Spo15940 (gene)

Overview
NameSpo15940
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr1 : 20917530 .. 20918397 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTGGACATCGTTCAACTATGTTAAGCTGGGTGCTGTCTGCAACCTCAAATCTTGGATTTGGTTAAGTTCTTTTCTTTCTGTGTTAATTAGTATTTGTTATGCTGCGTATAGAGGCAATTTGTTTTAAACTTAATGATTGGCTAGATACTGTTAACAATATGCTTTTCAGTACATTGCAAAATAGCTGGCTAAGTTTTGTACTGTTTTTCTTGTGTCGAGGTTGTCTTCATGGTTCTGCTACATTGGTAGTGAGCCTCTTCTGCTTCTGCGTCATTGGTTTTCTGCTTCTACACTCCTCTGTGGTTTTGTTGCTCGCTGCCTTCCCCAGGATCTTCAATTTTGAATTATTGTGGATCCCGGCTGGCTTGGTCACTTGGAAAAGTCCGCTTAGTTCACTCAGCAGCATGGTGCATCTCCCTCCCCTGTGGTTTTGTTCCTTGTGGCCTTCCCTAGGATCTTCAATTTGAATTGTTGTGGGTCTCGACTGCCTTCGTCACTTCGAAAAGCTTACTTGATTGAGTCTCTCCAGCATGATGCATCTCACCCATAAGTTGACTTTTTTTTTTAATTACTATTTGTTATTGTGGATCCTGGCTGCCTTCATCACTTGGGAAAGCATACTTGATTGAGTCTCGCGACCTTGATGCATCTCACCCATACGTTGACTTCTTTTTTGATATTTGTCTTGATAGAGAAGCTGCTTGAATCTCTTCTGTCAGGTACAAGCATTTGTAAAAGTTGAGGTTCTTCAGGACCTAATTGTTTCAGTTATTAATTGGGTTCCCATGAGTAGGTACTTTAAAGTACGGCAACCAAGTTGTGGAGCAAGTGGCAACTTCAGGTCCTGTTGCTTCTCTAGGTTAA

mRNA sequence

ATGCTTGGACATCGTTCAACTATGTTAAGCTGGGTGCTGTCTGCAACCTCAAATCTTGGATTTGGTTGTCTTCATGGTTCTGCTACATTGGTAGTGAGCCTCTTCTGCTTCTGCGTCATTGGTTTTCTGCTTCTACACTCCTCTGTGGTTTTGTTGCTCGCTGCCTTCCCCAGGATCTTCAATTTTGAATTATTGTGGATCCCGGCTGGCTTGGTCACTTGGAAAAAGAAGCTGCTTGAATCTCTTCTGTCAGGTACTTTAAAGTACGGCAACCAAGTTGTGGAGCAAGTGGCAACTTCAGGTCCTGTTGCTTCTCTAGGTTAA

Coding sequence (CDS)

ATGCTTGGACATCGTTCAACTATGTTAAGCTGGGTGCTGTCTGCAACCTCAAATCTTGGATTTGGTTGTCTTCATGGTTCTGCTACATTGGTAGTGAGCCTCTTCTGCTTCTGCGTCATTGGTTTTCTGCTTCTACACTCCTCTGTGGTTTTGTTGCTCGCTGCCTTCCCCAGGATCTTCAATTTTGAATTATTGTGGATCCCGGCTGGCTTGGTCACTTGGAAAAAGAAGCTGCTTGAATCTCTTCTGTCAGGTACTTTAAAGTACGGCAACCAAGTTGTGGAGCAAGTGGCAACTTCAGGTCCTGTTGCTTCTCTAGGTTAA

Protein sequence

MLGHRSTMLSWVLSATSNLGFGCLHGSATLVVSLFCFCVIGFLLLHSSVVLLLAAFPRIFNFELLWIPAGLVTWKKKLLESLLSGTLKYGNQVVEQVATSGPVASLG
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo15940.1Spo15940.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo15940.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo15940.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo15940.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo15940.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePROFILEPS51257PROKAR_LIPOPROTEINcoord: 1..23
score:

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
biological_process GO:0006364 rRNA processing
cellular_component GO:0005634 nucleus
molecular_function GO:0005524 ATP binding
molecular_function GO:0008026 ATP-dependent helicase activity
molecular_function GO:0003723 RNA binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo079210.69Barchart | Table
Spo179600.67Barchart | Table
Spo132380.65Barchart | Table