Spo15939 (gene) | SpinachBase

Overview


Name	Spo15939
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Serine/arginine-rich splicing factor 7
Location	chr1 : 20918441 .. 20921305 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGGAATTGCAATTTGACAGTCCTAGGCATAACTGAAATAAAAGGAATCGAAGAGGGAGTTGAAGTTGAAAATAGGCAGAAGACTAAAACCCTAAAAAACAGACCCAAAAGTAAGAGGTTTCAAACTGTCTCCGGAGAATTGAGAAGCTTGCTTTCGCTCGGAGGTTTTTCTCTCTTCACTCAGGTTCACATCTCTCTCTTCCTCTCTCGTCTAGATTGCTTTTGTCTGCAATTGTTATCAGTTCTATAAGTCACCGCCAGATCCATGTTGAAGGTTTCACTCGTCGGTCTTCCAAACCCTAATTCCTGAATTCATTCCGTTTTCTTGTTCTTCGCATTAACTTTGTGTTGATTTTCGTTAACTTTCTTAATCTTTTCGATTCAATTGATAGGAAAGTCTCGGACTTTTTGTTGTTAGGTGTTAATTCTGCACAATGTCGCGTGTATACGTTGGAAACTTGGATCCACGGGTGACTGAGCGAGAGCTTGAAGACGAGTTTCGTGTTTTCGGAGTTATTCGAAGGTCAGGCTTCCTCAATTGGATCTTTGTTCTTGATTAGTTTTTTATTAAATTGAAAATTCAAAGAGAAGAGAGGAGGTCAAGGTTTTGTTTTTTTATGCTGATTTCGACTTGTGTCAGTTAGTTTTTGTCTAATCCCTTGAAATCTGTTGTGATTTGCAGTGTTTGGGTTGCTAGAAGACCTCCTGGCTATGCATTCATTGATTTTGATGATACTAGGGACGCCAAAGATGCCATTCATGCATTAGATGGTATTTCCTTTACTTAAATTTATGGACTTGATGATTATTAGGATAGACTCTAGGCGTGGTTGTTCTACCGTCTTATGTTATACATTTGATTTCTGCAAATTCAATTTTTTTCGACTCTATTCATGATCTATCTTTGTTTTTTTTTTTAATGGGGGTGGCTCCTAGGAGATAGGGTGAAGATGGTCTTTCATAATAGCCTTTTGTTGTCCTCTGTCTTTTACTGAATTATTGCTTCAACATCTTTTTTGTGTCTGTATATGTGTGTGCAATTTGTGCACTGCTACAACAGGTGTGTGTGCATTTGCGTGCATGTTTTTTGTGTTTCAGTAATGATTTTTTTTTTGCCTTAAACATTTAATATTTTATGAGATGGATTTGTTCAGAGAAATATATAAGATGTTGACTTAGTAACCCTCTCCACTCTCCAAGAATATTAAGAATCAAGAGATAAAGTGTTCATAGCATTGATCATTTTGACATTTTTACTTTCAAAGTGTTTTGGTTGTTTCTTTGGTAATTTAAATTGTCCCAATGAGAAACATTAGTACACCTCAAAATAACTGATCTTAACAATTAACTTGGAAGATCCAGTTATCTAACTTCCCCACCCTTCCCCAAGAAATTGTTAAGTATAAATTTCCGTACTGTAACAGGATATGCAACTTGTATTCTCCTTTTATGCTCTGCATCCAGGTCAATCTCTTTGGCCTTGATGTTTTAAATGAGCACATATGTATGTCCTTGCTTCAACTTTCTGTGATTATTCCATGTTCTAGAATATCCCTTTTTTGGCTTCAAATGATCTATTTCGCGACTGTTGCATTGAGGTTGACTACTATTTCCATTTCTATTGCACCCTATCAAAGCCAGTGATGTTCATCTATGAATCCATCTATAAATGTTTATGGAGGCCTTAGCTTGTTGACGAGGTACATGTTAACCATTCTTGTATGACATTATCAGGTCTCTTTGTCACTGAGTATTAGCTTAGTGGTTCATACTTAGCATACAGTTTTTGTGTCTTAGTTTGTTTTGGATGTATGGATGTAGTATCTAACATAAGTTAATCCTGTGTTTCATTTTCAGTTGCCGTTACCGAGTAATTGTGTTTCTTATCATTGGTGTCCTTGCTCTTTTTCTTCCCTCAGGTAAAAATGGCTGGAGAGTTGAGCTTTCACACAATTCTAGAGGTGGGGGTGGCGGTCGTGGTGGTGGGCGAGGAGGAGGTGGTGGGCGAGGTGGGTCTGATTTGAAGTGTTATGAGTGTGGCGAGCCTGGTCATTTCGCTCGTGAATGCCGTTTACGTGTTGGTGGTGGTGGTGGTGGTGGAGGGGGAAGGCGACGCAGCCGTAGTCCAAGATACAGGAGGAGCCCAAGTTATGGTAGGAGGTATGGTCATCAAGATTATTACTGATTGTATTAGTTTTCTGGGCTTCCCTCCCATGAAAGTTAACTCCAATAAATTTATTATTCTGGTTTAAGTTTTATTCGGGGGTGAGGGAGGGATCAGCATTTCTTTGGATTTAGATATTATTATTATTATTGGCGTTTACAATTTGTATTTTTTTAGCAGGAGCTACAGTCCCCGTGGTAGATCTCCACCTCCACGCCGTCGCAGTCCCTCACCTCGTGGAAGAAGCTACAGCAGGTCACCAGCTCCTTATCGTGCTCGTGAGGAACTGCCTTATGCAAACGGGTAAATGTCCTATATGTTACTTGTGTAATTGTATGAAGTGTTGGTTTTGTCCTGCTTTTGTGTGTTGGTGTAGCTGCTACTTCTTTTCTTTAGAGTTTAGACTTGTGACCTGCCCCATTTTTCTTGCGCTGTTTTCAATACTATAGGAAAGTTATGTTATTTTAATTTATCTAGGAACCAATTATTATGGAACAGGCTGCATTTAACCTTTATGCCGTACTATGTTTGTTTGATGTGTCTTGTGGTTAAGTGTCAATGGTTTTGGGGGTTCGTGTTTAAATAATTAAATTGTGCACTTTGCACTCAAGTTAGAAGAGTCAATTTGCGAATTTATGTTGATAAACTTTTTTTATGCGTGCAGAAATGGTGTCAGGGAGAGACGTCGCAGCAGGAGCTGA

mRNA sequence

GTGGAATTGCAATTTGACAGTCCTAGGCATAACTGAAATAAAAGGAATCGAAGAGGGAGTTGAAGTTGAAAATAGGCAGAAGACTAAAACCCTAAAAAACAGACCCAAAAGTAAGAGGTTTCAAACTGTCTCCGGAGAATTGAGAAGCTTGCTTTCGCTCGGAGGTTTTTCTCTCTTCACTCAGGTGTTAATTCTGCACAATGTCGCGTGTATACGTTGGAAACTTGGATCCACGGGTGACTGAGCGAGAGCTTGAAGACGAGTTTCGTGTTTTCGGAGTTATTCGAAGTGTTTGGGTTGCTAGAAGACCTCCTGGCTATGCATTCATTGATTTTGATGATACTAGGGACGCCAAAGATGCCATTCATGCATTAGATGGTAAAAATGGCTGGAGAGTTGAGCTTTCACACAATTCTAGAGGTGGGGGTGGCGGTCGTGGTGGTGGGCGAGGAGGAGGTGGTGGGCGAGGTGGGTCTGATTTGAAGTGTTATGAGTGTGGCGAGCCTGGTCATTTCGCTCGTGAATGCCGTTTACGTGTTGGTGGTGGTGGTGGTGGTGGAGGGGGAAGGCGACGCAGCCGTAGTCCAAGATACAGGAGGAGCCCAAGTTATGGTAGGAGGAGCTACAGTCCCCGTGGTAGATCTCCACCTCCACGCCGTCGCAGTCCCTCACCTCGTGGAAGAAGCTACAGCAGGTCACCAGCTCCTTATCGTGCTCGTGAGGAACTGCCTTATGCAAACGGAAATGGTGTCAGGGAGAGACGTCGCAGCAGGAGCTGA

Coding sequence (CDS)

ATGTCGCGTGTATACGTTGGAAACTTGGATCCACGGGTGACTGAGCGAGAGCTTGAAGACGAGTTTCGTGTTTTCGGAGTTATTCGAAGTGTTTGGGTTGCTAGAAGACCTCCTGGCTATGCATTCATTGATTTTGATGATACTAGGGACGCCAAAGATGCCATTCATGCATTAGATGGTAAAAATGGCTGGAGAGTTGAGCTTTCACACAATTCTAGAGGTGGGGGTGGCGGTCGTGGTGGTGGGCGAGGAGGAGGTGGTGGGCGAGGTGGGTCTGATTTGAAGTGTTATGAGTGTGGCGAGCCTGGTCATTTCGCTCGTGAATGCCGTTTACGTGTTGGTGGTGGTGGTGGTGGTGGAGGGGGAAGGCGACGCAGCCGTAGTCCAAGATACAGGAGGAGCCCAAGTTATGGTAGGAGGAGCTACAGTCCCCGTGGTAGATCTCCACCTCCACGCCGTCGCAGTCCCTCACCTCGTGGAAGAAGCTACAGCAGGTCACCAGCTCCTTATCGTGCTCGTGAGGAACTGCCTTATGCAAACGGAAATGGTGTCAGGGAGAGACGTCGCAGCAGGAGCTGA

Protein sequence

MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDGKNGWRVELSHNSRGGGGGRGGGRGGGGGRGGSDLKCYECGEPGHFARECRLRVGGGGGGGGGRRRSRSPRYRRSPSYGRRSYSPRGRSPPPRRRSPSPRGRSYSRSPAPYRAREELPYANGNGVRERRRSRS

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo15939.1	Spo15939.1	mRNA

Homology

[Close]

BLAST of Spo15939.1 vs. NCBI nr
Match: gi|902203233|gb|KNA14497.1| (hypothetical protein SOVF_107020 [Spinacia oleracea])

HSP 1 Score: 374.0 bits (959), Expect = 1.600e-100
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 1

		  
Query: 1   MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG 60
           MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG 60

Query: 61  KNGWRVELSHNSRGGGGGRGGGRGGGGGRGGSDLKCYECGEPGHFARECRLRVGGGGGGG 120
           KNGWRVELSHNSRGGGGGRGGGRGGGGGRGGSDLKCYECGEPGHFARECRLRVGGGGGGG
Sbjct: 61  KNGWRVELSHNSRGGGGGRGGGRGGGGGRGGSDLKCYECGEPGHFARECRLRVGGGGGGG 120

Query: 121 GGRRRSRSPRYRRSPSYGRRSYSPRGRSPPPRRRSPSPRGRSYSRSPAPYRAREELPYAN 180
           GGRRRSRSPRYRRSPSYGRRSYSPRGRSPPPRRRSPSPRGRSYSRSPAPYRAREELPYAN
Sbjct: 121 GGRRRSRSPRYRRSPSYGRRSYSPRGRSPPPRRRSPSPRGRSYSRSPAPYRAREELPYAN 180

Query: 181 GNGVRERRRSRS 193
           GNGVRERRRSRS
Sbjct: 181 GNGVRERRRSRS 192

[Close]

BLAST of Spo15939.1 vs. NCBI nr
Match: gi|731362650|ref|XP_010692998.1| (PREDICTED: serine/arginine-rich splicing factor RSZ22A [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 358.2 bits (918), Expect = 8.800e-96
Identity = 189/193 (97.93%), Postives = 189/193 (97.93%), Query Frame = 1

		  
Query: 1   MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG 60
           MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG 60

Query: 61  KNGWRVELSHNSRGGGGGRGGGRGGGG-GRGGSDLKCYECGEPGHFARECRLRVGGGGGG 120
           KNGWRVELSHNSRGGGGGRGGG GGGG GRGGSDLKCYECGEPGHFARECRLRV GGGGG
Sbjct: 61  KNGWRVELSHNSRGGGGGRGGGGGGGGRGRGGSDLKCYECGEPGHFARECRLRV-GGGGG 120

Query: 121 GGGRRRSRSPRYRRSPSYGRRSYSPRGRSPPPRRRSPSPRGRSYSRSPAPYRAREELPYA 180
           GGGRRRSRSPRYRRSPSYGRRSYSPRGRSPPPRRRSPSPRGRSYSRSP PYRAREELPYA
Sbjct: 121 GGGRRRSRSPRYRRSPSYGRRSYSPRGRSPPPRRRSPSPRGRSYSRSPPPYRAREELPYA 180

Query: 181 NGNGVRERRRSRS 193
           NGNGVRERRRSRS
Sbjct: 181 NGNGVRERRRSRS 192

[Close]

BLAST of Spo15939.1 vs. NCBI nr
Match: gi|743862403|ref|XP_011031384.1| (PREDICTED: serine/arginine-rich splicing factor RSZ22A-like [Populus euphratica])

HSP 1 Score: 316.2 bits (809), Expect = 3.800e-83
Identity = 173/193 (89.64%), Postives = 178/193 (92.23%), Query Frame = 1

		  
Query: 1   MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG 60
           MSRVYVGNLDPRV+ER+LEDEFR FGVIRSVWVARRPPGYAFIDFDD RDA+DAIH LDG
Sbjct: 1   MSRVYVGNLDPRVSERDLEDEFRRFGVIRSVWVARRPPGYAFIDFDDKRDAQDAIHELDG 60

Query: 61  KNGWRVELSHNSRGGGGGRGGGRGGGGGR-GGSDLKCYECGEPGHFARECRLRVGGGGGG 120
           KNGWRVELSHNSRGGGGG GGGRGGG GR GGSDLKCYECGEPGHFARECRLRVG GGGG
Sbjct: 61  KNGWRVELSHNSRGGGGGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRLRVGSGGGG 120

Query: 121 GGGRRRSRSPRYRRSPSYGRRSYSPRGRSPPPRRRSPSPRGRSYSRSPAPYRAREELPYA 180
           G  RRRSRSPRYRRSPSYGRRSYSPRGRS  P+RRS SPRGRSYSRSP  YR REELPYA
Sbjct: 121 G--RRRSRSPRYRRSPSYGRRSYSPRGRS--PKRRSLSPRGRSYSRSP-QYRGREELPYA 180

Query: 181 NGNGVRERRRSRS 193
           NGNG+RERRRSRS
Sbjct: 181 NGNGIRERRRSRS 188

[Close]

BLAST of Spo15939.1 vs. NCBI nr
Match: gi|659132619|ref|XP_008466294.1| (PREDICTED: serine/arginine-rich splicing factor RSZ22A [Cucumis melo])

HSP 1 Score: 316.2 bits (809), Expect = 3.800e-83
Identity = 172/192 (89.58%), Postives = 178/192 (92.71%), Query Frame = 1

		  
Query: 1   MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG 60
           MSRVYVGNLDPRV+ERELEDEFRVFGVIRSVWVARRPPGYAFIDFDD RDA+DAIH LDG
Sbjct: 1   MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 60

Query: 61  KNGWRVELSHNSRGGGGGRGGGRGGGGGRGGSDLKCYECGEPGHFARECRLRVGGGGGGG 120
           KNGWRVELSHNSRGGGGGRGG  GG G  GGSDLKCYECGEPGHFARECRLR GGGGGGG
Sbjct: 61  KNGWRVELSHNSRGGGGGRGG--GGRGRSGGSDLKCYECGEPGHFARECRLR-GGGGGGG 120

Query: 121 GGRRRSRSPRYRRSPSYGRRSYSPRGRSPPPRRRSPSPRGRSYSRSPAPYRAREELPYAN 180
            GRRRSRSPRYRRSPSYGRRSYSPRGRS  PRRRS SPRGRS+SRSP PYR REELPYAN
Sbjct: 121 AGRRRSRSPRYRRSPSYGRRSYSPRGRS--PRRRSLSPRGRSFSRSP-PYRGREELPYAN 180

Query: 181 GNGVRERRRSRS 193
           GNG+++RRRSRS
Sbjct: 181 GNGIKDRRRSRS 186

[Close]

BLAST of Spo15939.1 vs. NCBI nr
Match: gi|449437054|ref|XP_004136307.1| (PREDICTED: serine/arginine-rich splicing factor RSZ22 [Cucumis sativus])

HSP 1 Score: 315.8 bits (808), Expect = 5.000e-83
Identity = 172/197 (87.31%), Postives = 179/197 (90.86%), Query Frame = 1

		  
Query: 1   MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG 60
           MSRVYVGNLDPRV+ERELEDEFRVFGVIRSVWVARRPPGYAFIDFDD RDA+DAIH LDG
Sbjct: 1   MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 60

Query: 61  KNGWRVELSHNSRGGGGGRGGGRGGGGGRGGSDLKCYECGEPGHFARECRLRVGGGGGGG 120
           KNGWRVELSHNSRGGGGGRGG  GG G  GGSDLKCYECGEPGHFARECRLR GGGGGGG
Sbjct: 61  KNGWRVELSHNSRGGGGGRGG--GGRGRSGGSDLKCYECGEPGHFARECRLRGGGGGGGG 120

Query: 121 G-----GRRRSRSPRYRRSPSYGRRSYSPRGRSPPPRRRSPSPRGRSYSRSPAPYRAREE 180
           G     GRRRSRSPRYRRSPSYGRRSYSPRGRS  PRRRS SPRGRS+SRSP PYR REE
Sbjct: 121 GGGGGAGRRRSRSPRYRRSPSYGRRSYSPRGRS--PRRRSVSPRGRSFSRSP-PYRGREE 180

Query: 181 LPYANGNGVRERRRSRS 193
           +PYANGNG+++RRRSRS
Sbjct: 181 IPYANGNGIKDRRRSRS 192

[Close]

BLAST of Spo15939.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R6R6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_107020 PE=4 SV=1)

HSP 1 Score: 374.0 bits (959), Expect = 1.100e-100
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 1

		  
Query: 1   MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG 60
           MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG 60

Query: 61  KNGWRVELSHNSRGGGGGRGGGRGGGGGRGGSDLKCYECGEPGHFARECRLRVGGGGGGG 120
           KNGWRVELSHNSRGGGGGRGGGRGGGGGRGGSDLKCYECGEPGHFARECRLRVGGGGGGG
Sbjct: 61  KNGWRVELSHNSRGGGGGRGGGRGGGGGRGGSDLKCYECGEPGHFARECRLRVGGGGGGG 120

Query: 121 GGRRRSRSPRYRRSPSYGRRSYSPRGRSPPPRRRSPSPRGRSYSRSPAPYRAREELPYAN 180
           GGRRRSRSPRYRRSPSYGRRSYSPRGRSPPPRRRSPSPRGRSYSRSPAPYRAREELPYAN
Sbjct: 121 GGRRRSRSPRYRRSPSYGRRSYSPRGRSPPPRRRSPSPRGRSYSRSPAPYRAREELPYAN 180

Query: 181 GNGVRERRRSRS 193
           GNGVRERRRSRS
Sbjct: 181 GNGVRERRRSRS 192

[Close]

BLAST of Spo15939.1 vs. UniProtKB/TrEMBL
Match: A0A0J8E8D7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g045280 PE=4 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 6.200e-96
Identity = 189/193 (97.93%), Postives = 189/193 (97.93%), Query Frame = 1

		  
Query: 1   MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG 60
           MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG 60

Query: 61  KNGWRVELSHNSRGGGGGRGGGRGGGG-GRGGSDLKCYECGEPGHFARECRLRVGGGGGG 120
           KNGWRVELSHNSRGGGGGRGGG GGGG GRGGSDLKCYECGEPGHFARECRLRV GGGGG
Sbjct: 61  KNGWRVELSHNSRGGGGGRGGGGGGGGRGRGGSDLKCYECGEPGHFARECRLRV-GGGGG 120

Query: 121 GGGRRRSRSPRYRRSPSYGRRSYSPRGRSPPPRRRSPSPRGRSYSRSPAPYRAREELPYA 180
           GGGRRRSRSPRYRRSPSYGRRSYSPRGRSPPPRRRSPSPRGRSYSRSP PYRAREELPYA
Sbjct: 121 GGGRRRSRSPRYRRSPSYGRRSYSPRGRSPPPRRRSPSPRGRSYSRSPPPYRAREELPYA 180

Query: 181 NGNGVRERRRSRS 193
           NGNGVRERRRSRS
Sbjct: 181 NGNGVRERRRSRS 192

[Close]

BLAST of Spo15939.1 vs. UniProtKB/TrEMBL
Match: A0A0A0LEI3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G881900 PE=4 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 3.500e-83
Identity = 172/197 (87.31%), Postives = 179/197 (90.86%), Query Frame = 1

		  
Query: 1   MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG 60
           MSRVYVGNLDPRV+ERELEDEFRVFGVIRSVWVARRPPGYAFIDFDD RDA+DAIH LDG
Sbjct: 1   MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDG 60

Query: 61  KNGWRVELSHNSRGGGGGRGGGRGGGGGRGGSDLKCYECGEPGHFARECRLRVGGGGGGG 120
           KNGWRVELSHNSRGGGGGRGG  GG G  GGSDLKCYECGEPGHFARECRLR GGGGGGG
Sbjct: 61  KNGWRVELSHNSRGGGGGRGG--GGRGRSGGSDLKCYECGEPGHFARECRLRGGGGGGGG 120

Query: 121 G-----GRRRSRSPRYRRSPSYGRRSYSPRGRSPPPRRRSPSPRGRSYSRSPAPYRAREE 180
           G     GRRRSRSPRYRRSPSYGRRSYSPRGRS  PRRRS SPRGRS+SRSP PYR REE
Sbjct: 121 GGGGGAGRRRSRSPRYRRSPSYGRRSYSPRGRS--PRRRSVSPRGRSFSRSP-PYRGREE 180

Query: 181 LPYANGNGVRERRRSRS 193
           +PYANGNG+++RRRSRS
Sbjct: 181 IPYANGNGIKDRRRSRS 192

[Close]

BLAST of Spo15939.1 vs. UniProtKB/TrEMBL
Match: B9N668_POPTR (Splicing factor RSZp22 family protein OS=Populus trichocarpa GN=POPTR_0006s28720g PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 3.000e-82
Identity = 171/193 (88.60%), Postives = 177/193 (91.71%), Query Frame = 1

		  
Query: 1   MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG 60
           MSRVYVGNLDPRV+ER+LEDEFR FGVIRSVWVARRPPGYAFIDFDD RDA+DAIH LDG
Sbjct: 1   MSRVYVGNLDPRVSERDLEDEFRRFGVIRSVWVARRPPGYAFIDFDDKRDAQDAIHELDG 60

Query: 61  KNGWRVELSHNSRGGGGGRGGGRGGGGGR-GGSDLKCYECGEPGHFARECRLRVGGGGGG 120
           KNGWRVELSHNSRGGGGG GGGRGGG GR GGSDLKCYECGEPGHFARECRLRV   G G
Sbjct: 61  KNGWRVELSHNSRGGGGGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRLRV---GSG 120

Query: 121 GGGRRRSRSPRYRRSPSYGRRSYSPRGRSPPPRRRSPSPRGRSYSRSPAPYRAREELPYA 180
           GGGRRRSRSPRYRRSPSYGRRSYSPRGRS  P+RRS SPRGRSYSRSP  YR REELPYA
Sbjct: 121 GGGRRRSRSPRYRRSPSYGRRSYSPRGRS--PKRRSLSPRGRSYSRSP-QYRGREELPYA 180

Query: 181 NGNGVRERRRSRS 193
           NGNG+R+RRRSRS
Sbjct: 181 NGNGIRDRRRSRS 187

[Close]

BLAST of Spo15939.1 vs. UniProtKB/TrEMBL
Match: D7T0J3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0069g00800 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 1.400e-79
Identity = 170/193 (88.08%), Postives = 172/193 (89.12%), Query Frame = 1

		  
Query: 1   MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG 60
           MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDD RDA+DAI  LDG
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDG 60

Query: 61  KNGWRVELSHNSRGGGGGRGGGRGGGGGR-GGSDLKCYECGEPGHFARECRLRVGGGGGG 120
           KNGWRVELSHNSRGGG   GGGRGGG GR GGSDLKCYECGEPGHFARECRLR      G
Sbjct: 61  KNGWRVELSHNSRGGG---GGGRGGGRGRSGGSDLKCYECGEPGHFARECRLR------G 120

Query: 121 GGGRRRSRSPRYRRSPSYGRRSYSPRGRSPPPRRRSPSPRGRSYSRSPAPYRAREELPYA 180
           G GRRRSRSPRYRRSPSYGRRSYSPRGRS  PRRRS SPRGRSYSRSP  YR REELPYA
Sbjct: 121 GSGRRRSRSPRYRRSPSYGRRSYSPRGRS--PRRRSLSPRGRSYSRSPG-YRGREELPYA 180

Query: 181 NGNGVRERRRSRS 193
           NGNG+RERRRSRS
Sbjct: 181 NGNGLRERRRSRS 181

[Close]

BLAST of Spo15939.1 vs. ExPASy Swiss-Prot
Match: RSZ22_ARATH (Serine/arginine-rich splicing factor RSZ22 OS=Arabidopsis thaliana GN=RSZ22 PE=1 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 1.800e-77
Identity = 165/206 (80.10%), Postives = 173/206 (83.98%), Query Frame = 1

		  
Query: 1   MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG 60
           MSRVYVGNLDPRVTERELEDEFR FGV+RSVWVARRPPGYAF+DF+D RDA+DAI ALDG
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDG 60

Query: 61  KNGWRVELSHN-SRGGGGGRGGGRGGG----GGRGGSDLKCYECGEPGHFARECRLRVGG 120
           KNGWRVE SHN    GGGGRGG RGGG    GGRGGSDLKCYECGE GHFARECR R   
Sbjct: 61  KNGWRVEQSHNRGERGGGGRGGDRGGGGGGRGGRGGSDLKCYECGETGHFARECRNR--- 120

Query: 121 GGGGGGGRRRSRS-----PRYRRSPSYGRRSYSPRGRS-PPPRRRSPSP---RGRSYSRS 180
              GG GRRRS+S     PRYRRSPSYGRRSYSPR RS PPPRRRSPSP   RGRSYSRS
Sbjct: 121 ---GGTGRRRSKSRSRTPPRYRRSPSYGRRSYSPRARSPPPPRRRSPSPPPARGRSYSRS 180

Query: 181 PAPYRAREELPYANGNGVRERRRSRS 193
           P PYRAREE+PYANGNG++ERRRSRS
Sbjct: 181 PPPYRAREEVPYANGNGLKERRRSRS 200

[Close]

BLAST of Spo15939.1 vs. ExPASy Swiss-Prot
Match: RZ22A_ARATH (Serine/arginine-rich splicing factor RSZ22A OS=Arabidopsis thaliana GN=RSZ22A PE=1 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 4.100e-77
Identity = 162/202 (80.20%), Postives = 175/202 (86.63%), Query Frame = 1

		  
Query: 1   MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG 60
           MSRVYVGNLDPRVTERELEDEFR FGVIRSVWVARRPPGYAF+DF+D+RDA+DAI  +DG
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDG 60

Query: 61  KNGWRVELSHNSRGGGGGRGGGRGGGG---GRGGSDLKCYECGEPGHFARECRLRVGGGG 120
           KNGWRVE SHN RGGGGGRGGGRGGG    GRGGSDLKCYECGE GHFARECR R     
Sbjct: 61  KNGWRVEQSHN-RGGGGGRGGGRGGGDGGRGRGGSDLKCYECGESGHFARECRSR----- 120

Query: 121 GGGGGRRRSRS-----PRYRRSPSY-GRRSYSPRGRS-PPPRRRSPSPRGRSYSRSPAPY 180
           GG GGRRRSRS     PRYR+SP+Y GRRSYSPR RS PPPRRRSPSPRGR+YSRSP PY
Sbjct: 121 GGSGGRRRSRSRSRSPPRYRKSPTYGGRRSYSPRARSPPPPRRRSPSPRGRNYSRSPPPY 180

Query: 181 RAREELPYANGNGVRERRRSRS 193
           RAR+E+PYANGNG+++ RRSRS
Sbjct: 181 RARDEVPYANGNGLKDVRRSRS 196

[Close]

BLAST of Spo15939.1 vs. ExPASy Swiss-Prot
Match: RZ21A_ORYSJ (Serine/arginine-rich splicing factor RSZ21A OS=Oryza sativa subsp. japonica GN=RSZ21A PE=2 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.300e-59
Identity = 140/199 (70.35%), Postives = 150/199 (75.38%), Query Frame = 1

		  
Query: 1   MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG 60
           M+RVYVGNLDPRVT RELEDEFRVFGV+RSVWVAR+PPG+AFIDFDD RDA+DAI  +DG
Sbjct: 1   MARVYVGNLDPRVTARELEDEFRVFGVLRSVWVARKPPGFAFIDFDDRRDAQDAIRDIDG 60

Query: 61  KNGWRVELSHNSRGGGGGRGGGRGGGGGRGGSDLKCYECGEPGHFARECRLRVGGGGGGG 120
           KNGWRVELS N+         GRGG    G S+ KCYECGE GHFARECRLR+G GG G 
Sbjct: 61  KNGWRVELSRNA-------SSGRGGRDRYGSSESKCYECGETGHFARECRLRIGSGGLGS 120

Query: 121 GGRR-----RSRSPRYRRSPSYGRRSYSPRGRSPPPRRRSPSP-RGRSYSRSPAPYRARE 180
           G RR     RSRSPRYRRSPSYGRRSYSP GRS  PRRRS SP R RSYSRSP   R R+
Sbjct: 121 GRRRSRSRSRSRSPRYRRSPSYGRRSYSPAGRS--PRRRSVSPARARSYSRSPQYNRGRD 180

Query: 181 ELP-YANGNGVRERRRSRS 193
           E P Y NG      RRSRS
Sbjct: 181 ESPAYDNG-----YRRSRS 185

[Close]

BLAST of Spo15939.1 vs. ExPASy Swiss-Prot
Match: RSZ21_ORYSJ (Serine/arginine-rich splicing factor RSZ21 OS=Oryza sativa subsp. japonica GN=RSZP21 PE=2 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 2.300e-59
Identity = 136/198 (68.69%), Postives = 150/198 (75.76%), Query Frame = 1

		  
Query: 1   MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG 60
           M+R+YVGNLDPRVT  ELEDEFRVFGV+RSVWVAR+PPG+AFIDFDD RDA+DA+  LDG
Sbjct: 1   MARLYVGNLDPRVTSGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDG 60

Query: 61  KNGWRVELSHNSRGGGGGRGGGRGGGGGRGGSDLKCYECGEPGHFARECRLRVGGGGGGG 120
           KNGWRVELS NS          RGG    GGS++KCYECGE GHFARECRLR+G GG G 
Sbjct: 61  KNGWRVELSRNS--------SSRGGRDRHGGSEMKCYECGETGHFARECRLRIGPGGLGS 120

Query: 121 GGRR-----RSRSPRYRRSPSYGRRSYSPRGRSPPPRRRSPSP-RGRSYSRSPAPYRARE 180
           G RR     RSRSP+YR+SP+YGRRSYSPR RS  PRRRS SP RGRSYSRSP   R R 
Sbjct: 121 GKRRSRSRSRSRSPQYRKSPTYGRRSYSPRDRS--PRRRSVSPVRGRSYSRSP---RGRG 180

Query: 181 ELPYANGNGVRERRRSRS 193
             PYA+G      RRSRS
Sbjct: 181 GSPYADGRDGGRYRRSRS 185

[Close]

BLAST of Spo15939.1 vs. ExPASy Swiss-Prot
Match: RZP23_ORYSJ (Serine/arginine-rich splicing factor RSZ23 OS=Oryza sativa subsp. japonica GN=RSZ23 PE=2 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.100e-57
Identity = 136/206 (66.02%), Postives = 146/206 (70.87%), Query Frame = 1

		  
Query: 1   MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG 60
           M+RVYVGNLDPRVT RE+EDEFRVFGV+RSVWVAR+PPG+AFIDFDD RDA+DAI  LDG
Sbjct: 1   MARVYVGNLDPRVTAREIEDEFRVFGVLRSVWVARKPPGFAFIDFDDRRDAEDAIRDLDG 60

Query: 61  KNGWRVELSHNSRGGGGGRGGGRGGGGGRGGSDLKCYECGEPGHFARECRLRVGGGGGGG 120
           KNGWRVELS  +   G GRG  R      GGSD+KCYECGEPGHFARECRLR+G GG G 
Sbjct: 61  KNGWRVELSTKA---GSGRGRDRS-----GGSDMKCYECGEPGHFARECRLRIGSGGLGS 120

Query: 121 G--------------GRRRSRSPRYRRSPSYGR--RSYSPRGRS-----PPPRRRS---- 180
           G              GR RSRSPRYRRSPSYGR  R  SP+ RS     PP R RS    
Sbjct: 121 GRRRSRSRSRSPRYRGRSRSRSPRYRRSPSYGRSPRDRSPKRRSYSRSPPPARARSYSRS 180

[Close]

BLAST of Spo15939.1 vs. TAIR (Arabidopsis)
Match: AT4G31580.1 (serine/arginine-rich 22)

HSP 1 Score: 290.0 bits (741), Expect = 1.000e-78
Identity = 165/206 (80.10%), Postives = 173/206 (83.98%), Query Frame = 1

		  
Query: 1   MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG 60
           MSRVYVGNLDPRVTERELEDEFR FGV+RSVWVARRPPGYAF+DF+D RDA+DAI ALDG
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDG 60

Query: 61  KNGWRVELSHN-SRGGGGGRGGGRGGG----GGRGGSDLKCYECGEPGHFARECRLRVGG 120
           KNGWRVE SHN    GGGGRGG RGGG    GGRGGSDLKCYECGE GHFARECR R   
Sbjct: 61  KNGWRVEQSHNRGERGGGGRGGDRGGGGGGRGGRGGSDLKCYECGETGHFARECRNR--- 120

Query: 121 GGGGGGGRRRSRS-----PRYRRSPSYGRRSYSPRGRS-PPPRRRSPSP---RGRSYSRS 180
              GG GRRRS+S     PRYRRSPSYGRRSYSPR RS PPPRRRSPSP   RGRSYSRS
Sbjct: 121 ---GGTGRRRSKSRSRTPPRYRRSPSYGRRSYSPRARSPPPPRRRSPSPPPARGRSYSRS 180

Query: 181 PAPYRAREELPYANGNGVRERRRSRS 193
           P PYRAREE+PYANGNG++ERRRSRS
Sbjct: 181 PPPYRAREEVPYANGNGLKERRRSRS 200

[Close]

BLAST of Spo15939.1 vs. TAIR (Arabidopsis)
Match: AT2G24590.1 (RNA recognition motif and CCHC-type zinc finger domains containing protein)

HSP 1 Score: 288.9 bits (738), Expect = 2.300e-78
Identity = 162/202 (80.20%), Postives = 175/202 (86.63%), Query Frame = 1

		  
Query: 1   MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG 60
           MSRVYVGNLDPRVTERELEDEFR FGVIRSVWVARRPPGYAF+DF+D+RDA+DAI  +DG
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDG 60

Query: 61  KNGWRVELSHNSRGGGGGRGGGRGGGG---GRGGSDLKCYECGEPGHFARECRLRVGGGG 120
           KNGWRVE SHN RGGGGGRGGGRGGG    GRGGSDLKCYECGE GHFARECR R     
Sbjct: 61  KNGWRVEQSHN-RGGGGGRGGGRGGGDGGRGRGGSDLKCYECGESGHFARECRSR----- 120

Query: 121 GGGGGRRRSRS-----PRYRRSPSY-GRRSYSPRGRS-PPPRRRSPSPRGRSYSRSPAPY 180
           GG GGRRRSRS     PRYR+SP+Y GRRSYSPR RS PPPRRRSPSPRGR+YSRSP PY
Sbjct: 121 GGSGGRRRSRSRSRSPPRYRKSPTYGGRRSYSPRARSPPPPRRRSPSPRGRNYSRSPPPY 180

Query: 181 RAREELPYANGNGVRERRRSRS 193
           RAR+E+PYANGNG+++ RRSRS
Sbjct: 181 RARDEVPYANGNGLKDVRRSRS 196

[Close]

BLAST of Spo15939.1 vs. TAIR (Arabidopsis)
Match: AT1G23860.1 (RS-containing zinc finger protein 21)

HSP 1 Score: 213.0 bits (541), Expect = 1.600e-55
Identity = 131/198 (66.16%), Postives = 139/198 (70.20%), Query Frame = 1

		  
Query: 1   MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDTRDAKDAIHALDG 60
           M+RVYVGNLDPRVTERELEDEF+ FGV+R+VWVARRPPGYAF++FDD RDA DAI ALD 
Sbjct: 1   MTRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDR 60

Query: 61  KNGWRVELSHNSRGGGGGRGGGRGGGGGRGGSDLKCYECGEPGHFARECRLRVGGGGGGG 120
           KNGWRVELSH  +GG GG GG RGG       D KCYECGE GHFARECR       G G
Sbjct: 61  KNGWRVELSHKDKGGRGGGGGRRGGI-----EDSKCYECGELGHFARECRR------GRG 120

Query: 121 GGRRRSRSPRYRRSPSYG--RRSYSPRGRSPPPRRRSPSP--RGRSYSRSPAPYRAR--- 180
             RRRS SPR RRSP YG  RRS SPRGR  PPRRRS +P  RGRSYSRSP PYR     
Sbjct: 121 SVRRRSPSPRRRRSPDYGYARRSISPRGRRSPPRRRSVTPPRRGRSYSRSP-PYRGSRRD 180

Query: 181 ----------EELPYANG 182
                        PYANG
Sbjct: 181 SPRRRDSPYGRRSPYANG 186

[Close]

BLAST of Spo15939.1 vs. TAIR (Arabidopsis)
Match: AT1G02840.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 75.5 bits (184), Expect = 4.000e-14
Identity = 52/106 (49.06%), Postives = 62/106 (58.49%), Query Frame = 1

		  
Query: 4   VYVGNLDPRVTERELEDEFRVFGVIRSV--WVARRPPGYAFIDFDDTRDAKDAIHALDG- 63
           VYVGNL   + ERE+ED F  +G +  +   V  RPPGYAF++FDD RDA+DAIH  DG 
Sbjct: 9   VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68

Query: 64  ---KNGWRVELSHNSR-----------GGGGGRGGGRGGGGGRGGS 93
               +  RVEL+H  R           GGG G G GRG GG RG S
Sbjct: 69  DFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPS 114

[Close]

BLAST of Spo15939.1 vs. TAIR (Arabidopsis)
Match: AT4G02430.2 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 69.3 bits (168), Expect = 2.900e-12
Identity = 50/107 (46.73%), Postives = 64/107 (59.81%), Query Frame = 1

		  
Query: 4   VYVGNLDPRVTERELEDEFRVFGVIRSV--WVARRPPGYAFIDFDDTRDAKDAIHALDG- 63
           +YVGNL   + ERE+ED F  +G +  +   +  RPPGYAF++F+D RDA DAI+  DG 
Sbjct: 9   IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68

Query: 64  ---KNGWRVEL-------SHNSRG-----GGGGRGGGRGGGGGRGGS 93
               +  RVEL       SH++RG     G GGRGGG GGG  RG S
Sbjct: 69  DFDGHHLRVELAHGGRRSSHDARGSYSGRGRGGRGGGDGGGRERGPS 115

The following BLAST results are available for this feature:

BLAST of Spo15939.1 vs. NCBI nr
BLAST of Spo15939.1 vs. UniProtKB/TrEMBL
BLAST of Spo15939.1 vs. ExPASy Swiss-Prot
BLAST of Spo15939.1 vs. TAIR (Arabidopsis)

BLAST of Spo15939.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|902203233\|gb\|KNA14497.1\|	1.6e-100	100.	hypothetical protein SOVF_1070...	[more]
gi\|731362650\|ref\|XP_010692998.1\|	8.8e-96	97.9	PREDICTED: serine/arginine-ric...	[more]
gi\|743862403\|ref\|XP_011031384.1\|	3.8e-83	89.6	PREDICTED: serine/arginine-ric...	[more]
gi\|659132619\|ref\|XP_008466294.1\|	3.8e-83	89.5	PREDICTED: serine/arginine-ric...	[more]
gi\|449437054\|ref\|XP_004136307.1\|	5.0e-83	87.3	PREDICTED: serine/arginine-ric...	[more]

BLAST of Spo15939.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
A0A0K9R6R6_SPIOL	1.1e-100	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8E8D7_BETVU	6.2e-96	97.9	Uncharacterized protein OS=Bet...	[more]
A0A0A0LEI3_CUCSA	3.5e-83	87.3	Uncharacterized protein OS=Cuc...	[more]
B9N668_POPTR	3.0e-82	88.6	Splicing factor RSZp22 family ...	[more]
D7T0J3_VITVI	1.4e-79	88.0	Putative uncharacterized prote...	[more]

BLAST of Spo15939.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
RSZ22_ARATH	1.8e-77	80.1	Serine/arginine-rich splicing ...	[more]
RZ22A_ARATH	4.1e-77	80.2	Serine/arginine-rich splicing ...	[more]
RZ21A_ORYSJ	1.3e-59	70.3	Serine/arginine-rich splicing ...	[more]
RSZ21_ORYSJ	2.3e-59	68.6	Serine/arginine-rich splicing ...	[more]
RZP23_ORYSJ	2.1e-57	66.0	Serine/arginine-rich splicing ...	[more]

BLAST of Spo15939.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
AT4G31580.1	1.0e-78	80.1	serine/arginine-rich 22	[more]
AT2G24590.1	2.3e-78	80.2	RNA recognition motif and CCHC...	[more]
AT1G23860.1	1.6e-55	66.1	RS-containing zinc finger prot...	[more]
AT1G02840.1	4.0e-14	49.0	RNA-binding (RRM/RBD/RNP motif...	[more]
AT4G02430.2	2.9e-12	46.7	RNA-binding (RRM/RBD/RNP motif...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 4..61 score: 2.1
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 3..69 score: 9.6
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 2..73 score: 16
IPR001878	Zinc finger, CCHC-type	GENE3D	4.10.60.10		coord: 93..111 score: 7.
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 95..110 score: 6.
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 95..111 score: 7.
IPR001878	Zinc finger, CCHC-type	PROFILE	PS50158	ZF_CCHC	coord: 95..110 score: 10
IPR001878	Zinc finger, CCHC-type	unknown	SSF57756	Retrovirus zinc finger-like domains	coord: 77..115 score: 6.6
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	3.30.70.330		coord: 2..78 score: 2.3
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 3..89 score: 8.06
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 136..192 score: 2.0E-14coord: 2..84 score: 2.0
None	No IPR available	PANTHER	PTHR23147:SF1	SUBFAMILY NOT NAMED	coord: 2..84 score: 2.0E-14coord: 136..192 score: 2.0

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045595	regulation of cell differentiation
biological_process	GO:0010182	sugar mediated signaling pathway
biological_process	GO:0051567	histone H3-K9 methylation
biological_process	GO:0009909	regulation of flower development
biological_process	GO:0050826	response to freezing
biological_process	GO:0010162	seed dormancy process
biological_process	GO:0009845	seed germination
biological_process	GO:0009069	serine family amino acid metabolic process
biological_process	GO:0007062	sister chromatid cohesion
biological_process	GO:0006099	tricarboxylic acid cycle
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0010228	vegetative to reproductive phase transition of meristem
biological_process	GO:0006536	glutamate metabolic process
biological_process	GO:0044205	'de novo' UMP biosynthetic process
biological_process	GO:0006526	arginine biosynthetic process
biological_process	GO:0042545	cell wall modification
biological_process	GO:0009664	plant-type cell wall organization
biological_process	GO:0007017	microtubule-based process
biological_process	GO:0010564	regulation of cell cycle process
biological_process	GO:0010072	primary shoot apical meristem specification
biological_process	GO:0009073	aromatic amino acid family biosynthetic process
biological_process	GO:0010498	proteasomal protein catabolic process
biological_process	GO:0008152	metabolic process
biological_process	GO:0007049	cell cycle
biological_process	GO:0006342	chromatin silencing
biological_process	GO:0006261	DNA-dependent DNA replication
biological_process	GO:0032776	DNA methylation on cytosine
biological_process	GO:0031047	gene silencing by RNA
biological_process	GO:0034968	histone lysine methylation
biological_process	GO:0022414	reproductive process
biological_process	GO:0006406	mRNA export from nucleus
biological_process	GO:0048608	reproductive structure development
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0015976	carbon utilization
biological_process	GO:0051301	cell division
biological_process	GO:0048825	cotyledon development
biological_process	GO:0009880	embryonic pattern specification
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0019915	lipid storage
biological_process	GO:0051258	protein polymerization
biological_process	GO:0030154	cell differentiation
biological_process	GO:0009409	response to cold
biological_process	GO:0009932	cell tip growth
biological_process	GO:0050790	regulation of catalytic activity
biological_process	GO:0042176	regulation of protein catabolic process
biological_process	GO:0009266	response to temperature stimulus
biological_process	GO:0046686	response to cadmium ion
biological_process	GO:0006084	acetyl-CoA metabolic process
biological_process	GO:0043481	anthocyanin accumulation in tissues in response to UV light
biological_process	GO:0016132	brassinosteroid biosynthetic process
biological_process	GO:0071555	cell wall organization
biological_process	GO:0016192	vesicle-mediated transport
biological_process	GO:0007010	cytoskeleton organization
biological_process	GO:0009740	gibberellic acid mediated signaling pathway
biological_process	GO:0006096	glycolytic process
biological_process	GO:0007030	Golgi organization
biological_process	GO:0006972	hyperosmotic response
biological_process	GO:0007018	microtubule-based movement
biological_process	GO:0009825	multidimensional cell growth
biological_process	GO:0048767	root hair elongation
biological_process	GO:0052541	plant-type cell wall cellulose metabolic process
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0006522	alanine metabolic process
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0009965	leaf morphogenesis
biological_process	GO:0006782	protoporphyrinogen IX biosynthetic process
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0009263	deoxyribonucleotide biosynthetic process
biological_process	GO:0009202	deoxyribonucleoside triphosphate biosynthetic process
biological_process	GO:0006421	asparaginyl-tRNA aminoacylation
biological_process	GO:0009165	nucleotide biosynthetic process
biological_process	GO:0006531	aspartate metabolic process
biological_process	GO:0009186	deoxyribonucleoside diphosphate metabolic process
biological_process	GO:0006833	water transport
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0009414	response to water deprivation
biological_process	GO:0016126	sterol biosynthetic process
biological_process	GO:0052546	cell wall pectin metabolic process
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0016070	RNA metabolic process
biological_process	GO:0009791	post-embryonic development
biological_process	GO:0000271	polysaccharide biosynthetic process
biological_process	GO:0000478	endonucleolytic cleavage involved in rRNA processing
biological_process	GO:0009926	auxin polar transport
biological_process	GO:0001510	RNA methylation
biological_process	GO:0033036	macromolecule localization
biological_process	GO:0006268	DNA unwinding involved in DNA replication
biological_process	GO:0006270	DNA replication initiation
biological_process	GO:0009308	amine metabolic process
biological_process	GO:0006626	protein targeting to mitochondrion
biological_process	GO:0051604	protein maturation
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0006606	protein import into nucleus
biological_process	GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0000466	maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0006306	DNA methylation
biological_process	GO:0009561	megagametogenesis
biological_process	GO:0007389	pattern specification process
biological_process	GO:0000911	cytokinesis by cell plate formation
biological_process	GO:0006913	nucleocytoplasmic transport
biological_process	GO:0006230	TMP biosynthetic process
biological_process	GO:0008283	cell proliferation
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0016310	phosphorylation
biological_process	GO:0006260	DNA replication
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0071702	organic substance transport
biological_process	GO:0042542	response to hydrogen peroxide
biological_process	GO:0009644	response to high light intensity
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0009408	response to heat
biological_process	GO:0034976	response to endoplasmic reticulum stress
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0008356	asymmetric cell division
biological_process	GO:0008361	regulation of cell size
biological_process	GO:0010389	regulation of G2/M transition of mitotic cell cycle
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008033	tRNA processing
biological_process	GO:0009220	pyrimidine ribonucleotide biosynthetic process
biological_process	GO:0016579	protein deubiquitination
biological_process	GO:0000338	protein deneddylation
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0009640	photomorphogenesis
biological_process	GO:0016571	histone methylation
biological_process	GO:0006448	regulation of translational elongation
biological_process	GO:0010075	regulation of meristem growth
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006396	RNA processing
biological_process	GO:0010015	root morphogenesis
biological_process	GO:0009987	cellular process
biological_process	GO:0006414	translational elongation
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0006457	protein folding
biological_process	GO:0006164	purine nucleotide biosynthetic process
biological_process	GO:0006275	regulation of DNA replication
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0031429	box H/ACA snoRNP complex
cellular_component	GO:0005840	ribosome
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0030117	membrane coat
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005777	peroxisome
cellular_component	GO:0044444	cytoplasmic part
cellular_component	GO:0005657	replication fork
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0000502	proteasome complex
cellular_component	GO:0042555	MCM complex
cellular_component	GO:0046809	replication compartment
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0030687	preribosome, large subunit precursor
cellular_component	GO:0016020	membrane
cellular_component	GO:0044424	intracellular part
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:0016592	mediator complex
cellular_component	GO:1990904	ribonucleoprotein complex
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005951	carbamoyl-phosphate synthase complex
cellular_component	GO:0005829	cytosol
cellular_component	GO:0048046	apoplast
cellular_component	GO:0005853	eukaryotic translation elongation factor 1 complex
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005773	vacuole
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0005971	ribonucleoside-diphosphate reductase complex
cellular_component	GO:0005874	microtubule
cellular_component	GO:0005654	nucleoplasm
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005744	mitochondrial inner membrane presequence translocase complex
cellular_component	GO:0005618	cell wall
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0032040	small-subunit processome
cellular_component	GO:0016459	myosin complex
cellular_component	GO:0080008	Cul4-RING E3 ubiquitin ligase complex
molecular_function	GO:0004748	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor
molecular_function	GO:0015450	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
molecular_function	GO:0003688	DNA replication origin binding
molecular_function	GO:0004088	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003678	DNA helicase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0030234	enzyme regulator activity
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0042802	identical protein binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0048038	quinone binding
molecular_function	GO:0008131	primary amine oxidase activity
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0051082	unfolded protein binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0043021	ribonucleoprotein complex binding
molecular_function	GO:0003746	translation elongation factor activity
molecular_function	GO:0016779	nucleotidyltransferase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0004797	thymidine kinase activity
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds
molecular_function	GO:0005488	binding
molecular_function	GO:0005200	structural constituent of cytoskeleton
molecular_function	GO:0008536	Ran GTPase binding
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0008422	beta-glucosidase activity
molecular_function	GO:0004816	asparagine-tRNA ligase activity
molecular_function	GO:0008483	transaminase activity
molecular_function	GO:0030170	pyridoxal phosphate binding
molecular_function	GO:0042286	glutamate-1-semialdehyde 2,1-aminomutase activity
molecular_function	GO:0008097	5S rRNA binding
molecular_function	GO:0009982	pseudouridine synthase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004612	phosphoenolpyruvate carboxykinase (ATP) activity
molecular_function	GO:0016905	myosin heavy chain kinase activity
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0030515	snoRNA binding
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0036459	thiol-dependent ubiquitinyl hydrolase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo04667	0.82	Barchart \| Table
Spo14875	0.79	Barchart \| Table
Spo05589	0.79	Barchart \| Table
Spo18094	0.78	Barchart \| Table
Spo10599	0.77	Barchart \| Table
Spo25635	0.77	Barchart \| Table
Spo20647	0.77	Barchart \| Table
Spo13279	0.77	Barchart \| Table
Spo22394	0.77	Barchart \| Table
Spo11850	0.76	Barchart \| Table
Spo03527	0.76	Barchart \| Table
Spo23220	0.76	Barchart \| Table
Spo23038	0.76	Barchart \| Table
Spo19236	0.76	Barchart \| Table
Spo21922	0.76	Barchart \| Table
Spo25176	0.75	Barchart \| Table
Spo02380	0.75	Barchart \| Table
Spo12191	0.75	Barchart \| Table
Spo04242	0.75	Barchart \| Table
Spo01086	0.74	Barchart \| Table
Spo20997	0.74	Barchart \| Table
Spo23241	0.74	Barchart \| Table
Spo13481	0.74	Barchart \| Table
Spo08691	0.74	Barchart \| Table
Spo06318	0.74	Barchart \| Table
Spo18901	0.74	Barchart \| Table
Spo21655	0.74	Barchart \| Table
Spo03473	0.73	Barchart \| Table
Spo23498	0.73	Barchart \| Table
Spo06588	0.73	Barchart \| Table
Spo01999	0.73	Barchart \| Table
Spo18647	0.73	Barchart \| Table
Spo07920	0.73	Barchart \| Table
Spo21764	0.72	Barchart \| Table
Spo18532	0.72	Barchart \| Table
Spo24902	0.72	Barchart \| Table
Spo04454	0.72	Barchart \| Table
Spo02838	0.72	Barchart \| Table
Spo19970	0.72	Barchart \| Table
Spo12311	0.72	Barchart \| Table
Spo05064	0.72	Barchart \| Table
Spo15604	0.71	Barchart \| Table
Spo10597	0.71	Barchart \| Table
Spo25669	0.71	Barchart \| Table
Spo11943	0.71	Barchart \| Table
Spo23681	0.71	Barchart \| Table
Spo08816	0.71	Barchart \| Table
Spo18719	0.71	Barchart \| Table
Spo14380	0.71	Barchart \| Table
Spo07145	0.71	Barchart \| Table
Spo07668	0.71	Barchart \| Table
Spo10390	0.71	Barchart \| Table
Spo05908	0.70	Barchart \| Table
Spo01092	0.70	Barchart \| Table
Spo02397	0.70	Barchart \| Table
Spo02942	0.70	Barchart \| Table
Spo00525	0.70	Barchart \| Table
Spo07054	0.70	Barchart \| Table
Spo07223	0.70	Barchart \| Table
Spo10147	0.70	Barchart \| Table
Spo11288	0.70	Barchart \| Table
Spo16627	0.70	Barchart \| Table
Spo16693	0.70	Barchart \| Table
Spo19200	0.70	Barchart \| Table
Spo24703	0.70	Barchart \| Table
Spo26884	0.70	Barchart \| Table
Spo05783	0.69	Barchart \| Table
Spo25306	0.69	Barchart \| Table
Spo15132	0.69	Barchart \| Table
Spo08082	0.69	Barchart \| Table
Spo15751	0.69	Barchart \| Table
Spo15819	0.69	Barchart \| Table
Spo02353	0.69	Barchart \| Table
Spo12304	0.69	Barchart \| Table
Spo25954	0.69	Barchart \| Table
Spo17271	0.69	Barchart \| Table
Spo27223	0.69	Barchart \| Table
Spo18449	0.69	Barchart \| Table
Spo07432	0.69	Barchart \| Table
Spo07402	0.69	Barchart \| Table
Spo12265	0.69	Barchart \| Table
Spo22401	0.69	Barchart \| Table
Spo05461	0.69	Barchart \| Table
Spo04381	0.69	Barchart \| Table
Spo11592	0.69	Barchart \| Table
Spo12681	0.69	Barchart \| Table
Spo05694	0.68	Barchart \| Table
Spo12516	0.68	Barchart \| Table
Spo21375	0.68	Barchart \| Table
Spo04208	0.68	Barchart \| Table
Spo08961	0.68	Barchart \| Table
Spo19207	0.68	Barchart \| Table
Spo05721	0.68	Barchart \| Table
Spo04219	0.68	Barchart \| Table
Spo13412	0.68	Barchart \| Table
Spo06136	0.68	Barchart \| Table
Spo02218	0.68	Barchart \| Table
Spo17976	0.68	Barchart \| Table
Spo07795	0.68	Barchart \| Table
Spo03131	0.68	Barchart \| Table
Spo04311	0.67	Barchart \| Table
Spo09563	0.67	Barchart \| Table
Spo14692	0.67	Barchart \| Table
Spo00689	0.67	Barchart \| Table
Spo06904	0.67	Barchart \| Table
Spo28152	0.67	Barchart \| Table
Spo05849	0.67	Barchart \| Table
Spo21754	0.67	Barchart \| Table
Spo11026	0.67	Barchart \| Table
Spo22410	0.67	Barchart \| Table
Spo03979	0.67	Barchart \| Table
Spo23622	0.67	Barchart \| Table
Spo23815	0.67	Barchart \| Table
Spo24573	0.67	Barchart \| Table
Spo25289	0.67	Barchart \| Table
Spo01474	0.67	Barchart \| Table
Spo12048	0.67	Barchart \| Table
Spo09833	0.66	Barchart \| Table
Spo08488	0.66	Barchart \| Table
Spo15007	0.66	Barchart \| Table
Spo23292	0.66	Barchart \| Table
Spo18246	0.66	Barchart \| Table
Spo03046	0.66	Barchart \| Table
Spo12064	0.66	Barchart \| Table
Spo17662	0.66	Barchart \| Table
Spo14447	0.66	Barchart \| Table
Spo13621	0.65	Barchart \| Table
Spo15961	0.65	Barchart \| Table
Spo25181	0.65	Barchart \| Table
Spo21280	0.65	Barchart \| Table
Spo18505	0.65	Barchart \| Table
Spo03200	0.65	Barchart \| Table