Spo15930 (gene)

Overview
NameSpo15930
Typegene
OrganismSpinacia oleracea (Spinach)
Description(Adaptor protein 2 sigma subunit) (Clathrin adaptor complex, small subunit)
LocationSpoScf_04224 : 2472 .. 6034 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTACTTGTTCTTCGCTTTTTCTCCATCTTTTCCTTTTGTTCAACGATTCATTTGCTTTCAAATCGATTTATCCGATGTAATTTTCTCTGCGATCGGTTAGAAAATCTTTTGTCTTTAGCTAGTAGAATTACTGATTTATGGAATTGAAACTTGGAAATTAGTTTGATCTTCTGGATAATTTGTTAATTTGGCGTGTTATCTGTTGATTTTTCTGCATCTTGATGCTTCATCGTTGAAAATATTGGCCAATTGTGTTGTTTTTTAGTCGAACTTAATGTTTTGCCCTAATTTAATGACTCAGCCTTGATCCTAAGCGTATTCTCCATATTTAGCGGAATTATTATAACTACATTGCACTTTGTAGATGCTATGTTGATTTCTGATTCGTAATTGATCGATTTAAACCTTTTTTATGGGAATAAGATGTAATTGGTTGATACATTGTGCGAAACTGGCTGATCAATATGAAATGTTGGAATGTGATTTCCAGATTCAGTTCGTGGTTCTTATTAATCGACAAGGGAAAGTGAGGTTGACAAAATGGTACTCACCTTATGCTCAGAAGGAAAGAACAAAGGTACAAATTTGGAATCTCACCTAGAATTTACTGATTTGTTTTACAAAAAGTTCAGGTTGGTTTATGTTGAGGAATAATCTTGCTGGTAAAACTAATATTAGTGCATAATTTAGTTTCATTCAATTGTTTCTGATGAGAAATTGCAAACTTTTGAAGATTGTCCGTGAACTAAGTGGGTTGGTTCTCTCTCGGGGTCCGAAGCTCTGTAACTTTGTGGATTGGAGAGGATTAAAGATTGTTTACAGAAGGTAATGTTTTTGTTGGGGTTGGTGTTTCATACAGTGAAATAATTATGCTATGTACTGAACTTATCGTATTCAATATTCATTGTTTAGTGTGGGTTCAGTTTCACACTAGTTATGGATCTTGTTATGTTTTCCATGTTGAAAATGTTTCCAGTGTAACTTCACCTGGTAAGATGAATGATTTACAACTGTTCACCCTTCCAAAAATCATTTGCAGTTAACTTATGATCGTTCACCTTTTCAATTTAATATCAAAATATTTTTGCTTTAATCATACTAGAAAATCCTGTGTGGTACTCCATATTTATGGTTGCTTTTAATCAGAGTTTTCCTTGATGGAGAATTACATAGGTGTAGGAATTGGTTGGCAATGATGCCAATGTATTGGCCTTAGACAAGTGATAAAAAATTTAGAACCAAGGCAAAACCATCTGACCAATGAAAATAGAGGAATTGATGAATGTATTATATAATTACTTGGGACTTGTAGGCTTTACCAGGTTTACCTTGTCGAGGGATTAAATTGGGGAGACTCCACTCAAGAGGCCGACAGGGTACTTCAATCCTGTTATTTTTAGTCGTATGTTATTATTTTTGTTCTTTTCAACAAGAGGGGTTGTTCTACCGTTTCTTATGACTAGGAGATTATGGTCAGAAGTTGTGTTAAATCTTCCTTTTTGACTGAATTTTCATCTAGAGCCCTGCCACTGAATGCCTTTGTGAGAACAGCTTCTTCCAGGAATCGAGGATCTGGTTATTCCTAGGGGTGTCATACTGTCATGCCTTTCCTGTTTAGAGTCAGTTGATACTTGATACTCTCAGGCTCTCAGCTTTATCAAAAGCCTTCCATATAATACATAAATCCACTTATTTCTTTCTTTCGTCTACTCAAATTGTTACTGCTGTACCTTATTTTTTTGGCAACTAAGAATGACTTTACTAATACCAAGATCCTTGTAAGAGTAGTACAACTGTACAAGGAGACAATACGGACCTGACCTCCAAAATAAAGCACCTAACACTAGCAGGCTACACTACTAGAAGCTAGACTTACGTCAACAGAAACCTCTTAGCATCTTCTGAGCACCTTCAAGCAAAGATAATAGTTCTAGCAATTACATCAGCTGACAAATCTTATTGGTTGTTGCTTAAAGAGAACAGCGATGCTATGCAGCCATAGTTGATAAACAGCCTCAGCAAAACACATAGCATATAGCTTGTGTTTAACACTTTTTCCTTCCTGCTTTCCCTGCCAGCTTCAGCTCAGCACTGAAACCTTCAACTCTTCTATCTCGCCCAACACTTTAAGCATTCTACTCCAAACCTCAGCAGACACTACACACTAAAAAAAGCAGGTGCTGTACTGTTTCCAAATGATTGTTACATAACACACAAGTTACTGAGAATTGCACTCACCATTTGCTCAACTTGGCAGCAGTAGGCAACCTGTTCAAAGTTGCTAAAACAGATTATGAACACACCTTTAGGACTTGCTTTCCTGTTGCAAAGAACCCTTTTTCAAAAAGAAATTCAAAATCTCCTCGCATCTTCTTATAGATATTCCCCATAGAAAATTTCCCATCCTTCTCCACTTCATTCCAGTCATCAACTTGCTGTATATGTTCTCAACAACTCAGAATCTTTTCTAAGGCCCAGGAAATGCTGCTGTATCTTTTTGTAAAGGGAAGGGACTGGTTTAGATTTTGGAGGCATTGGCCTTCTCCACACTCATATATGTGGTAGCTGAAGGAGCTTGTTTAGAATTTAACACTATACTACTGCCAGTAGCCCTTTCTGCTTGAGCCTCTTTCTAAGGATTTGGTCGCTGCTTTGTGAAAATACTCATATCTTTGCAAATAGTAGTATCTTCAACATTGACTTTCTGCAGTATCTTATGAGTAAATTCCTGTACTTTATCCCTTACAAGTTGTTACCTCTTATCATACAAGATTTTATGTATGAGTTTCGTGTTATCTCAACATCAACACATTTGATGTTTGGATTTTCAAACACCGCCCGATATATACCCTTGGCTCACGTGACATTCTTTTGAAACATTTTTTTTAATGCTCTGTATGTTGCTTTTCATCTTATTGCAGTCACTTCTAGATTATGTAATTCCTCTTCTTCTATGCTGAAACTCATGTTTTCATACATCGGTAACTCGTGCAGGTATGCGAGTTTGTATTTTTGCATGTGCATTGATCAGGATGACAACGAACTAGAGGTTCTCGAAATTGTCCATCACTTTGTTGAGATTCTAGACCGCTATTTTGGAAGTGTGAGTTATTTGTTTCAGCTGTTAGTAGCACACAAGAAGTTAATTTTCTCATTAAGTTAGTTAGTTCTACATCTAAAAAGTAACTAAATTCTTTTGCAGGTCTGTGAGTTGGATTTGATCTTCAACTTTCACAAGGTAATAGTATGCCCTGCATCATGATGTTTCACATTTTTTTATATGTTTTAAATTTCCTTCTGATTTGTTAATGGTATGGCTATGTAGGCATATTATATACTGGACGAGATTTTGATTGCTGGTGAGCTCCAAGAATCAAGCAAAAAAACAGTTGCCCGCCTGATTGCCGCACAGGTACAATATCTAATTGAGTGTTGTATAGTATTTACTGCTGTTTGTGTCAGCTAACATGGAGAATATGGTTTTGCAGGATTCACTGGTTGAGGCTGCAAAAGAACAAGAAAGCTCAATCAGTAATATAATTGCACAAGCCACAAAGTAG

mRNA sequence

ATGATTCAGTTCGTGGTTCTTATTAATCGACAAGGGAAAGTGAGGTTGACAAAATGGTACTCACCTTATGCTCAGAAGGAAAGAACAAAGATTGTCCGTGAACTAAGTGGGTTGGTTCTCTCTCGGGGTCCGAAGCTCTGTAACTTTGTGGATTGGAGAGGATTAAAGATTGTTTACAGAAGGTATGCGAGTTTGTATTTTTGCATGTGCATTGATCAGGATGACAACGAACTAGAGGTTCTCGAAATTGTCCATCACTTTGTTGAGATTCTAGACCGCTATTTTGGAAGTGTCTGTGAGTTGGATTTGATCTTCAACTTTCACAAGGCATATTATATACTGGACGAGATTTTGATTGCTGGTGAGCTCCAAGAATCAAGCAAAAAAACAGTTGCCCGCCTGATTGCCGCACAGGATTCACTGGTTGAGGCTGCAAAAGAACAAGAAAGCTCAATCAGTAATATAATTGCACAAGCCACAAAGTAG

Coding sequence (CDS)

ATGATTCAGTTCGTGGTTCTTATTAATCGACAAGGGAAAGTGAGGTTGACAAAATGGTACTCACCTTATGCTCAGAAGGAAAGAACAAAGATTGTCCGTGAACTAAGTGGGTTGGTTCTCTCTCGGGGTCCGAAGCTCTGTAACTTTGTGGATTGGAGAGGATTAAAGATTGTTTACAGAAGGTATGCGAGTTTGTATTTTTGCATGTGCATTGATCAGGATGACAACGAACTAGAGGTTCTCGAAATTGTCCATCACTTTGTTGAGATTCTAGACCGCTATTTTGGAAGTGTCTGTGAGTTGGATTTGATCTTCAACTTTCACAAGGCATATTATATACTGGACGAGATTTTGATTGCTGGTGAGCTCCAAGAATCAAGCAAAAAAACAGTTGCCCGCCTGATTGCCGCACAGGATTCACTGGTTGAGGCTGCAAAAGAACAAGAAAGCTCAATCAGTAATATAATTGCACAAGCCACAAAGTAG

Protein sequence

MIQFVVLINRQGKVRLTKWYSPYAQKERTKIVRELSGLVLSRGPKLCNFVDWRGLKIVYRRYASLYFCMCIDQDDNELEVLEIVHHFVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVEAAKEQESSISNIIAQATK
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo15930.1Spo15930.1mRNA


Homology
[Close]
BLAST of Spo15930.1 vs. NCBI nr
Match: gi|902232896|gb|KNA22837.1| (hypothetical protein SOVF_030450 [Spinacia oleracea])

HSP 1 Score: 316.6 bits (810), Expect = 2.500e-83
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 1 

		  

Query: 1   MIQFVVLINRQGKVRLTKWYSPYAQKERTKIVRELSGLVLSRGPKLCNFVDWRGLKIVYR 60
           MIQFVVLINRQGKVRLTKWYSPYAQKERTKIVRELSGLVLSRGPKLCNFVDWRGLKIVYR
Sbjct: 1   MIQFVVLINRQGKVRLTKWYSPYAQKERTKIVRELSGLVLSRGPKLCNFVDWRGLKIVYR 60

Query: 61  RYASLYFCMCIDQDDNELEVLEIVHHFVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120
           RYASLYFCMCIDQDDNELEVLEIVHHFVEILDRYFGSVCELDLIFNFHKAYYILDEILIA
Sbjct: 61  RYASLYFCMCIDQDDNELEVLEIVHHFVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120

Query: 121 GELQESSKKTVARLIAAQDSLVEAAKEQESSISNIIAQATK 162
           GELQESSKKTVARLIAAQDSLVEAAKEQESSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVEAAKEQESSISNIIAQATK 161
[Close]
BLAST of Spo15930.1 vs. NCBI nr
Match: gi|731358179|ref|XP_010690595.1| (PREDICTED: AP-1 complex subunit sigma-2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 310.8 bits (795), Expect = 1.400e-81
Identity = 155/161 (96.27%), Postives = 161/161 (100.00%), Query Frame = 1 

		  

Query: 1   MIQFVVLINRQGKVRLTKWYSPYAQKERTKIVRELSGLVLSRGPKLCNFVDWRGLKIVYR 60
           MIQFVVLINRQGKVRLTKWYSPYAQKER+KI+RELSGLVL+RGPKLCNFVDWRGLK+VYR
Sbjct: 1   MIQFVVLINRQGKVRLTKWYSPYAQKERSKILRELSGLVLARGPKLCNFVDWRGLKVVYR 60

Query: 61  RYASLYFCMCIDQDDNELEVLEIVHHFVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120
           RYASLYFCMCIDQDDNELEVLE++HHFVEILDRYFGSVCELDLIFNFHKAYYILDEILIA
Sbjct: 61  RYASLYFCMCIDQDDNELEVLEMIHHFVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120

Query: 121 GELQESSKKTVARLIAAQDSLVEAAKEQESSISNIIAQATK 162
           GELQESSKKTVARLIAAQDSLVEAAKEQESSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVEAAKEQESSISNIIAQATK 161
[Close]
BLAST of Spo15930.1 vs. NCBI nr
Match: gi|255546658|ref|XP_002514388.1| (PREDICTED: AP-1 complex subunit sigma-2 [Ricinus communis])

HSP 1 Score: 298.9 bits (764), Expect = 5.300e-78
Identity = 145/161 (90.06%), Postives = 158/161 (98.14%), Query Frame = 1 

		  

Query: 1   MIQFVVLINRQGKVRLTKWYSPYAQKERTKIVRELSGLVLSRGPKLCNFVDWRGLKIVYR 60
           MIQFV+LI+RQGKVRLTKWYSPY+QKERTK++RELSG++L+RGPKLCNFV+WRG K+VY+
Sbjct: 1   MIQFVLLISRQGKVRLTKWYSPYSQKERTKVIRELSGVILTRGPKLCNFVEWRGYKVVYK 60

Query: 61  RYASLYFCMCIDQDDNELEVLEIVHHFVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120
           RYASLYFCMCIDQDDNELEVLEI+HHFVEILDRYFGSVCELDLIFNFHKAYYILDE+LIA
Sbjct: 61  RYASLYFCMCIDQDDNELEVLEIIHHFVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 121 GELQESSKKTVARLIAAQDSLVEAAKEQESSISNIIAQATK 162
           GELQESSKKTVARLIAAQDSLVE AKEQ SSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161
[Close]
BLAST of Spo15930.1 vs. NCBI nr
Match: gi|848877131|ref|XP_012839008.1| (PREDICTED: AP-1 complex subunit sigma-1 [Erythranthe guttata])

HSP 1 Score: 297.7 bits (761), Expect = 1.200e-77
Identity = 144/161 (89.44%), Postives = 157/161 (97.52%), Query Frame = 1 

		  

Query: 1   MIQFVVLINRQGKVRLTKWYSPYAQKERTKIVRELSGLVLSRGPKLCNFVDWRGLKIVYR 60
           MI FV+LI+RQGKVRLTKWYSPY QKERTK++RELSG++L+RGPKLCNFV+WRG K+VY+
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYTQKERTKVIRELSGMILTRGPKLCNFVEWRGYKVVYK 60

Query: 61  RYASLYFCMCIDQDDNELEVLEIVHHFVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120
           RYASLYFCMCIDQDDNELEVLEI+HHFVEILDRYFGSVCELDLIFNFHKAYYILDEILIA
Sbjct: 61  RYASLYFCMCIDQDDNELEVLEIIHHFVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120

Query: 121 GELQESSKKTVARLIAAQDSLVEAAKEQESSISNIIAQATK 162
           GELQESSKKTVARL+AAQDSLVEAAKE+ SSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLVAAQDSLVEAAKEEASSISNIIAQATK 161
[Close]
BLAST of Spo15930.1 vs. NCBI nr
Match: gi|802536640|ref|XP_012076749.1| (PREDICTED: AP-1 complex subunit sigma-2 [Jatropha curcas])

HSP 1 Score: 297.0 bits (759), Expect = 2.000e-77
Identity = 144/161 (89.44%), Postives = 157/161 (97.52%), Query Frame = 1 

		  

Query: 1   MIQFVVLINRQGKVRLTKWYSPYAQKERTKIVRELSGLVLSRGPKLCNFVDWRGLKIVYR 60
           MI FV+LI+RQGKVRLTKWYSPY+QKERTK+VRELSG++L+RGPKLCNFV+WRG K+VY+
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERTKVVRELSGVILTRGPKLCNFVEWRGYKVVYK 60

Query: 61  RYASLYFCMCIDQDDNELEVLEIVHHFVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120
           RYASLYFCMCIDQDDNELEVLEI+HHFVEILDRYFGSVCELDLIFNFHKAYY+LDE+LIA
Sbjct: 61  RYASLYFCMCIDQDDNELEVLEIIHHFVEILDRYFGSVCELDLIFNFHKAYYVLDELLIA 120

Query: 121 GELQESSKKTVARLIAAQDSLVEAAKEQESSISNIIAQATK 162
           GELQESSKKTVARLIAAQDSLVE AKEQ SSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161
[Close]
BLAST of Spo15930.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RVH3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_030450 PE=4 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 1.700e-83
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 1 

		  

Query: 1   MIQFVVLINRQGKVRLTKWYSPYAQKERTKIVRELSGLVLSRGPKLCNFVDWRGLKIVYR 60
           MIQFVVLINRQGKVRLTKWYSPYAQKERTKIVRELSGLVLSRGPKLCNFVDWRGLKIVYR
Sbjct: 1   MIQFVVLINRQGKVRLTKWYSPYAQKERTKIVRELSGLVLSRGPKLCNFVDWRGLKIVYR 60

Query: 61  RYASLYFCMCIDQDDNELEVLEIVHHFVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120
           RYASLYFCMCIDQDDNELEVLEIVHHFVEILDRYFGSVCELDLIFNFHKAYYILDEILIA
Sbjct: 61  RYASLYFCMCIDQDDNELEVLEIVHHFVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120

Query: 121 GELQESSKKTVARLIAAQDSLVEAAKEQESSISNIIAQATK 162
           GELQESSKKTVARLIAAQDSLVEAAKEQESSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVEAAKEQESSISNIIAQATK 161
[Close]
BLAST of Spo15930.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BKQ5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g216020 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 9.400e-82
Identity = 155/161 (96.27%), Postives = 161/161 (100.00%), Query Frame = 1 

		  

Query: 1   MIQFVVLINRQGKVRLTKWYSPYAQKERTKIVRELSGLVLSRGPKLCNFVDWRGLKIVYR 60
           MIQFVVLINRQGKVRLTKWYSPYAQKER+KI+RELSGLVL+RGPKLCNFVDWRGLK+VYR
Sbjct: 1   MIQFVVLINRQGKVRLTKWYSPYAQKERSKILRELSGLVLARGPKLCNFVDWRGLKVVYR 60

Query: 61  RYASLYFCMCIDQDDNELEVLEIVHHFVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120
           RYASLYFCMCIDQDDNELEVLE++HHFVEILDRYFGSVCELDLIFNFHKAYYILDEILIA
Sbjct: 61  RYASLYFCMCIDQDDNELEVLEMIHHFVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120

Query: 121 GELQESSKKTVARLIAAQDSLVEAAKEQESSISNIIAQATK 162
           GELQESSKKTVARLIAAQDSLVEAAKEQESSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVEAAKEQESSISNIIAQATK 161
[Close]
BLAST of Spo15930.1 vs. UniProtKB/TrEMBL
Match: B9RKW9_RICCO (Clathrin coat assembly protein ap19, putative OS=Ricinus communis GN=RCOM_1563770 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 3.700e-78
Identity = 145/161 (90.06%), Postives = 158/161 (98.14%), Query Frame = 1 

		  

Query: 1   MIQFVVLINRQGKVRLTKWYSPYAQKERTKIVRELSGLVLSRGPKLCNFVDWRGLKIVYR 60
           MIQFV+LI+RQGKVRLTKWYSPY+QKERTK++RELSG++L+RGPKLCNFV+WRG K+VY+
Sbjct: 1   MIQFVLLISRQGKVRLTKWYSPYSQKERTKVIRELSGVILTRGPKLCNFVEWRGYKVVYK 60

Query: 61  RYASLYFCMCIDQDDNELEVLEIVHHFVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120
           RYASLYFCMCIDQDDNELEVLEI+HHFVEILDRYFGSVCELDLIFNFHKAYYILDE+LIA
Sbjct: 61  RYASLYFCMCIDQDDNELEVLEIIHHFVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 121 GELQESSKKTVARLIAAQDSLVEAAKEQESSISNIIAQATK 162
           GELQESSKKTVARLIAAQDSLVE AKEQ SSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161
[Close]
BLAST of Spo15930.1 vs. UniProtKB/TrEMBL
Match: A0A022RCH5_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a015309mg PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 8.300e-78
Identity = 144/161 (89.44%), Postives = 157/161 (97.52%), Query Frame = 1 

		  

Query: 1   MIQFVVLINRQGKVRLTKWYSPYAQKERTKIVRELSGLVLSRGPKLCNFVDWRGLKIVYR 60
           MI FV+LI+RQGKVRLTKWYSPY QKERTK++RELSG++L+RGPKLCNFV+WRG K+VY+
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYTQKERTKVIRELSGMILTRGPKLCNFVEWRGYKVVYK 60

Query: 61  RYASLYFCMCIDQDDNELEVLEIVHHFVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120
           RYASLYFCMCIDQDDNELEVLEI+HHFVEILDRYFGSVCELDLIFNFHKAYYILDEILIA
Sbjct: 61  RYASLYFCMCIDQDDNELEVLEIIHHFVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120

Query: 121 GELQESSKKTVARLIAAQDSLVEAAKEQESSISNIIAQATK 162
           GELQESSKKTVARL+AAQDSLVEAAKE+ SSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLVAAQDSLVEAAKEEASSISNIIAQATK 161
[Close]
BLAST of Spo15930.1 vs. UniProtKB/TrEMBL
Match: A0A067LR17_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10776 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 1.400e-77
Identity = 144/161 (89.44%), Postives = 157/161 (97.52%), Query Frame = 1 

		  

Query: 1   MIQFVVLINRQGKVRLTKWYSPYAQKERTKIVRELSGLVLSRGPKLCNFVDWRGLKIVYR 60
           MI FV+LI+RQGKVRLTKWYSPY+QKERTK+VRELSG++L+RGPKLCNFV+WRG K+VY+
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERTKVVRELSGVILTRGPKLCNFVEWRGYKVVYK 60

Query: 61  RYASLYFCMCIDQDDNELEVLEIVHHFVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120
           RYASLYFCMCIDQDDNELEVLEI+HHFVEILDRYFGSVCELDLIFNFHKAYY+LDE+LIA
Sbjct: 61  RYASLYFCMCIDQDDNELEVLEIIHHFVEILDRYFGSVCELDLIFNFHKAYYVLDELLIA 120

Query: 121 GELQESSKKTVARLIAAQDSLVEAAKEQESSISNIIAQATK 162
           GELQESSKKTVARLIAAQDSLVE AKEQ SSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161
[Close]
BLAST of Spo15930.1 vs. ExPASy Swiss-Prot
Match: AP1S2_ARATH (AP-1 complex subunit sigma-2 OS=Arabidopsis thaliana GN=AAP19-2 PE=2 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.000e-76
Identity = 136/160 (85.00%), Postives = 155/160 (96.88%), Query Frame = 1 

		  

Query: 1   MIQFVVLINRQGKVRLTKWYSPYAQKERTKIVRELSGLVLSRGPKLCNFVDWRGLKIVYR 60
           MI FV+L++RQGKVRLTKWYSPYAQKER+K++RELSG++L+RGPKLCNFV+WRG K+VY+
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYK 60

Query: 61  RYASLYFCMCIDQDDNELEVLEIVHHFVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120
           RYASLYFCMCIDQ+DNELEVLEI+HH+VEILDRYFGSVCELDLIFNFHKAYYILDE+LIA
Sbjct: 61  RYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 121 GELQESSKKTVARLIAAQDSLVEAAKEQESSISNIIAQAT 161
           GELQESSKKTVAR+I+AQD LVE AKE+ SSISNIIAQAT
Sbjct: 121 GELQESSKKTVARIISAQDQLVEVAKEEASSISNIIAQAT 160
[Close]
BLAST of Spo15930.1 vs. ExPASy Swiss-Prot
Match: AP1S1_ARATH (AP-1 complex subunit sigma-1 OS=Arabidopsis thaliana GN=AAP19-1 PE=1 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 8.500e-76
Identity = 134/161 (83.23%), Postives = 154/161 (95.65%), Query Frame = 1 

		  

Query: 1   MIQFVVLINRQGKVRLTKWYSPYAQKERTKIVRELSGLVLSRGPKLCNFVDWRGLKIVYR 60
           MI FV+L++RQGKVRLTKWYSPY QKER+K++RELSG++L+RGPKLCNF++WRG K+VY+
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYTQKERSKVIRELSGVILNRGPKLCNFIEWRGYKVVYK 60

Query: 61  RYASLYFCMCIDQDDNELEVLEIVHHFVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120
           RYASLYFCMCID+ DNELEVLEI+HH+VEILDRYFGSVCELDLIFNFHKAYYILDE+LIA
Sbjct: 61  RYASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 121 GELQESSKKTVARLIAAQDSLVEAAKEQESSISNIIAQATK 162
           GELQESSKKTVAR+I+AQD LVE AKE+ SSISNIIAQATK
Sbjct: 121 GELQESSKKTVARIISAQDQLVEVAKEEASSISNIIAQATK 161
[Close]
BLAST of Spo15930.1 vs. ExPASy Swiss-Prot
Match: AP1S2_DICDI (AP-1 complex subunit sigma-2 OS=Dictyostelium discoideum GN=ap1s2 PE=3 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.200e-55
Identity = 96/140 (68.57%), Postives = 125/140 (89.29%), Query Frame = 1 

		  

Query: 4   FVVLINRQGKVRLTKWYSPYAQKERTKIVRELSGLVLSRGPKLCNFVDWRGLKIVYRRYA 63
           F++L++RQGK RLTKWYSP+  KE+++  RE+  +VL+R PKLCNF++W+  KI+++RYA
Sbjct: 5   FLLLLSRQGKTRLTKWYSPFTNKEKSRFTREIGNMVLNRPPKLCNFLEWKEYKIIFKRYA 64

Query: 64  SLYFCMCIDQDDNELEVLEIVHHFVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGEL 123
           SLYF +C D++DNEL VLEI+HHFVEILDRYFG+VCELDLIFNFHKAYYILDE+++AGEL
Sbjct: 65  SLYFVVCCDREDNELIVLEIIHHFVEILDRYFGNVCELDLIFNFHKAYYILDELIMAGEL 124

Query: 124 QESSKKTVARLIAAQDSLVE 144
           QE+SKKTV RLI+ QD+L+E
Sbjct: 125 QETSKKTVLRLISQQDTLLE 144
[Close]
BLAST of Spo15930.1 vs. ExPASy Swiss-Prot
Match: AP1S2_BOVIN (AP-1 complex subunit sigma-2 OS=Bos taurus GN=AP1S2 PE=2 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 6.800e-49
Identity = 92/149 (61.74%), Postives = 117/149 (78.52%), Query Frame = 1 

		  

Query: 2   IQFVVLINRQGKVRLTKWYSPYAQKERTKIVRELSGLVLSRGPKLCNFVDWRGLKIVYRR 61
           +QF++L +RQGK+RL KWY P + KE+ KI REL   VL+R PK+C+F++WR LKIVY+R
Sbjct: 1   MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60

Query: 62  YASLYFCMCIDQDDNELEVLEIVHHFVEILDRYFGSVCELDLIFNFHKAYYILDEILIAG 121
           YASLYFC  I+  DNEL  LEI+H +VE+LD+YFGSVCELD+IFNF KAY+ILDE L+ G
Sbjct: 61  YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120

Query: 122 ELQESSKKTVARLIAAQDSLVEAAKEQES 151
           E+QE+SKK V + I   D L E AKE E+
Sbjct: 121 EVQETSKKNVLKAIEQADLLQEDAKEAET 149
[Close]
BLAST of Spo15930.1 vs. ExPASy Swiss-Prot
Match: AP1S2_MOUSE (AP-1 complex subunit sigma-2 OS=Mus musculus GN=Ap1s2 PE=1 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 6.800e-49
Identity = 92/149 (61.74%), Postives = 117/149 (78.52%), Query Frame = 1 

		  

Query: 2   IQFVVLINRQGKVRLTKWYSPYAQKERTKIVRELSGLVLSRGPKLCNFVDWRGLKIVYRR 61
           +QF++L +RQGK+RL KWY P + KE+ KI REL   VL+R PK+C+F++WR LKIVY+R
Sbjct: 1   MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60

Query: 62  YASLYFCMCIDQDDNELEVLEIVHHFVEILDRYFGSVCELDLIFNFHKAYYILDEILIAG 121
           YASLYFC  I+  DNEL  LEI+H +VE+LD+YFGSVCELD+IFNF KAY+ILDE L+ G
Sbjct: 61  YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120

Query: 122 ELQESSKKTVARLIAAQDSLVEAAKEQES 151
           E+QE+SKK V + I   D L E AKE E+
Sbjct: 121 EVQETSKKNVLKAIEQADLLQEDAKEAET 149
[Close]
BLAST of Spo15930.1 vs. TAIR (Arabidopsis)
Match: AT4G35410.2 (Clathrin adaptor complex small chain family protein)

HSP 1 Score: 287.3 bits (734), Expect = 5.700e-78
Identity = 136/160 (85.00%), Postives = 155/160 (96.88%), Query Frame = 1 

		  

Query: 1   MIQFVVLINRQGKVRLTKWYSPYAQKERTKIVRELSGLVLSRGPKLCNFVDWRGLKIVYR 60
           MI FV+L++RQGKVRLTKWYSPYAQKER+K++RELSG++L+RGPKLCNFV+WRG K+VY+
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYK 60

Query: 61  RYASLYFCMCIDQDDNELEVLEIVHHFVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120
           RYASLYFCMCIDQ+DNELEVLEI+HH+VEILDRYFGSVCELDLIFNFHKAYYILDE+LIA
Sbjct: 61  RYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 121 GELQESSKKTVARLIAAQDSLVEAAKEQESSISNIIAQAT 161
           GELQESSKKTVAR+I+AQD LVE AKE+ SSISNIIAQAT
Sbjct: 121 GELQESSKKTVARIISAQDQLVEVAKEEASSISNIIAQAT 160
[Close]
BLAST of Spo15930.1 vs. TAIR (Arabidopsis)
Match: AT2G17380.1 (associated protein 19)

HSP 1 Score: 284.3 bits (726), Expect = 4.800e-77
Identity = 134/161 (83.23%), Postives = 154/161 (95.65%), Query Frame = 1 

		  

Query: 1   MIQFVVLINRQGKVRLTKWYSPYAQKERTKIVRELSGLVLSRGPKLCNFVDWRGLKIVYR 60
           MI FV+L++RQGKVRLTKWYSPY QKER+K++RELSG++L+RGPKLCNF++WRG K+VY+
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYTQKERSKVIRELSGVILNRGPKLCNFIEWRGYKVVYK 60

Query: 61  RYASLYFCMCIDQDDNELEVLEIVHHFVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120
           RYASLYFCMCID+ DNELEVLEI+HH+VEILDRYFGSVCELDLIFNFHKAYYILDE+LIA
Sbjct: 61  RYASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 121 GELQESSKKTVARLIAAQDSLVEAAKEQESSISNIIAQATK 162
           GELQESSKKTVAR+I+AQD LVE AKE+ SSISNIIAQATK
Sbjct: 121 GELQESSKKTVARIISAQDQLVEVAKEEASSISNIIAQATK 161
[Close]
BLAST of Spo15930.1 vs. TAIR (Arabidopsis)
Match: AT1G47830.1 (SNARE-like superfamily protein)

HSP 1 Score: 159.1 bits (401), Expect = 2.300e-39
Identity = 74/141 (52.48%), Postives = 103/141 (73.05%), Query Frame = 1 

		  

Query: 1   MIQFVVLINRQGKVRLTKWYSPYAQKERTKIVRELSGLVLSRGPKLCNFVDWRGLKIVYR 60
           MI+F++L NRQGK RL K+Y P  + E+ K+  E+  LV++R  K  NFV++R  K++YR
Sbjct: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDAKFTNFVEFRTHKVIYR 60

Query: 61  RYASLYFCMCIDQDDNELEVLEIVHHFVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120
           RYA L+F +C+D  DNEL  LE +H FVEILD +F +VCELDL+FNFHK Y ILDE ++A
Sbjct: 61  RYAGLFFSVCVDITDNELAYLESIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120

Query: 121 GELQESSKKTVARLIAAQDSL 142
           GELQE+SK+ +   ++  + L
Sbjct: 121 GELQETSKRAIIERMSELEKL 141
[Close]
BLAST of Spo15930.1 vs. TAIR (Arabidopsis)
Match: AT2G19790.1 (SNARE-like superfamily protein)

HSP 1 Score: 125.9 bits (315), Expect = 2.200e-29
Identity = 57/138 (41.30%), Postives = 96/138 (69.57%), Query Frame = 1 

		  

Query: 2   IQFVVLINRQGKVRLTKWYSPYAQKERTKIVRELSGLVLSRGPKLCNFVDWRGLKIVYRR 61
           I+F++++N+QG+ RL ++Y     +ER  +  E+    L+R  + C+FV+ R  KIVYRR
Sbjct: 3   IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNYKIVYRR 62

Query: 62  YASLYFCMCIDQDDNELEVLEIVHHFVEILDRYFGSVCELDLIFNFHKAYYILDEILIAG 121
           YASL+F + +D D+NEL +LE +H  VE +D++FG+VCELD++F+  KA+++L+E+++ G
Sbjct: 63  YASLFFMVGVDDDENELAILEFIHLLVETMDKHFGNVCELDIMFHLEKAHFMLEEMVMNG 122

Query: 122 ELQESSKKTVARLIAAQD 140
            + E+SK  +   I   D
Sbjct: 123 CIVETSKANILSPIQLMD 140
[Close]
BLAST of Spo15930.1 vs. TAIR (Arabidopsis)
Match: AT3G50860.1 (Clathrin adaptor complex small chain family protein)

HSP 1 Score: 104.8 bits (260), Expect = 5.200e-23
Identity = 55/162 (33.95%), Postives = 100/162 (61.73%), Query Frame = 1 

		  

Query: 1   MIQFVVLINRQGKVRLTKWYSPYAQKERTKIVRELSGLVLSRGPKLCNFVDWRGL----- 60
           MI+ V+++N QGK RL K+Y     +++ +++R +  ++ SR   + NF++   L     
Sbjct: 1   MIKAVMMMNTQGKPRLAKFYDYLPVEKQQELIRGVFSVLCSRPENVSNFLEIESLFGPDS 60

Query: 61  KIVYRRYASLYFCMCIDQDDNELEVLEIVHHFVEILDRYFGSVCELDLIFNFHKAYYILD 120
           ++VY+ YA+LYF +  D  +NEL +L+++   VE LD+ F +VCELD++FN+ K + +LD
Sbjct: 61  RLVYKHYATLYFVLVFDGSENELAMLDLIQVLVETLDKCFSNVCELDIVFNYSKMHAVLD 120

Query: 121 EILIAGELQESSKKTVARLIAAQDSLVEAAKEQESSISNIIA 158
           EI+  G++ E+S   V + +  + S +EAA    S +   ++
Sbjct: 121 EIVFGGQVLETSSAEVMKAV-EEISKLEAASNSISLVPKSVS 161
The following BLAST results are available for this feature:
BLAST of Spo15930.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902232896|gb|KNA22837.1|2.5e-83100.hypothetical protein SOVF_0304... [more]
gi|731358179|ref|XP_010690595.1|1.4e-8196.2PREDICTED: AP-1 complex subuni... [more]
gi|255546658|ref|XP_002514388.1|5.3e-7890.0PREDICTED: AP-1 complex subuni... [more]
gi|848877131|ref|XP_012839008.1|1.2e-7789.4PREDICTED: AP-1 complex subuni... [more]
gi|802536640|ref|XP_012076749.1|2.0e-7789.4PREDICTED: AP-1 complex subuni... [more]
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BLAST of Spo15930.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RVH3_SPIOL1.7e-83100.Uncharacterized protein OS=Spi... [more]
A0A0J8BKQ5_BETVU9.4e-8296.2Uncharacterized protein OS=Bet... [more]
B9RKW9_RICCO3.7e-7890.0Clathrin coat assembly protein... [more]
A0A022RCH5_ERYGU8.3e-7889.4Uncharacterized protein OS=Ery... [more]
A0A067LR17_JATCU1.4e-7789.4Uncharacterized protein OS=Jat... [more]
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BLAST of Spo15930.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
AP1S2_ARATH1.0e-7685.0AP-1 complex subunit sigma-2 O... [more]
AP1S1_ARATH8.5e-7683.2AP-1 complex subunit sigma-1 O... [more]
AP1S2_DICDI2.2e-5568.5AP-1 complex subunit sigma-2 O... [more]
AP1S2_BOVIN6.8e-4961.7AP-1 complex subunit sigma-2 O... [more]
AP1S2_MOUSE6.8e-4961.7AP-1 complex subunit sigma-2 O... [more]
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BLAST of Spo15930.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT4G35410.25.7e-7885.0Clathrin adaptor complex small... [more]
AT2G17380.14.8e-7783.2associated protein 19[more]
AT1G47830.12.3e-3952.4SNARE-like superfamily protein[more]
AT2G19790.12.2e-2941.3SNARE-like superfamily protein[more]
AT3G50860.15.2e-2333.9Clathrin adaptor complex small... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000804Clathrin adaptor complex, small chainPROSITEPS00989CLAT_ADAPTOR_Scoord: 57..67
scor
IPR011012Longin-like domainunknownSSF64356SNARE-likecoord: 1..139
score: 1.69
IPR016635Adaptor protein complex, sigma subunitPIRPIRSF015588AP_complex_sigmacoord: 1..152
score: 2.1
IPR016635Adaptor protein complex, sigma subunitPANTHERPTHR11753CLATHRIN COAT ASSEMBLY PROTEINcoord: 1..161
score: 1.7E
IPR022775AP complex, mu/sigma subunitPFAMPF01217Clat_adaptor_scoord: 1..140
score: 5.0
NoneNo IPR availableGENE3D3.30.450.60coord: 1..141
score: 2.7
NoneNo IPR availablePANTHERPTHR11753:SF16SUBFAMILY NOT NAMEDcoord: 1..161
score: 1.7E

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0015031 protein transport
biological_process GO:0009627 systemic acquired resistance
biological_process GO:0006364 rRNA processing
biological_process GO:0009651 response to salt stress
biological_process GO:0034976 response to endoplasmic reticulum stress
biological_process GO:0047484 regulation of response to osmotic stress
biological_process GO:0018279 protein N-linked glycosylation via asparagine
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0005982 starch metabolic process
biological_process GO:0045489 pectin biosynthetic process
biological_process GO:0009117 nucleotide metabolic process
biological_process GO:0016192 vesicle-mediated transport
biological_process GO:0016070 RNA metabolic process
biological_process GO:0006810 transport
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0006468 protein phosphorylation
biological_process GO:0008152 metabolic process
biological_process GO:0015768 maltose transport
biological_process GO:0007264 small GTPase mediated signal transduction
cellular_component GO:0031461 cullin-RING ubiquitin ligase complex
cellular_component GO:0016020 membrane
cellular_component GO:0030117 membrane coat
cellular_component GO:0008250 oligosaccharyltransferase complex
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005802 trans-Golgi network
cellular_component GO:0005768 endosome
cellular_component GO:0000139 Golgi membrane
cellular_component GO:0005634 nucleus
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005829 cytosol
cellular_component GO:0005622 intracellular
molecular_function GO:0005525 GTP binding
molecular_function GO:0015423 maltose-transporting ATPase activity
molecular_function GO:0031625 ubiquitin protein ligase binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0008565 protein transporter activity
molecular_function GO:0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity
RNA-Seq Expression