Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGAACACCGACATCACTGCATCAACAAAGCCCGAATACACGGTAATCGATCGGAACCCACTTTTCACCAAAGTCGTCGGCAATTTCAGCTCCCTCGATTACCTCCGTTTTGTCACTATAACCGGCGTTTCTGTCACCGTCGGCTACTTATCCGGTAATCCCTCTTCCTTTATCCTCATTTTATCAAATACCCATTTCGCAATTTCCTCTCTTTTATTTTAATTTTATTTTATCTGGGTTTTTTGGTGATTTAGGGATTAAGCCTGGGATTAAAGGTCCTTCAATGGTGACGGGCGGGCTAATCGGGGTTCTGGGAGGGTTCATGTATGCTTACCAGAACTCTGCTGGCAGACTCATGGGTTTCTTTCCTAATGATGATGAGGTAGTTAAGTACAAGAAGAAGCTTAATCAGTAA ATGAACACCGACATCACTGCATCAACAAAGCCCGAATACACGGTAATCGATCGGAACCCACTTTTCACCAAAGTCGTCGGCAATTTCAGCTCCCTCGATTACCTCCGTTTTGTCACTATAACCGGCGTTTCTGTCACCGTCGGCTACTTATCCGGGATTAAGCCTGGGATTAAAGGTCCTTCAATGGTGACGGGCGGGCTAATCGGGGTTCTGGGAGGGTTCATGTATGCTTACCAGAACTCTGCTGGCAGACTCATGGGTTTCTTTCCTAATGATGATGAGGTAGTTAAGTACAAGAAGAAGCTTAATCAGTAA ATGAACACCGACATCACTGCATCAACAAAGCCCGAATACACGGTAATCGATCGGAACCCACTTTTCACCAAAGTCGTCGGCAATTTCAGCTCCCTCGATTACCTCCGTTTTGTCACTATAACCGGCGTTTCTGTCACCGTCGGCTACTTATCCGGGATTAAGCCTGGGATTAAAGGTCCTTCAATGGTGACGGGCGGGCTAATCGGGGTTCTGGGAGGGTTCATGTATGCTTACCAGAACTCTGCTGGCAGACTCATGGGTTTCTTTCCTAATGATGATGAGGTAGTTAAGTACAAGAAGAAGCTTAATCAGTAA MNTDITASTKPEYTVIDRNPLFTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGPSMVTGGLIGVLGGFMYAYQNSAGRLMGFFPNDDEVVKYKKKLNQ Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo16005.1 vs. NCBI nr
Match: gi|902212875|gb|KNA17110.1| (hypothetical protein SOVF_083060 [Spinacia oleracea]) HSP 1 Score: 209.5 bits (532), Expect = 2.700e-51 Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1
BLAST of Spo16005.1 vs. NCBI nr
Match: gi|902225342|gb|KNA20036.1| (hypothetical protein SOVF_056130 isoform A [Spinacia oleracea]) HSP 1 Score: 201.8 bits (512), Expect = 5.700e-49 Identity = 99/104 (95.19%), Postives = 102/104 (98.08%), Query Frame = 1
BLAST of Spo16005.1 vs. NCBI nr
Match: gi|731329987|ref|XP_010675885.1| (PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 198.7 bits (504), Expect = 4.900e-48 Identity = 96/104 (92.31%), Postives = 102/104 (98.08%), Query Frame = 1
BLAST of Spo16005.1 vs. NCBI nr
Match: gi|351720975|ref|NP_001237706.1| (uncharacterized protein LOC100306111 [Glycine max]) HSP 1 Score: 189.9 bits (481), Expect = 2.300e-45 Identity = 92/101 (91.09%), Postives = 97/101 (96.04%), Query Frame = 1
BLAST of Spo16005.1 vs. NCBI nr
Match: gi|1009107319|ref|XP_015879124.1| (PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Ziziphus jujuba]) HSP 1 Score: 189.9 bits (481), Expect = 2.300e-45 Identity = 92/100 (92.00%), Postives = 97/100 (97.00%), Query Frame = 1
BLAST of Spo16005.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RCB4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_083060 PE=4 SV=1) HSP 1 Score: 209.5 bits (532), Expect = 1.900e-51 Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1
BLAST of Spo16005.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RKJ6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_056130 PE=4 SV=1) HSP 1 Score: 201.8 bits (512), Expect = 4.000e-49 Identity = 99/104 (95.19%), Postives = 102/104 (98.08%), Query Frame = 1
BLAST of Spo16005.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CLI3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g089980 PE=4 SV=1) HSP 1 Score: 198.7 bits (504), Expect = 3.400e-48 Identity = 96/104 (92.31%), Postives = 102/104 (98.08%), Query Frame = 1
BLAST of Spo16005.1 vs. UniProtKB/TrEMBL
Match: C6SY14_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G011900 PE=2 SV=1) HSP 1 Score: 189.9 bits (481), Expect = 1.600e-45 Identity = 92/101 (91.09%), Postives = 97/101 (96.04%), Query Frame = 1
BLAST of Spo16005.1 vs. UniProtKB/TrEMBL
Match: A0A0B2S936_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_009944 PE=4 SV=1) HSP 1 Score: 189.9 bits (481), Expect = 1.600e-45 Identity = 92/101 (91.09%), Postives = 97/101 (96.04%), Query Frame = 1
BLAST of Spo16005.1 vs. TAIR (Arabidopsis)
Match: AT4G16450.1 (unknown protein) HSP 1 Score: 175.6 bits (444), Expect = 1.600e-44 Identity = 84/101 (83.17%), Postives = 92/101 (91.09%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo16005.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo16005.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo16005.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo16005.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
|