTCGGCAGGTTTGTGATTTATCACTCGATGCAACTTTCTGTACCGAACCACCATCATCAGAACCGAAACGGGTCGCCTGGATGCAACTATTTATGCCGTGTTTATCACCATTCACCGGGGACTACGTAGGGGTCTGAAAAACCATCCCATATTTATTTAATTCAATGTATGTGTTCTCTGAGTTCTGAAATTAAATGTGACCATGTTGATTCTTCTGATTATGTTCTTTATCCCCTGAATCCTGATTCCTGAGATGCTATACCATGTTATTATGATTACTATGTATGTAATCATAAGGAGCCCCATATTCATTATTTATTCCCATAACATTTCCTTTTTTTTTTATTATTATAATTTTATAATTTTAGTTCCCTGAATGTCACTCTATGTGAAAGTGATTGAAGGGTTGGCATTACTCATTTACTCACTACTGGACTGTTGGTTGGTTGCCACTTGCATATGAGAGTGGGGCCCTTGCCTCTTGTGTGATTTTAATGGTCTCTCTTTCCCTTAGATTGTGGGGTTGTATCCCATGTGATTAAGGACACCAGCTTTTTAT

Coding sequence (CDS)

ATGTGTTTCCATTTGTTGGAAAAATCTGTGATTCTCAATGGGAATATGTTCTTCCCTAACGTCAGAGGCATGAGTGCTTGTATTCCACAGGGAAAAGCTGCAGTCATGCAAATATGTGGGGATATGAATATTTGCTACGTATTGCACATTTTTCATTCTGGAATCCCTGGTAGCCTGCAATCTCTTCTTGAAGATTCTACATACATCAAGGTTGGAGTTGGTATTGACAATGACGCTGTTAAAGTCTTCCATGACCATAATGTGTCAATAAAATCCTTGGAAGATCTATCCAGTCTGGCCAATCAAAAGCTTGGCGGTGTACCAAAACAGTGGAGTCTGTCTTCACTGGTTGAAACTTTTATTTGCAAACAACTCTTGAAGCCTAAGAAGATTAGACTAGGAAATTGGGAAGCCGATCCTCTTTCAAAGGCACAGTTACAGTACGCAGCAACTGATGCATTCGCTTCTTGGTTCCTCTATGAGGTGCTGCAGAGTTTTCAAGAATTACCCGAGAATCAGAAGAAGAATTAA

Protein sequence

MCFHLLEKSVILNGNMFFPNVRGMSACIPQGKAAVMQICGDMNICYVLHIFHSGIPGSLQSLLEDSTYIKVGVGIDNDAVKVFHDHNVSIKSLEDLSSLANQKLGGVPKQWSLSSLVETFICKQLLKPKKIRLGNWEADPLSKAQLQYAATDAFASWFLYEVLQSFQELPENQKKN
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo15908.1Spo15908.1mRNA


Homology
[Close]
BLAST of Spo15908.1 vs. NCBI nr
Match: gi|902203888|gb|KNA14724.1| (hypothetical protein SOVF_104710 [Spinacia oleracea])

HSP 1 Score: 304.7 bits (779), Expect = 1.100e-79
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 1 

		  

Query: 28  IPQGKAAVMQICGDMNICYVLHIFHSGIPGSLQSLLEDSTYIKVGVGIDNDAVKVFHDHN 87
           IPQGKAAVMQICGDMNICYVLHIFHSGIPGSLQSLLEDSTYIKVGVGIDNDAVKVFHDHN
Sbjct: 187 IPQGKAAVMQICGDMNICYVLHIFHSGIPGSLQSLLEDSTYIKVGVGIDNDAVKVFHDHN 246

Query: 88  VSIKSLEDLSSLANQKLGGVPKQWSLSSLVETFICKQLLKPKKIRLGNWEADPLSKAQLQ 147
           VSIKSLEDLSSLANQKLGGVPKQWSLSSLVETFICKQLLKPKKIRLGNWEADPLSKAQLQ
Sbjct: 247 VSIKSLEDLSSLANQKLGGVPKQWSLSSLVETFICKQLLKPKKIRLGNWEADPLSKAQLQ 306

Query: 148 YAATDAFASWFLYEVLQSFQELPENQKKN 177
           YAATDAFASWFLYEVLQSFQELPENQKKN
Sbjct: 307 YAATDAFASWFLYEVLQSFQELPENQKKN 335
[Close]
BLAST of Spo15908.1 vs. NCBI nr
Match: gi|731325203|ref|XP_010673388.1| (PREDICTED: Werner Syndrome-like exonuclease [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 254.6 bits (649), Expect = 1.300e-64
Identity = 126/149 (84.56%), Postives = 137/149 (91.95%), Query Frame = 1 

		  

Query: 28  IPQGKAAVMQICGDMNICYVLHIFHSGIPGSLQSLLEDSTYIKVGVGIDNDAVKVFHDHN 87
           IPQGKAAVMQICGDM  CYVLHI HSGIPGSLQSLLEDS +IKVGVGIDNDAVKVFHDHN
Sbjct: 195 IPQGKAAVMQICGDMTHCYVLHIIHSGIPGSLQSLLEDSEFIKVGVGIDNDAVKVFHDHN 254

Query: 88  VSIKSLEDLSSLANQKLGGVPKQWSLSSLVETFICKQLLKPKKIRLGNWEADPLSKAQLQ 147
           VSIK++EDLS LANQKLGG+ KQWSLSSLVETF CKQLLKPKKIRLGNWEAD LSK QL+
Sbjct: 255 VSIKAVEDLSILANQKLGGL-KQWSLSSLVETFTCKQLLKPKKIRLGNWEADFLSKPQLK 314

Query: 148 YAATDAFASWFLYEVLQSFQELPENQKKN 177
           YAATDAFASW LYEVL+S+ +LP+N+ +N
Sbjct: 315 YAATDAFASWNLYEVLKSYPDLPQNKPEN 342
[Close]
BLAST of Spo15908.1 vs. NCBI nr
Match: gi|359477935|ref|XP_003632043.1| (PREDICTED: LOW QUALITY PROTEIN: Werner Syndrome-like exonuclease [Vitis vinifera])

HSP 1 Score: 218.0 bits (554), Expect = 1.300e-53
Identity = 108/146 (73.97%), Postives = 120/146 (82.19%), Query Frame = 1 

		  

Query: 28  IPQGKAAVMQICGDMNICYVLHIFHSGIPGSLQSLLEDSTYIKVGVGIDNDAVKVFHDHN 87
           + QGKAAVMQICG  + CYV+HI HSGIP +L SLLED T IKVGVGI NDAVKVF DH+
Sbjct: 169 VSQGKAAVMQICGGNSHCYVMHIIHSGIPRNLXSLLEDPTSIKVGVGIANDAVKVFKDHS 228

Query: 88  VSIKSLEDLSSLANQKLGGVPKQWSLSSLVETFICKQLLKPKKIRLGNWEADPLSKAQLQ 147
           VS+K LEDLS LANQKLGG  K+W L SL E  I KQLLKP KIRLGNWEAD LSKAQL+
Sbjct: 229 VSVKDLEDLSYLANQKLGGDAKKWGLGSLTEMLISKQLLKPNKIRLGNWEADVLSKAQLE 288

Query: 148 YAATDAFASWFLYEVLQSFQELPENQ 174
           YAATDAFASW+LYEVL+SF +  EN+
Sbjct: 289 YAATDAFASWYLYEVLKSFPDTAENK 314
[Close]
BLAST of Spo15908.1 vs. NCBI nr
Match: gi|1021029615|gb|KZM87400.1| (hypothetical protein DCAR_024534 [Daucus carota subsp. sativus])

HSP 1 Score: 207.2 bits (526), Expect = 2.300e-50
Identity = 98/145 (67.59%), Postives = 119/145 (82.07%), Query Frame = 1 

		  

Query: 31  GKAAVMQICGDMNICYVLHIFHSGIPGSLQSLLEDSTYIKVGVGIDNDAVKVFHDHNVSI 90
           GKAAVMQICGD N C+V+HI HSGIP SL+SLLED + IKVGV +  DA KV+ DHNVS+
Sbjct: 163 GKAAVMQICGDANHCHVMHIIHSGIPLSLKSLLEDPSCIKVGVNVGGDANKVYKDHNVSV 222

Query: 91  KSLEDLSSLANQKLGGVPKQWSLSSLVETFICKQLLKPKKIRLGNWEADPLSKAQLQYAA 150
           ++L+DLSSLANQKLGG PK+WSL SL ET ICK+L KP ++RLGNWE   LSKAQL+YAA
Sbjct: 223 EALQDLSSLANQKLGGKPKRWSLGSLTETLICKKLPKPTRVRLGNWEVASLSKAQLEYAA 282

Query: 151 TDAFASWFLYEVLQSFQELPENQKK 176
           TDAFASW++YEVL+ F +   N+ +
Sbjct: 283 TDAFASWYMYEVLKKFPDPSSNKNE 307
[Close]
BLAST of Spo15908.1 vs. NCBI nr
Match: gi|567222434|ref|XP_006414846.1| (hypothetical protein EUTSA_v10025908mg [Eutrema salsugineum])

HSP 1 Score: 203.0 bits (515), Expect = 4.400e-49
Identity = 95/141 (67.38%), Postives = 115/141 (81.56%), Query Frame = 1 

		  

Query: 31  GKAAVMQICGDMNICYVLHIFHSGIPGSLQSLLEDSTYIKVGVGIDNDAVKVFHDHNVSI 90
           GK AV+QIC + N C V+HI HSGIP SLQ L+EDST +KVG+GID D+VK+FHDH VSI
Sbjct: 145 GKVAVVQICVENNYCDVIHIIHSGIPQSLQQLIEDSTLVKVGIGIDGDSVKLFHDHGVSI 204

Query: 91  KSLEDLSSLANQKLGGVPKQWSLSSLVETFICKQLLKPKKIRLGNWEADPLSKAQLQYAA 150
           K +EDLS LAN+K+GG  K+W L+SL ET +CK+LLKP +IRLGNWE  PLSK QLQYAA
Sbjct: 205 KDVEDLSDLANKKIGGDSKKWGLASLTETLVCKELLKPNRIRLGNWEVQPLSKEQLQYAA 264

Query: 151 TDAFASWFLYEVLQSFQELPE 172
           TDA+ASW LY+VL   +ELP+
Sbjct: 265 TDAYASWHLYQVL---KELPD 282
[Close]
BLAST of Spo15908.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R6Z6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_104710 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 7.400e-80
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 1 

		  

Query: 28  IPQGKAAVMQICGDMNICYVLHIFHSGIPGSLQSLLEDSTYIKVGVGIDNDAVKVFHDHN 87
           IPQGKAAVMQICGDMNICYVLHIFHSGIPGSLQSLLEDSTYIKVGVGIDNDAVKVFHDHN
Sbjct: 187 IPQGKAAVMQICGDMNICYVLHIFHSGIPGSLQSLLEDSTYIKVGVGIDNDAVKVFHDHN 246

Query: 88  VSIKSLEDLSSLANQKLGGVPKQWSLSSLVETFICKQLLKPKKIRLGNWEADPLSKAQLQ 147
           VSIKSLEDLSSLANQKLGGVPKQWSLSSLVETFICKQLLKPKKIRLGNWEADPLSKAQLQ
Sbjct: 247 VSIKSLEDLSSLANQKLGGVPKQWSLSSLVETFICKQLLKPKKIRLGNWEADPLSKAQLQ 306

Query: 148 YAATDAFASWFLYEVLQSFQELPENQKKN 177
           YAATDAFASWFLYEVLQSFQELPENQKKN
Sbjct: 307 YAATDAFASWFLYEVLQSFQELPENQKKN 335
[Close]
BLAST of Spo15908.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CS06_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g065530 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 8.800e-65
Identity = 126/149 (84.56%), Postives = 137/149 (91.95%), Query Frame = 1 

		  

Query: 28  IPQGKAAVMQICGDMNICYVLHIFHSGIPGSLQSLLEDSTYIKVGVGIDNDAVKVFHDHN 87
           IPQGKAAVMQICGDM  CYVLHI HSGIPGSLQSLLEDS +IKVGVGIDNDAVKVFHDHN
Sbjct: 195 IPQGKAAVMQICGDMTHCYVLHIIHSGIPGSLQSLLEDSEFIKVGVGIDNDAVKVFHDHN 254

Query: 88  VSIKSLEDLSSLANQKLGGVPKQWSLSSLVETFICKQLLKPKKIRLGNWEADPLSKAQLQ 147
           VSIK++EDLS LANQKLGG+ KQWSLSSLVETF CKQLLKPKKIRLGNWEAD LSK QL+
Sbjct: 255 VSIKAVEDLSILANQKLGGL-KQWSLSSLVETFTCKQLLKPKKIRLGNWEADFLSKPQLK 314

Query: 148 YAATDAFASWFLYEVLQSFQELPENQKKN 177
           YAATDAFASW LYEVL+S+ +LP+N+ +N
Sbjct: 315 YAATDAFASWNLYEVLKSYPDLPQNKPEN 342
[Close]
BLAST of Spo15908.1 vs. UniProtKB/TrEMBL
Match: A0A161ZMF9_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_024534 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.600e-50
Identity = 98/145 (67.59%), Postives = 119/145 (82.07%), Query Frame = 1 

		  

Query: 31  GKAAVMQICGDMNICYVLHIFHSGIPGSLQSLLEDSTYIKVGVGIDNDAVKVFHDHNVSI 90
           GKAAVMQICGD N C+V+HI HSGIP SL+SLLED + IKVGV +  DA KV+ DHNVS+
Sbjct: 163 GKAAVMQICGDANHCHVMHIIHSGIPLSLKSLLEDPSCIKVGVNVGGDANKVYKDHNVSV 222

Query: 91  KSLEDLSSLANQKLGGVPKQWSLSSLVETFICKQLLKPKKIRLGNWEADPLSKAQLQYAA 150
           ++L+DLSSLANQKLGG PK+WSL SL ET ICK+L KP ++RLGNWE   LSKAQL+YAA
Sbjct: 223 EALQDLSSLANQKLGGKPKRWSLGSLTETLICKKLPKPTRVRLGNWEVASLSKAQLEYAA 282

Query: 151 TDAFASWFLYEVLQSFQELPENQKK 176
           TDAFASW++YEVL+ F +   N+ +
Sbjct: 283 TDAFASWYMYEVLKKFPDPSSNKNE 307
[Close]
BLAST of Spo15908.1 vs. UniProtKB/TrEMBL
Match: V4MI48_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10025908mg PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 3.000e-49
Identity = 95/141 (67.38%), Postives = 115/141 (81.56%), Query Frame = 1 

		  

Query: 31  GKAAVMQICGDMNICYVLHIFHSGIPGSLQSLLEDSTYIKVGVGIDNDAVKVFHDHNVSI 90
           GK AV+QIC + N C V+HI HSGIP SLQ L+EDST +KVG+GID D+VK+FHDH VSI
Sbjct: 145 GKVAVVQICVENNYCDVIHIIHSGIPQSLQQLIEDSTLVKVGIGIDGDSVKLFHDHGVSI 204

Query: 91  KSLEDLSSLANQKLGGVPKQWSLSSLVETFICKQLLKPKKIRLGNWEADPLSKAQLQYAA 150
           K +EDLS LAN+K+GG  K+W L+SL ET +CK+LLKP +IRLGNWE  PLSK QLQYAA
Sbjct: 205 KDVEDLSDLANKKIGGDSKKWGLASLTETLVCKELLKPNRIRLGNWEVQPLSKEQLQYAA 264

Query: 151 TDAFASWFLYEVLQSFQELPE 172
           TDA+ASW LY+VL   +ELP+
Sbjct: 265 TDAYASWHLYQVL---KELPD 282
[Close]
BLAST of Spo15908.1 vs. UniProtKB/TrEMBL
Match: A0A068URQ4_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00033267001 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 4.000e-49
Identity = 98/143 (68.53%), Postives = 115/143 (80.42%), Query Frame = 1 

		  

Query: 32  KAAVMQICGDMNICYVLHIFHSGIPGSLQSLLEDSTYIKVGVGIDNDAVKVFHDHNVSIK 91
           + AV+QICGD N+CYV+H+ HSGIP +L+SLLE+ T +KVGV I NDA K+F DHNVS+K
Sbjct: 165 ETAVIQICGDKNVCYVMHVIHSGIPQNLKSLLENPTSVKVGVCIANDAFKIFKDHNVSVK 224

Query: 92  SLEDLSSLANQKLGGVPKQWSLSSLVETFICKQLLKPKKIRLGNWEADPLSKAQLQYAAT 151
           +LEDLS LAN KLGG  K+WSLSSL ET ICKQL KP +IRLGNWE D LSK QL YAAT
Sbjct: 225 ALEDLSDLANHKLGGDCKKWSLSSLTETLICKQLPKPNRIRLGNWETDVLSKEQLHYAAT 284

Query: 152 DAFASWFLYEVLQSFQELPENQK 175
           DAF SW+LYE LQ+  E  EN+K
Sbjct: 285 DAFVSWYLYEALQTLPE-AENKK 306
[Close]
BLAST of Spo15908.1 vs. ExPASy Swiss-Prot
Match: WEX_ARATH (Werner Syndrome-like exonuclease OS=Arabidopsis thaliana GN=WEX PE=1 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.500e-49
Identity = 93/138 (67.39%), Postives = 112/138 (81.16%), Query Frame = 1 

		  

Query: 31  GKAAVMQICGDMNICYVLHIFHSGIPGSLQSLLEDSTYIKVGVGIDNDAVKVFHDHNVSI 90
           GK A +QIC D N C V+HIFHSGIP SLQ L+EDST +KVG+GID D+VK+FHD+ VSI
Sbjct: 147 GKVATVQICVDSNYCDVMHIFHSGIPQSLQHLIEDSTLVKVGIGIDGDSVKLFHDYGVSI 206

Query: 91  KSLEDLSSLANQKLGGVPKQWSLSSLVETFICKQLLKPKKIRLGNWEADPLSKAQLQYAA 150
           K +EDLS LANQK+GG  K+W L+SL ET +CK+LLKP +IRLGNWE  PLSK QLQYAA
Sbjct: 207 KDVEDLSDLANQKIGG-DKKWGLASLTETLVCKELLKPNRIRLGNWEFYPLSKQQLQYAA 266

Query: 151 TDAFASWFLYEVLQSFQE 169
           TDA+ASW LY+VL+   +
Sbjct: 267 TDAYASWHLYKVLKDLPD 283
[Close]
BLAST of Spo15908.1 vs. ExPASy Swiss-Prot
Match: WRN_HUMAN (Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=2)

HSP 1 Score: 107.1 bits (266), Expect = 2.000e-22
Identity = 55/135 (40.74%), Postives = 84/135 (62.22%), Query Frame = 1 

		  

Query: 31  GKAAVMQICGDMNICYVLHIFHSGI-PGSLQSLLEDSTYIKVGVGIDNDAVKVFHDHNVS 90
           GK A++Q+C   + CY+ H+    + P  L+ LLE+    K GVGI+ D  K+  D ++ 
Sbjct: 95  GKVALIQLCVSESKCYLFHVSSMSVFPQGLKMLLENKAVKKAGVGIEGDQWKLLRDFDIK 154

Query: 91  IKSLEDLSSLANQKLGGVPKQWSLSSLVETFICKQLLKPKKIRLGNWEADPLSKAQLQYA 150
           +K+  +L+ +AN+KL    + WSL+SLV+  + KQLLK K IR  NW   PL++ Q  YA
Sbjct: 155 LKNFVELTDVANKKLK-CTETWSLNSLVKHLLGKQLLKDKSIRCSNWSKFPLTEDQKLYA 214

Query: 151 ATDAFASWFLYEVLQ 165
           ATDA+A + +Y  L+
Sbjct: 215 ATDAYAGFIIYRNLE 228
[Close]
BLAST of Spo15908.1 vs. ExPASy Swiss-Prot
Match: WRN_MOUSE (Werner syndrome ATP-dependent helicase homolog OS=Mus musculus GN=Wrn PE=1 SV=3)

HSP 1 Score: 103.6 bits (257), Expect = 2.200e-21
Identity = 55/135 (40.74%), Postives = 83/135 (61.48%), Query Frame = 1 

		  

Query: 30  QGKAAVMQICGDMNICYVLHIFHSGI-PGSLQSLLEDSTYIKVGVGIDNDAVKVFHDHNV 89
           + + AV+Q+C   + CY+ HI    + P  L+ LLE+ +  K GVGI+ D  K+  D +V
Sbjct: 88  RSRVAVIQLCVSESKCYLFHISSMSVFPQGLKMLLENKSIKKAGVGIEGDQWKLLRDFDV 147

Query: 90  SIKSLEDLSSLANQKLGGVPKQWSLSSLVETFICKQLLKPKKIRLGNWEADPLSKAQLQY 149
            ++S  +L+ +AN+KL    + WSL+ LV+  + KQLLK K IR  NW   PL++ Q  Y
Sbjct: 148 KLESFVELTDVANEKLK-CAETWSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLY 207

Query: 150 AATDAFASWFLYEVL 164
           AATDA+A   +Y+ L
Sbjct: 208 AATDAYAGLIIYQKL 221
[Close]
BLAST of Spo15908.1 vs. ExPASy Swiss-Prot
Match: WRN_XENLA (Werner syndrome ATP-dependent helicase homolog OS=Xenopus laevis GN=wrn PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.500e-20
Identity = 53/135 (39.26%), Postives = 81/135 (60.00%), Query Frame = 1 

		  

Query: 31  GKAAVMQICGDMNICYVLHIFH-SGIPGSLQSLLEDSTYIKVGVGIDNDAVKVFHDHNVS 90
           GK A++Q+C     CY+ HI   +G P  L+ LLED +  KVGVGI+ D  K+  D+ + 
Sbjct: 89  GKVALIQVCVSEKKCYLFHISPMAGFPKGLKRLLEDESVRKVGVGIEGDQWKLMSDYELK 148

Query: 91  IKSLEDLSSLANQKLGGVPKQWSLSSLVETFICKQLLKPKKIRLGNWEADPLSKAQLQYA 150
           +K   +LS +ANQKL    ++W+ + L++    +QL K K  R  NW+   L++ Q  YA
Sbjct: 149 LKGFIELSEMANQKL-RCKEKWTFNGLIKHLFKEQLYKRKSYRCSNWDIFLLTEDQKLYA 208

Query: 151 ATDAFASWFLYEVLQ 165
           ATDA+A   +Y+ L+
Sbjct: 209 ATDAYAGLLIYKKLE 222
[Close]
BLAST of Spo15908.1 vs. ExPASy Swiss-Prot
Match: WRNXO_DROER (Werner Syndrome-like exonuclease OS=Drosophila erecta GN=WRNexo PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.100e-11
Identity = 49/142 (34.51%), Postives = 69/142 (48.59%), Query Frame = 1 

		  

Query: 31  GKAAVMQICGDMNICYVLHIFH-SGIPGSLQSLLEDSTYIKVGVGIDNDAVKVFHDH-NV 90
           GK+AV+QIC D   CY+  + +   +P  L +L+  S     GV I ND  K+  D   V
Sbjct: 175 GKSAVIQICVDEKCCYIYQLTNLKKLPAVLVALINHSKVRLHGVNIKNDFRKLARDFPEV 234

Query: 91  S----IKSLEDLSSLANQ--KLGGVPKQWSLSSLVETFICKQLLKPKKIRLGNWEADPLS 150
           S    I+   DL    N+  + GG   +WSL  L      K + K KK+R+  W   PL 
Sbjct: 235 SAEPLIEKCVDLGVWCNEVCETGG---RWSLERLTNFIAKKAMDKSKKVRMSKWHVIPLD 294

Query: 151 KAQLQYAATDAFASWFLYEVLQ 165
           + QL YAA D +    +Y  L+
Sbjct: 295 ENQLMYAAIDVYIGQVIYRELE 313
[Close]
BLAST of Spo15908.1 vs. TAIR (Arabidopsis)
Match: AT4G13870.2 (Werner syndrome-like exonuclease)

HSP 1 Score: 197.2 bits (500), Expect = 8.400e-51
Identity = 93/138 (67.39%), Postives = 112/138 (81.16%), Query Frame = 1 

		  

Query: 31  GKAAVMQICGDMNICYVLHIFHSGIPGSLQSLLEDSTYIKVGVGIDNDAVKVFHDHNVSI 90
           GK A +QIC D N C V+HIFHSGIP SLQ L+EDST +KVG+GID D+VK+FHD+ VSI
Sbjct: 147 GKVATVQICVDSNYCDVMHIFHSGIPQSLQHLIEDSTLVKVGIGIDGDSVKLFHDYGVSI 206

Query: 91  KSLEDLSSLANQKLGGVPKQWSLSSLVETFICKQLLKPKKIRLGNWEADPLSKAQLQYAA 150
           K +EDLS LANQK+GG  K+W L+SL ET +CK+LLKP +IRLGNWE  PLSK QLQYAA
Sbjct: 207 KDVEDLSDLANQKIGG-DKKWGLASLTETLVCKELLKPNRIRLGNWEFYPLSKQQLQYAA 266

Query: 151 TDAFASWFLYEVLQSFQE 169
           TDA+ASW LY+VL+   +
Sbjct: 267 TDAYASWHLYKVLKDLPD 283
[Close]
BLAST of Spo15908.1 vs. TAIR (Arabidopsis)
Match: AT4G13885.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 67.8 bits (164), Expect = 7.700e-12
Identity = 30/44 (68.18%), Postives = 36/44 (81.82%), Query Frame = 1 

		  

Query: 125 LLKPKKIRLGNWEADPLSKAQLQYAATDAFASWFLYEVLQSFQE 169
           LLKP +IRLGNWE  PLSK QLQYAATDA+ASW L++VL+   +
Sbjct: 215 LLKPNRIRLGNWEVHPLSKQQLQYAATDAYASWHLHQVLKDLPD 258
[Close]
BLAST of Spo15908.1 vs. TAIR (Arabidopsis)
Match: AT2G34110.1 (BEST Arabidopsis thaliana protein match is: forkhead-associated (FHA) domain-containing protein (TAIR:AT1G34355.1))

HSP 1 Score: 48.9 bits (115), Expect = 3.700e-6
Identity = 37/106 (34.91%), Postives = 54/106 (50.94%), Query Frame = 1 

		  

Query: 1   MCFHLLEKSVILNGNMFFPNVRGMSACIPQGKAAVMQICGDMNICYVLHIFHSGIPGSLQ 60
           + F +L+   IL  N+F  N R  S+    G      +C D +    + +    + G L 
Sbjct: 21  LVFTILKNGAILE-NIFVVNSRDFSSPERNGST----VCDDDDGVEEILV----VGGFLM 80

Query: 61  SLLEDSTYIKVGVGIDNDAVKVFHDHNVSIKSLEDLSSLANQKLGG 107
                ST   V  GID D VK+FH++ VSIK +E+LS L N+K+GG
Sbjct: 81  QHPWSST---VDNGIDGDYVKLFHEYGVSIKDVENLSDLPNRKIGG 114
The following BLAST results are available for this feature:
BLAST of Spo15908.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902203888|gb|KNA14724.1|1.1e-79100.hypothetical protein SOVF_1047... [more]
gi|731325203|ref|XP_010673388.1|1.3e-6484.5PREDICTED: Werner Syndrome-lik... [more]
gi|359477935|ref|XP_003632043.1|1.3e-5373.9PREDICTED: LOW QUALITY PROTEIN... [more]
gi|1021029615|gb|KZM87400.1|2.3e-5067.5hypothetical protein DCAR_0245... [more]
gi|567222434|ref|XP_006414846.1|4.4e-4967.3hypothetical protein EUTSA_v10... [more]
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BLAST of Spo15908.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9R6Z6_SPIOL7.4e-80100.Uncharacterized protein OS=Spi... [more]
A0A0J8CS06_BETVU8.8e-6584.5Uncharacterized protein OS=Bet... [more]
A0A161ZMF9_DAUCA1.6e-5067.5Uncharacterized protein OS=Dau... [more]
V4MI48_EUTSA3.0e-4967.3Uncharacterized protein OS=Eut... [more]
A0A068URQ4_COFCA4.0e-4968.5Uncharacterized protein OS=Cof... [more]
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BLAST of Spo15908.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
WEX_ARATH1.5e-4967.3Werner Syndrome-like exonuclea... [more]
WRN_HUMAN2.0e-2240.7Werner syndrome ATP-dependent ... [more]
WRN_MOUSE2.2e-2140.7Werner syndrome ATP-dependent ... [more]
WRN_XENLA1.5e-2039.2Werner syndrome ATP-dependent ... [more]
WRNXO_DROER2.1e-1134.5Werner Syndrome-like exonuclea... [more]
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BLAST of Spo15908.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT4G13870.28.4e-5167.3Werner syndrome-like exonuclea... [more]
AT4G13885.17.7e-1268.1Polynucleotidyl transferase, r... [more]
AT2G34110.13.7e-634.9BEST Arabidopsis thaliana prot... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR0025623'-5' exonuclease domainPFAMPF01612DNA_pol_A_exo1coord: 31..164
score: 3.9
IPR0025623'-5' exonuclease domainSMARTSM0047435exoneu6coord: 3..168
score: 1.1
IPR012337Ribonuclease H-like domainGENE3D3.30.420.10coord: 31..164
score: 2.7
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 26..165
score: 6.22
NoneNo IPR availablePANTHERPTHR136203-5 EXONUCLEASEcoord: 19..165
score: 9.0

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0006139 nucleobase-containing compound metabolic process
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
molecular_function GO:0008408 3'-5' exonuclease activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003676 nucleic acid binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo050210.65Barchart | Table