Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATAGCGTCATAAACTAAGATTTGATATTTTTATGCGAAATAGAGTTGGCATTTTCAACCTGACATGATTATAATATTTTGCAATTATCCTACTTTTTATACATTTAGTGAACCACACTTCAAATCAATAGAAAACTAACAAGCTTACACCAATCCTTTACCTGTTTTGCCTGCCTATCTAAAACTTTGTCATGTAGGCTATGTATGACTAATAATTTTCTATCAAAATATTTAAGGTTTTTATCACACATTTTCACTTAAATTTTCAATAATAAAACCCCGTAAAAATAACTCATACTCCGTAAATGATAGATTGATAAAAATGATTATTAAAAAAAATCCATATTGAAGAACCAGAACCGACTCAACCTACCCGTTTGAGAGCTCAACCAACCATGCTTACTTAAGACCTTATATATTCCAACATTGGTTACAAGGCAAGATTAGAGGAACTAAAACAAAGGTAAATCCTTAAATTTAAGCAACTTTTTTTTTTATAATTCCTAATATAAGTAACTAAACAAGCACATACTCCGTAACAAACTAATAATCAAATTTCTGCTCCACAATTTATAATTATATTGTCCTTATATAATTATATGCTCATTTGCACCCACCAAGACATGGTAAGCAAGTTAAGACAGACCGTGTCCACTACGCTTTACAATTGATTCGTTTGCAATCCACAACCATACAAAATTTACAAATCATAAATCAACCCCCGTAAGTAAGTGCGCACCATTAGACATTAGTCCTAAATATATGCCTTCTTTTGTACATCTATATATTCTCTCTCCTCTTCCTCTATTTTTAACCAAACATTTTATAAAACTCCCAACATTAAATCCTCTGTTTTCCCCCCTTAATCTGCATAATTTTCATCCTAATTACAATTATTTGCATTCTAAATTTGTTATCAAAATGGGCAGCGACGGAAATGATAGTCTATCATTGGACTCAATTAGGAAGACTTTAATTGGGCTTGAAGATACCATCGTTTACAGCTTGATTGAAAGGTCCAAACTACCCCTCAATTCCCTTGCTTATCAGTCTTCTCCTTTTCCTGGGGGGTTTCATGGCTCCTTGATGGAGTTTCTTGTTAAGGGTACTGAATCTGTTCAAGCCCAGGTTAGTTTTTTTTTTTATTTCTTCTTGTTTTAATTCTCTCTTTTTTTGTTTTGTAAGTTTTCGAGTTAATAGTAGTCACGTTGATAGCGTAGTTTTAACGTGACAACTAAATCCGGACATAGTTATCGATGGATTTGTTAGGAATTCTTCCTGGGTTTTTGTTGAGCTTAGGAGAAAGTGATTATGGTGGGACCTACATTGGATAATGATCAAGCAACGGTTTAATTGTATTTTAATTCAAAAGTGATTATGGTTTTTAGCAATGGAACAAATCTTTGTCTTTGTTTATGCGTATTGCCATGAACTTTGTGGGGAAAAAAGTGGGTTTTCACATGCCTTTTTGTTTCGTTTTGGAAAGGAAATAAGACGGACAACCTAATAACCGTTTAGGATGTTAACATGTGTTTTTATAGAATTTGTATTATTGATCATCATTAGTGCAAGTAATGCTTATGTATATAGATTGATTAGTTTATGTAGAAATGGTAATTTGGTTTATTAGGCTCATGTCATGAAATGCATATGCATGCTTGTAAAGGTTTGGACTATTTTAGGCTCCTTAGCTTCGACTTACCTCCTCTACGATGCTTTAGTGGTCGGGTCGTGGGTGGGCGAGGATTTCACCTTTTTGAAATCAGTCATTGACATAATAAGTTTTAGAAAGACTTTGTAGTTTGACCAAATTGTACAGAACAATAGAACATTCCTGATTACTTGATTAGTAGCTGGTTTTGGTAGGTGGAGAAAGAAGCAACTACCAAACAACAATTAGGAAAATAATTTACTAATTTAATTATGTGCTGGGATAGCCCAATTGTAATGCCACAATTTATGCTACTCCATCATCTTGTACGCATAAGATGCATCGAGATAACTTTTAACAAATTTTGATTAACTTTTATATTATAAGAAAAACATTCCATTGATAAACATTTTAATGGGTTAGTTGATTACTTTTGTACATTATTAGTGATTTTAAAAGAATATTTTTTATTAAAATAAAAAACTGATCACTAAAAATAGATAATGTTTCCACATGTCAAGTTAACATTTAAACATTTTGATTTTACTTTTACTTTGATATAAAATGTTTATTGTACACCACCTTTAAATAAGACTTTGTGTTTACAACTAAGCTATAGTTACCAATTGAAGTTGGCATGAGTGTTTAAGGGTCTCTTGCTCCGTAACCAAGGTCACGGGTTCGAGTCTTAGATATGGAAAAAACTTTAAGTGGGAGGGATACTGCCCATCGAGATATCCATTCAAACTCCCGAGAGAGATTAGTCCACTCGCCCAAGACGGTGGGAACTCCTCGTAGTAAAAAAAAAATTAAAAAAAAAGAAAACGAAGCTTTAGTTGGAACAATGTAGCATGGTAATCGATGAAATATTTGCTTCCTGTTCTGTTATATTCAACCATTTCTTTATGGAGTCTTCTTAAGAACGTATATTGCTATGTGTTTCAGGGTGGAAGATATCAAAGTCCTGAAGAAGTTCCATTCTTCCCTGATAATTTACCACCTCCATTCGTACACCGCCCTGTAAATTGTTGGCAGGTAATTTACCTTTACATTTTCCTAGGAAACTTACTTGTATTTCTCCCCAAATCCTTACTGAAAATTTAGAAGACTCATTGGGTTTTATGATTGCTGCATTGTGTGTATTTGCAGGGTTTGCCTCCTGCTGCTGCATCTGTGAATGTAAGTAAGAACATTTGGGACTTCTATGTTAACCAATTTCTACCTCTACTGGCTGCTAAGGGTGATGATGGAAATTACGCGTTAAGTGTAGCTTCTGATCTTGCTTGCTTACAGGTTCGTAAGTCTTTTCACATCAAAAAAAAAAAAAAACAAATTTCTGAACAACTTATTTTAGTTCTAAATTGAACTTTGAATTAGAACTTGGTTGATAAATGATAAGGGATTGATTGAAGATATTATCTTTCAGGTGATATCAAGGAGAATACATTTCGGTAAGTATGTTGCTGAAGTAAAGTTCAGAAACGAAACTGAAGCATATACTGCTGCAATTCGCGCAAAGGTTGGTTTTTTTTATCTGATTCTGATCAAGTATATATTGTATAGTTTGGATCAAGTTCGTTTTCTCTAACTTAATTGTACTCCTAACTTGTGAAATTCAGGACAAAAATACTCTGATGAACCTATTGACAGATAGTAAAGTGGAAGCCATGGTGATGCAAAGAGTTGCGAAGAAAGCCACAGTTTTCGGACAGGAAGTTACCCTGAATGCAACTAGCAATAGCAACAACTATAAGGTTGATCCTTCGTTGGTGTCTCGTCTTTACAATGAATGGGTGATTCCTTTGACGAAAGATATTGAAGTTGAATACCTTCTCCGGCGTCTAGATTGATCTGATTTTCGAGTCTGTATTTTAGCTTCATGCAACTCAGAATGCATGATTCACTTGTACTGATGAAAGTTTAACACTCTCAAAAGCAATCTTTCATTTGTTATTAGATTCATAAAGGATGTGTCTTCATTGAATTAGTATATAAATATAAATGCTCGTATATAGATTGTTCTATCTTTGAAAATTAATGCTAGATGTTTTCCTGCACGCTTCCAATCTACACCATTATTAATTGCCATTTTAAAACAAATAAATAGCTAGCTCACTTGGGGCATAAGAACAAAACAAGTGTAGTTCATATGCATAATAAATGGCACATTTGTTAATAAACCCCCCA ATAGCGTCATAAACTAAGATTTGATATTTTTATGCGAAATAGAGTTGGCATTTTCAACCTGACATGATTATAATATTTTGCAATTATCCTACTTTTTATACATTTAGTGAACCACACTTCAAATCAATAGAAAACTAACAAGCTTACACCAATCCTTTACCTGTTTTGCCTGCCTATCTAAAACTTTGTCATGTAGGCTATGTATGACTAATAATTTTCTATCAAAATATTTAAGGTTTTTATCACACATTTTCACTTAAATTTTCAATAATAAAACCCCGTAAAAATAACTCATACTCCGTAAATGATAGATTGATAAAAATGATTATTAAAAAAAATCCATATTGAAGAACCAGAACCGACTCAACCTACCCGTTTGAGAGCTCAACCAACCATGCTTACTTAAGACCTTATATATTCCAACATTGGTTACAAGGCAAGATTAGAGGAACTAAAACAAAGGTAAATCCTTAAATTTAAGCAACTTTTTTTTTTATAATTCCTAATATAAGTAACTAAACAAGCACATACTCCGTAACAAACTAATAATCAAATTTCTGCTCCACAATTTATAATTATATTGTCCTTATATAATTATATGCTCATTTGCACCCACCAAGACATGGTAAGCAAGTTAAGACAGACCGTGTCCACTACGCTTTACAATTGATTCGTTTGCAATCCACAACCATACAAAATTTACAAATCATAAATCAACCCCCGTAAGTAAGTGCGCACCATTAGACATTAGTCCTAAATATATGCCTTCTTTTGTACATCTATATATTCTCTCTCCTCTTCCTCTATTTTTAACCAAACATTTTATAAAACTCCCAACATTAAATCCTCTGTTTTCCCCCCTTAATCTGCATAATTTTCATCCTAATTACAATTATTTGCATTCTAAATTTGTTATCAAAATGGGCAGCGACGGAAATGATAGTCTATCATTGGACTCAATTAGGAAGACTTTAATTGGGCTTGAAGATACCATCGTTTACAGCTTGATTGAAAGGTCCAAACTACCCCTCAATTCCCTTGCTTATCAGTCTTCTCCTTTTCCTGGGGGGTTTCATGGCTCCTTGATGGAGTTTCTTGTTAAGGGTACTGAATCTGTTCAAGCCCAGGGTGGAAGATATCAAAGTCCTGAAGAAGTTCCATTCTTCCCTGATAATTTACCACCTCCATTCGTACACCGCCCTGTAAATTGTTGGCAGGGTTTGCCTCCTGCTGCTGCATCTGTGAATGTAAGTAAGAACATTTGGGACTTCTATGTTAACCAATTTCTACCTCTACTGGCTGCTAAGGGTGATGATGGAAATTACGCGTTAAGTGTAGCTTCTGATCTTGCTTGCTTACAGGTGATATCAAGGAGAATACATTTCGGTAAGTATGTTGCTGAAGTAAAGTTCAGAAACGAAACTGAAGCATATACTGCTGCAATTCGCGCAAAGGACAAAAATACTCTGATGAACCTATTGACAGATAGTAAAGTGGAAGCCATGGTGATGCAAAGAGTTGCGAAGAAAGCCACAGTTTTCGGACAGGAAGTTACCCTGAATGCAACTAGCAATAGCAACAACTATAAGGTTGATCCTTCGTTGGTGTCTCGTCTTTACAATGAATGGGTGATTCCTTTGACGAAAGATATTGAAGTTGAATACCTTCTCCGGCGTCTAGATTGATCTGATTTTCGAGTCTGTATTTTAGCTTCATGCAACTCAGAATGCATGATTCACTTGTACTGATGAAAGTTTAACACTCTCAAAAGCAATCTTTCATTTGTTATTAGATTCATAAAGGATGTGTCTTCATTGAATTAGTATATAAATATAAATGCTCGTATATAGATTGTTCTATCTTTGAAAATTAATGCTAGATGTTTTCCTGCACGCTTCCAATCTACACCATTATTAATTGCCATTTTAAAACAAATAAATAGCTAGCTCACTTGGGGCATAAGAACAAAACAAGTGTAGTTCATATGCATAATAAATGGCACATTTGTTAATAAACCCCCCA ATGCCTTCTTTTGTACATCTATATATTCTCTCTCCTCTTCCTCTATTTTTAACCAAACATTTTATAAAACTCCCAACATTAAATCCTCTGTTTTCCCCCCTTAATCTGCATAATTTTCATCCTAATTACAATTATTTGCATTCTAAATTTGTTATCAAAATGGGCAGCGACGGAAATGATAGTCTATCATTGGACTCAATTAGGAAGACTTTAATTGGGCTTGAAGATACCATCGTTTACAGCTTGATTGAAAGGTCCAAACTACCCCTCAATTCCCTTGCTTATCAGTCTTCTCCTTTTCCTGGGGGGTTTCATGGCTCCTTGATGGAGTTTCTTGTTAAGGGTACTGAATCTGTTCAAGCCCAGGGTGGAAGATATCAAAGTCCTGAAGAAGTTCCATTCTTCCCTGATAATTTACCACCTCCATTCGTACACCGCCCTGTAAATTGTTGGCAGGGTTTGCCTCCTGCTGCTGCATCTGTGAATGTAAGTAAGAACATTTGGGACTTCTATGTTAACCAATTTCTACCTCTACTGGCTGCTAAGGGTGATGATGGAAATTACGCGTTAAGTGTAGCTTCTGATCTTGCTTGCTTACAGGTGATATCAAGGAGAATACATTTCGGTAAGTATGTTGCTGAAGTAAAGTTCAGAAACGAAACTGAAGCATATACTGCTGCAATTCGCGCAAAGGACAAAAATACTCTGATGAACCTATTGACAGATAGTAAAGTGGAAGCCATGGTGATGCAAAGAGTTGCGAAGAAAGCCACAGTTTTCGGACAGGAAGTTACCCTGAATGCAACTAGCAATAGCAACAACTATAAGGTTGATCCTTCGTTGGTGTCTCGTCTTTACAATGAATGGGTGATTCCTTTGACGAAAGATATTGAAGTTGAATACCTTCTCCGGCGTCTAGATTGA MPSFVHLYILSPLPLFLTKHFIKLPTLNPLFSPLNLHNFHPNYNYLHSKFVIKMGSDGNDSLSLDSIRKTLIGLEDTIVYSLIERSKLPLNSLAYQSSPFPGGFHGSLMEFLVKGTESVQAQGGRYQSPEEVPFFPDNLPPPFVHRPVNCWQGLPPAAASVNVSKNIWDFYVNQFLPLLAAKGDDGNYALSVASDLACLQVISRRIHFGKYVAEVKFRNETEAYTAAIRAKDKNTLMNLLTDSKVEAMVMQRVAKKATVFGQEVTLNATSNSNNYKVDPSLVSRLYNEWVIPLTKDIEVEYLLRRLD Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo15944.1 vs. NCBI nr
Match: gi|902150651|gb|KNA05442.1| (hypothetical protein SOVF_190380 [Spinacia oleracea]) HSP 1 Score: 503.4 bits (1295), Expect = 2.700e-139 Identity = 251/252 (99.60%), Postives = 252/252 (100.00%), Query Frame = 1
BLAST of Spo15944.1 vs. NCBI nr
Match: gi|870867227|gb|KMT18120.1| (hypothetical protein BVRB_2g031500 isoform A [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 404.8 bits (1039), Expect = 1.300e-109 Identity = 205/256 (80.08%), Postives = 229/256 (89.45%), Query Frame = 1
BLAST of Spo15944.1 vs. NCBI nr
Match: gi|731317046|ref|XP_010667531.1| (PREDICTED: chorismate mutase 2-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 399.4 bits (1025), Expect = 5.500e-108 Identity = 202/254 (79.53%), Postives = 227/254 (89.37%), Query Frame = 1
BLAST of Spo15944.1 vs. NCBI nr
Match: gi|870867228|gb|KMT18121.1| (hypothetical protein BVRB_2g031500 isoform B [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 399.4 bits (1025), Expect = 5.500e-108 Identity = 202/254 (79.53%), Postives = 227/254 (89.37%), Query Frame = 1
BLAST of Spo15944.1 vs. NCBI nr
Match: gi|659104218|ref|XP_008452851.1| (PREDICTED: chorismate mutase 2 isoform X1 [Cucumis melo]) HSP 1 Score: 295.4 bits (755), Expect = 1.100e-76 Identity = 151/254 (59.45%), Postives = 190/254 (74.80%), Query Frame = 1
BLAST of Spo15944.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QDU8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_190380 PE=4 SV=1) HSP 1 Score: 503.4 bits (1295), Expect = 1.900e-139 Identity = 251/252 (99.60%), Postives = 252/252 (100.00%), Query Frame = 1
BLAST of Spo15944.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CWM8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g031500 PE=4 SV=1) HSP 1 Score: 404.8 bits (1039), Expect = 9.200e-110 Identity = 205/256 (80.08%), Postives = 229/256 (89.45%), Query Frame = 1
BLAST of Spo15944.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FQQ9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g031500 PE=4 SV=1) HSP 1 Score: 399.4 bits (1025), Expect = 3.900e-108 Identity = 202/254 (79.53%), Postives = 227/254 (89.37%), Query Frame = 1
BLAST of Spo15944.1 vs. UniProtKB/TrEMBL
Match: A0A0A0L0D3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G651960 PE=4 SV=1) HSP 1 Score: 291.6 bits (745), Expect = 1.100e-75 Identity = 149/254 (58.66%), Postives = 190/254 (74.80%), Query Frame = 1
BLAST of Spo15944.1 vs. UniProtKB/TrEMBL
Match: A0A067KBB3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07087 PE=4 SV=1) HSP 1 Score: 289.7 bits (740), Expect = 4.300e-75 Identity = 150/254 (59.06%), Postives = 187/254 (73.62%), Query Frame = 1
BLAST of Spo15944.1 vs. ExPASy Swiss-Prot
Match: CM2_ARATH (Chorismate mutase 2 OS=Arabidopsis thaliana GN=CM2 PE=1 SV=1) HSP 1 Score: 263.1 bits (671), Expect = 3.900e-69 Identity = 144/258 (55.81%), Postives = 177/258 (68.60%), Query Frame = 1
BLAST of Spo15944.1 vs. ExPASy Swiss-Prot
Match: CM1_ARATH (Chorismate mutase 1, chloroplastic OS=Arabidopsis thaliana GN=CM1 PE=1 SV=3) HSP 1 Score: 235.7 bits (600), Expect = 6.600e-61 Identity = 120/261 (45.98%), Postives = 175/261 (67.05%), Query Frame = 1
BLAST of Spo15944.1 vs. ExPASy Swiss-Prot
Match: CM3_ARATH (Chorismate mutase 3, chloroplastic OS=Arabidopsis thaliana GN=CM3 PE=1 SV=1) HSP 1 Score: 230.7 bits (587), Expect = 2.100e-59 Identity = 118/254 (46.46%), Postives = 168/254 (66.14%), Query Frame = 1
BLAST of Spo15944.1 vs. ExPASy Swiss-Prot
Match: CHMU_YEAST (Chorismate mutase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ARO7 PE=1 SV=1) HSP 1 Score: 177.9 bits (450), Expect = 1.600e-43 Identity = 99/252 (39.29%), Postives = 157/252 (62.30%), Query Frame = 1
BLAST of Spo15944.1 vs. ExPASy Swiss-Prot
Match: CHMU_SCHPO (Probable chorismate mutase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC16E8.04c PE=3 SV=1) HSP 1 Score: 162.9 bits (411), Expect = 5.500e-39 Identity = 94/254 (37.01%), Postives = 148/254 (58.27%), Query Frame = 1
BLAST of Spo15944.1 vs. TAIR (Arabidopsis)
Match: AT5G10870.1 (chorismate mutase 2) HSP 1 Score: 263.1 bits (671), Expect = 2.200e-70 Identity = 144/258 (55.81%), Postives = 177/258 (68.60%), Query Frame = 1
BLAST of Spo15944.1 vs. TAIR (Arabidopsis)
Match: AT3G29200.1 (chorismate mutase 1) HSP 1 Score: 235.7 bits (600), Expect = 3.700e-62 Identity = 120/261 (45.98%), Postives = 175/261 (67.05%), Query Frame = 1
BLAST of Spo15944.1 vs. TAIR (Arabidopsis)
Match: AT1G69370.1 (chorismate mutase 3) HSP 1 Score: 230.7 bits (587), Expect = 1.200e-60 Identity = 118/254 (46.46%), Postives = 168/254 (66.14%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo15944.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo15944.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo15944.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo15944.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 3
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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