Spo16033 (gene)

Overview
NameSpo16033
Typegene
OrganismSpinacia oleracea (Spinach)
Description60S ribosomal protein L37a-2
Locationchr3 : 4090726 .. 4095950 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTACTTTCTCTCCTCCTCTCTCTTCGATTCAATAATCATGTAATAAATTAGTTTGATTCTTTGTTGCTCAAAATGTCAAATGATTTGTACTGTGTTTTTGATTTGATGTGGGGTTTTGTATTGCCATATTCATGCTGATTGTGAGCTTAATTTTTGGCTTTGGGGTTATAAATTAGATTGATTCTTTATTGCTCGGAATGTCAAATGATTGGTACTTTGTTTTTGATTTGGTTTGGGGTTTGTATTGCTATGTTCATGCTGATTATGAGCTTAATTTTGGCTTTGGGGTTATAAATTAGTTTGAGTCCTTTGTTGCTCGGAATGTGAAATGACTGGTATTGTGTTTTTGATTTGGTGTGGGGTTTTGTATTGCTATGTTCAGGCTGATCGTGAGCTTAATTTTTGGCTTTGGGGTGACAAATTATTTGATTCTTTGTTGCTCTGAATGTCAAATGACTGTTACTGTGTTTTTTAATTTGATGTGGGGTTTTGTATTGCCATGTTCATGCTGATTGTGAGCTTAATTTTTGGCTTTGGGGTTGAAATCGAATTTTTTTAGGGTTTATGCAACTGAACTTTGGAATCTGTGGAGGGTTGTTGTCTCCATGTTTGAGATTCATGATTATGGAGTCTTTTTTTTATAAGATTTTTTTTAATATATTGAGCCTATACGATGTTATCTTATTGGCATGATAATATTATCATCAGTTCATCACGCCCTATTATAGAAAAGTCTATGTTGGTATTAATTATGGGTGTGTAGATTGAGAAAGTGTTTTAGGGTTTATGCTCGGATAATGTTGTTTAGGTTGAAATAAGCCCTTGATTGAACCAAACTGAATAGTGAGTGAGTTGCAACTTTTACATAGTTTTTTTGTTGTTATTGATGCCATTGGTTTGTTGTACAATTTTGGGTGAGCTGAGTTGAGTTAATAATGCTCATTAAAGTTCTGTAGATTTTTTATGTTGGCTACTTTTAACTTTGAATGTTGTTGTTGATGCATACAGGCCAAGAGAACCAAGAAGGTTGGTATTGTCGGGAAATACGGTGAGTTCTGTTGTGATGATGTTAAATTTGCATAGCATAATGTCATTTGATTAGAATTGAGTCTTTGACATGAGTGAGGAAAACAAGAAATCATATCTGGCAATTCTTGATTATTATGCATTTGATATATTTCTGTCATAGAACAGATTCAAATTGACAATGAGTAGTTAGTTCAAGACTTTCCTGTTTAATTGTTCCTGTTTGATTATTTTGAATTAGGAATGAGTTATTATCACAATTAATTAATATGATTGTATTGTTTAGGTACCCGGTATGGTGCCAGTCTGCGTAAGCAGATTAAGAAGATGGAAGTCAGTCAACACAGCAAGTACTTTTGCGAGTTCTGCGGAAAGGTAAAGCTCCATTCTTTAATCAATATCTATGTATGGTCTGTGAATTTATCAACCTAACTTTTGATGTCTGATTGCAAAAACACTATGATGCATTGCAGTACGCCGTGAAGAGACAGGCTGTTGGTATCTGGGGATGCAAGGACTGCGGGAAGGTCAAGGCTGGTGGTGCTTACACTTTGAAGTAAGGGGATCTCCTCAGAAATTTCTGCTAATTATACCTAACTTCATTATTTTTATTCTCTACTTATTTGTTTTCTATATTAATAATGTTAATTTTTGCTAATTATACATAATTTCATCGTTTTTATTTCTTTTACTTATTTGTTTTCTATTTTTTGAACAGCACCGCCAGTGCAGTGACCGTGAGAAGTACAATCAGGAGGCTCAGGGAGCAGACTGAGAGTTAGATCTTTCACTAGTTGCTTATCATTTGAAAACAATTAGAAAATTGGGTGTTTGTTTGAAAATACTTCAATTTTCTGAGTTTTGGATATTACATTTTGTACTAGAATTCGTAATTTGTTAAGGATTCGTTTTAAGAATTAGATCAATGCTTCTCCTTTTATTTTGTTATTGTGAGGGATCCTGATATCAGTAGATATTTGAGGTTCAACAATATGAAAGCGATTGTTCTTGATGTTTTGCTGATCTTTGTTGATCTTTTGGAAAACATATGGGATTGGGTTGGATTTGTTGATGAGTTTGGATATCACTATGTTTTTGTTCTGGTTGGTGAGTTTGATTTTTGTTCTAGTATGTTCCCAGATAGTCAATTCAGTTGTTGCAGAGAAGTAGGGGTTGGTTTGTTATTTGCTACTAGACCTGTCCAAACAGGTCATGGGGTTGGGTCCGGGTTGGGTCATTTCGGGTCTCATGACATGATCAGGTTGGGTTCTGTTGGGTCAATCTATCACGTAGGTACAGCCGTACAGGTTGGGTTGGTTCTCGGTCGTGTCATGTCGGGTTTTTTTCCATTTCGGGTGCAAGTTGAGTTTGGGTTGAGTCATGTTCTGGTTGGGTTCAATTTCGGGTTTGAATCATATATAGTCAGGTTTGAATGGGGTTTGTAGCATTTAATCTCCAGTTTTGGGTCATGTTTGGATCGGATAATATTCGAGTCGGTTAAAATTTAGGCCGAGTTCATTATCGCCCACGGGTTAAGATCGAGTTAATAACTGATTTGATCATCTCAAATATTCAAGCGTAAAATACTTACTCCACAGGTGAGTAAATCCTGTTATGTGGTAAAAATCGGTTTTAGGTCATTATTGGGTTCGGATCATTGTTCGTTCGGGGTCTTAAAAAACTTACTCCACAGGTCGAGTAAATCGTGTTGTGGTAAAAATCGGGTTAAGGTCATTAATGGGTTCGGATCATTGTTCGTTCGGGGTCAGTTCGGTTATCGGTCATCGGTCGGGTATCGGATTTTTGTCATACAACATCGTTATCAGCTTTTTCAGGTCGGGTACAGGTCGCTTTCGGGTTACCTGTTTACCCAAAATTTCGGGTCATGGTCGGTTACGGATTCGGTCGGTTCAGGTCGGATTTTCGGATCCGGTCGGTTTTTAACAACTCTAAGCTCGGCTAGTGACTCCATCTCACTCAAACCAAGTTGTATGAACATGAGCATGAATACTGAATACGTGATAGTCTTTTCACTATCCAATGTTTGTCATTACTGCAGGTAACCAAAGTTGGTGTGTTATTTGCAAAGTGATGGTTTCTGAACTATCTGTATCACTATACTACTTTAGTATAGTTATATGTCACTAGGATCATTTTGTCTACTTTGAACTGAAACAATACTTTTAATTGCTTACCTTAATCAGTACTCCCTCCGTCCCGGAATACTCGACCCGGTTTGACCGGCACAGAGTTTAAGGGACTTGAATTGACTTATCTTAATTTAATAGGTAGTAGTTGATAGTGGGTATTATTTTAATGTAGTTAGTGAGAAATGTGTAAAGGGGTGGGGTTGGGGGAAAGTAGGGGTTGAATTTTTAATTATTTTTTGTATGGAGTAGGGGGTAGGTGGGTTAATAGGGGTGGAGTGAGAAATAATATAATATTGTTAGAATATTTCCATTTTTAGAAACAGGTCAAGTATTAAGAGACGGACCGATAAGAAAAACAGGTCCAGTATTCCGGGACGGAGGGAGTATATAAAATGGCATTGCAATTTGTAATTGAACTTCCGCAATGCAAGTTAAGTTAAATATACACTGACATGGCATTGCAATTTGCACCATGCACAGTCACGATCCAAGCCCACATTCCCTCGTTCTGTCTGAATTAGTTTCACGTGCCCTCGTTTTTTGTTGTGTCGGCTCGGGCTCGTCGTGCCTTTGTGGTGCTTTTTCTATAAATATGCGGCTCGAACACGGTCCGCGACACACGACTTCGTGCCCAAACACGGTCCACGACACACGACTTTGTGCCCATGCTGTTTCAACTCCCGTGTCGTGCGTATGGGCGGCCTAACCCAGTGCCAAACTTTTGACATTGAGTTTTTTTACGTTACCCCCCAACGTTTCTTTGATTTTTACGTCGTACCCATGCTTACGAAATCGTCCATGCTATACTCATGTACTTGTGAAATACGACCAACCTTAAATGAAAACACATGAATTTCTTACTAAGGCTCCGTTATATTGGACTTATTTTGACTGAACTTATATTATCTGAACTTCACTAAATTTATCTGCACTTATTTTATCTGAAAAGAAACTTATTTATGTGTGAAAATGTATAAATGATGCTGTGTATACACTAAATATCAACGACATCGAATCTCGTCTAAATTATTGTTATTCTATCATTTTCTAATAAAAATAAATAAAATACAAACGACACTCAATACTCAATAGTCGGCAGGTGTATACTTCTATATTTTTCACGAATGATGATCATTGATCATTGATCATTTGATAACATCCTAATTTCCATGATTCCATCTATCCTTTTCTGTAAACAAAAACAAAACCAAAAAGTTATGCCTTTTCCTTGTTTATCTGCTACAAGACGAAAACAAACGCCCAAAAGTGTCAGAAAAATATTCAAAGGTACGTGAGCCATGACGCTTTACGTTATTGTCATATGCTGAATTATGGGAATCCTGTGCCAAATTGTACACCCACACGGCCACAAAGTCACAAACCCACAAGTTGTTCTTCGCGAAATTCAACTGGATCACGTTTCTTTCTGTGATGCATTTCATCAAACAGTTAGTGTGCACCCGAATTATTGGATTACTCATTTACTCTATATAATGAAAATGATAAGAACCCTCTGCTGCGTCGCATTTCCCATGATTTAAATTGATATATTGAGTTACTAATGAAATTAAGAAAGAACATTCAAATAGATTTCTTGTTTCTATATAGAAAAAGTTGATCAGTATCTGGGTTTTTTTTTCTCCCTTTCATGTCATAAAAATCCCACCTTTCAAGTGGGTTTTCTTCAATTTTCACGTAAGTTTGTCTTATTTGGTTTCAACCTTTCTGGGTTTGGCTTAATTTTTTATAATTTTTGCGTATACCCTTTTCATTAATTTATCCAATAACTTGTTTTTAGTGATTAACTACTTTTAAGTGTTGACAATGCTGAGCTTTTGTTGCAGGAGGTTAGACAGTTTTGGGTGCCACCAGAAATGAGATAAAACTGCCCTTCACTTGACCAACTGTCAGTAGTAATATGATATTCTTCACTGTTTTATAAGAAAATGGCATTGCAATTTGAGTATTGAAACTATTGATGCTGTTAATCTGATGAGTAAGTATGCGTATGTTAATGCAGAGACTGTTGAGCAAAAGAAAGGCTGA

mRNA sequence

ATGGTACTTTCTCTCCTCCTCTCTCTTCGATTCAATAATCATGCCAAGAGAACCAAGAAGGTTGGTATTGTCGGGAAATACGGTACCCGGTATGGTGCCAGTCTGCGTAAGCAGATTAAGAAGATGGAAGTCAGTCAACACAGCAAGTACTTTTGCGAGTTCTGCGGAAAGTACGCCGTGAAGAGACAGGCTGTTGGTATCTGGGGATGCAAGGACTGCGGGAAGGTCAAGGCTGGTGGTGCTTACACTTTGAACACCGCCAGTGCAGTGACCGTGAGAAGTACAATCAGGAGGCTCAGGGAGCAGACTGAGAAGACTGTTGAGCAAAAGAAAGGCTGA

Coding sequence (CDS)

ATGGTACTTTCTCTCCTCCTCTCTCTTCGATTCAATAATCATGCCAAGAGAACCAAGAAGGTTGGTATTGTCGGGAAATACGGTACCCGGTATGGTGCCAGTCTGCGTAAGCAGATTAAGAAGATGGAAGTCAGTCAACACAGCAAGTACTTTTGCGAGTTCTGCGGAAAGTACGCCGTGAAGAGACAGGCTGTTGGTATCTGGGGATGCAAGGACTGCGGGAAGGTCAAGGCTGGTGGTGCTTACACTTTGAACACCGCCAGTGCAGTGACCGTGAGAAGTACAATCAGGAGGCTCAGGGAGCAGACTGAGAAGACTGTTGAGCAAAAGAAAGGCTGA

Protein sequence

MVLSLLLSLRFNNHAKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRQAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTEKTVEQKKG
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo16033.1Spo16033.1mRNA


Homology
[Close]
BLAST of Spo16033.1 vs. NCBI nr
Match: gi|848866574|ref|XP_012833952.1| (PREDICTED: 60S ribosomal protein L37a-like [Erythranthe guttata])

HSP 1 Score: 182.6 bits (462), Expect = 3.900e-43
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 

		  

Query: 15  AKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRQAVGIWGCKDCG 74
           AKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRQAVGIWGCKDCG
Sbjct: 2   AKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRQAVGIWGCKDCG 61

Query: 75  KVKAGGAYTLNTASAVTVRSTIRRLREQTE 105
           KVKAGGAYTLNTASAVTVRSTIRRLREQTE
Sbjct: 62  KVKAGGAYTLNTASAVTVRSTIRRLREQTE 91
[Close]
BLAST of Spo16033.1 vs. NCBI nr
Match: gi|823151915|ref|XP_012475788.1| (PREDICTED: 60S ribosomal protein L37a isoform X1 [Gossypium raimondii])

HSP 1 Score: 181.0 bits (458), Expect = 1.100e-42
Identity = 89/97 (91.75%), Postives = 91/97 (93.81%), Query Frame = 1 

		  

Query: 8   SLRFNNHAKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRQAVGI 67
           S  + N  KRTKK GIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKR+AVGI
Sbjct: 18  SHHWGNRTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGI 77

Query: 68  WGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 105
           WGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE
Sbjct: 78  WGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 114
[Close]
BLAST of Spo16033.1 vs. NCBI nr
Match: gi|297742195|emb|CBI33982.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 181.0 bits (458), Expect = 1.100e-42
Identity = 89/95 (93.68%), Postives = 90/95 (94.74%), Query Frame = 1 

		  

Query: 10  RFNNHAKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRQAVGIWG 69
           RF    KRTKK GIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKR+AVGIWG
Sbjct: 4   RFRGCTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWG 63

Query: 70  CKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 105
           CKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE
Sbjct: 64  CKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 98
[Close]
BLAST of Spo16033.1 vs. NCBI nr
Match: gi|747043785|ref|XP_011085665.1| (PREDICTED: 60S ribosomal protein L37a [Sesamum indicum])

HSP 1 Score: 181.0 bits (458), Expect = 1.100e-42
Identity = 89/90 (98.89%), Postives = 90/90 (100.00%), Query Frame = 1 

		  

Query: 15  AKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRQAVGIWGCKDCG 74
           AKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKR+AVGIWGCKDCG
Sbjct: 2   AKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCG 61

Query: 75  KVKAGGAYTLNTASAVTVRSTIRRLREQTE 105
           KVKAGGAYTLNTASAVTVRSTIRRLREQTE
Sbjct: 62  KVKAGGAYTLNTASAVTVRSTIRRLREQTE 91
[Close]
BLAST of Spo16033.1 vs. NCBI nr
Match: gi|604343407|gb|EYU42327.1| (hypothetical protein MIMGU_mgv1a0171311mg, partial [Erythranthe guttata])

HSP 1 Score: 181.0 bits (458), Expect = 1.100e-42
Identity = 89/90 (98.89%), Postives = 90/90 (100.00%), Query Frame = 1 

		  

Query: 15  AKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRQAVGIWGCKDCG 74
           AKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKR+AVGIWGCKDCG
Sbjct: 1   AKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCG 60

Query: 75  KVKAGGAYTLNTASAVTVRSTIRRLREQTE 105
           KVKAGGAYTLNTASAVTVRSTIRRLREQTE
Sbjct: 61  KVKAGGAYTLNTASAVTVRSTIRRLREQTE 90
[Close]
BLAST of Spo16033.1 vs. UniProtKB/TrEMBL
Match: A0A022RJG1_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a017136mg PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 2.700e-43
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 

		  

Query: 15  AKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRQAVGIWGCKDCG 74
           AKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRQAVGIWGCKDCG
Sbjct: 2   AKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRQAVGIWGCKDCG 61

Query: 75  KVKAGGAYTLNTASAVTVRSTIRRLREQTE 105
           KVKAGGAYTLNTASAVTVRSTIRRLREQTE
Sbjct: 62  KVKAGGAYTLNTASAVTVRSTIRRLREQTE 91
[Close]
BLAST of Spo16033.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S0Q1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_007820 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 2.700e-43
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 

		  

Query: 15  AKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRQAVGIWGCKDCG 74
           AKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRQAVGIWGCKDCG
Sbjct: 2   AKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRQAVGIWGCKDCG 61

Query: 75  KVKAGGAYTLNTASAVTVRSTIRRLREQTE 105
           KVKAGGAYTLNTASAVTVRSTIRRLREQTE
Sbjct: 62  KVKAGGAYTLNTASAVTVRSTIRRLREQTE 91
[Close]
BLAST of Spo16033.1 vs. UniProtKB/TrEMBL
Match: A0A0D2PEL3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G190800 PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 7.900e-43
Identity = 89/97 (91.75%), Postives = 91/97 (93.81%), Query Frame = 1 

		  

Query: 8   SLRFNNHAKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRQAVGI 67
           S  + N  KRTKK GIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKR+AVGI
Sbjct: 18  SHHWGNRTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGI 77

Query: 68  WGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 105
           WGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE
Sbjct: 78  WGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 114
[Close]
BLAST of Spo16033.1 vs. UniProtKB/TrEMBL
Match: A0A022RPB9_ERYGU (Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a0171311mg PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 7.900e-43
Identity = 89/90 (98.89%), Postives = 90/90 (100.00%), Query Frame = 1 

		  

Query: 15  AKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRQAVGIWGCKDCG 74
           AKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKR+AVGIWGCKDCG
Sbjct: 1   AKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCG 60

Query: 75  KVKAGGAYTLNTASAVTVRSTIRRLREQTE 105
           KVKAGGAYTLNTASAVTVRSTIRRLREQTE
Sbjct: 61  KVKAGGAYTLNTASAVTVRSTIRRLREQTE 90
[Close]
BLAST of Spo16033.1 vs. UniProtKB/TrEMBL
Match: D7TTK2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0012g00100 PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 7.900e-43
Identity = 89/95 (93.68%), Postives = 90/95 (94.74%), Query Frame = 1 

		  

Query: 10  RFNNHAKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRQAVGIWG 69
           RF    KRTKK GIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKR+AVGIWG
Sbjct: 4   RFRGCTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWG 63

Query: 70  CKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 105
           CKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE
Sbjct: 64  CKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 98
[Close]
BLAST of Spo16033.1 vs. ExPASy Swiss-Prot
Match: RL371_ORYSJ (60S ribosomal protein L37a-1 OS=Oryza sativa subsp. japonica GN=Os01g0679700 PE=1 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 3.000e-43
Identity = 85/89 (95.51%), Postives = 88/89 (98.88%), Query Frame = 1 

		  

Query: 16  KRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRQAVGIWGCKDCGK 75
           KRTKK GIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK+AVKR+AVGIWGCKDCGK
Sbjct: 3   KRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGK 62

Query: 76  VKAGGAYTLNTASAVTVRSTIRRLREQTE 105
           VKAGGAYT+NTASAVTVRSTIRRLREQTE
Sbjct: 63  VKAGGAYTMNTASAVTVRSTIRRLREQTE 91
[Close]
BLAST of Spo16033.1 vs. ExPASy Swiss-Prot
Match: RL372_ORYSJ (60S ribosomal protein L37a-2 OS=Oryza sativa subsp. japonica GN=Os05g0557000 PE=1 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 3.000e-43
Identity = 85/89 (95.51%), Postives = 88/89 (98.88%), Query Frame = 1 

		  

Query: 16  KRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRQAVGIWGCKDCGK 75
           KRTKK GIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK+AVKR+AVGIWGCKDCGK
Sbjct: 3   KRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGK 62

Query: 76  VKAGGAYTLNTASAVTVRSTIRRLREQTE 105
           VKAGGAYT+NTASAVTVRSTIRRLREQTE
Sbjct: 63  VKAGGAYTMNTASAVTVRSTIRRLREQTE 91
[Close]
BLAST of Spo16033.1 vs. ExPASy Swiss-Prot
Match: R37A2_ARATH (60S ribosomal protein L37a-2 OS=Arabidopsis thaliana GN=RPL37AC PE=3 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 3.000e-43
Identity = 85/90 (94.44%), Postives = 88/90 (97.78%), Query Frame = 1 

		  

Query: 15  AKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRQAVGIWGCKDCG 74
           AKRTKKVGIVGKYGTRYGAS+RKQIKKMEVSQHSKYFCEFCGKY VKR+AVGIWGCKDCG
Sbjct: 2   AKRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDCG 61

Query: 75  KVKAGGAYTLNTASAVTVRSTIRRLREQTE 105
           KVKAGGAYT+NTASAVTVRSTIRRLREQ E
Sbjct: 62  KVKAGGAYTMNTASAVTVRSTIRRLREQIE 91
[Close]
BLAST of Spo16033.1 vs. ExPASy Swiss-Prot
Match: RL37A_GOSHI (60S ribosomal protein L37a OS=Gossypium hirsutum GN=RPL37A PE=3 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 5.100e-43
Identity = 86/89 (96.63%), Postives = 87/89 (97.75%), Query Frame = 1 

		  

Query: 16  KRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRQAVGIWGCKDCGK 75
           KRTKK GIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKR+AVGIWGCK CGK
Sbjct: 3   KRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKACGK 62

Query: 76  VKAGGAYTLNTASAVTVRSTIRRLREQTE 105
           VKAGGAYTLNTASAVTVRSTIRRLREQTE
Sbjct: 63  VKAGGAYTLNTASAVTVRSTIRRLREQTE 91
[Close]
BLAST of Spo16033.1 vs. ExPASy Swiss-Prot
Match: RL37A_PSEMZ (60S ribosomal protein L37a OS=Pseudotsuga menziesii GN=RPL37A PE=3 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 1.900e-42
Identity = 84/89 (94.38%), Postives = 87/89 (97.75%), Query Frame = 1 

		  

Query: 16  KRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRQAVGIWGCKDCGK 75
           KRTKK GIVGKYGTRYGASLRKQIKKMEVSQHSK+FCEFCGK+AVKR+AVGIWGCKDCGK
Sbjct: 3   KRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKFAVKRKAVGIWGCKDCGK 62

Query: 76  VKAGGAYTLNTASAVTVRSTIRRLREQTE 105
           VKAGGAYTLNT SAVTVRSTIRRLREQTE
Sbjct: 63  VKAGGAYTLNTPSAVTVRSTIRRLREQTE 91
[Close]
BLAST of Spo16033.1 vs. TAIR (Arabidopsis)
Match: AT3G60245.1 (Zinc-binding ribosomal protein family protein)

HSP 1 Score: 175.6 bits (444), Expect = 1.700e-44
Identity = 85/90 (94.44%), Postives = 88/90 (97.78%), Query Frame = 1 

		  

Query: 15  AKRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRQAVGIWGCKDCG 74
           AKRTKKVGIVGKYGTRYGAS+RKQIKKMEVSQHSKYFCEFCGKY VKR+AVGIWGCKDCG
Sbjct: 2   AKRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDCG 61

Query: 75  KVKAGGAYTLNTASAVTVRSTIRRLREQTE 105
           KVKAGGAYT+NTASAVTVRSTIRRLREQ E
Sbjct: 62  KVKAGGAYTMNTASAVTVRSTIRRLREQIE 91
[Close]
BLAST of Spo16033.1 vs. TAIR (Arabidopsis)
Match: AT3G10950.1 (Zinc-binding ribosomal protein family protein)

HSP 1 Score: 170.2 bits (430), Expect = 7.000e-43
Identity = 82/89 (92.13%), Postives = 86/89 (96.63%), Query Frame = 1 

		  

Query: 16  KRTKKVGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRQAVGIWGCKDCGK 75
           KRTKK  IVGKYGTRYGASLRKQIKKMEVSQH+KYFCEFCGKY+VKR+ VGIWGCKDCGK
Sbjct: 3   KRTKKARIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDCGK 62

Query: 76  VKAGGAYTLNTASAVTVRSTIRRLREQTE 105
           VKAGGAYT+NTASAVTVRSTIRRLREQTE
Sbjct: 63  VKAGGAYTMNTASAVTVRSTIRRLREQTE 91
The following BLAST results are available for this feature:
BLAST of Spo16033.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|848866574|ref|XP_012833952.1|3.9e-43100.PREDICTED: 60S ribosomal prote... [more]
gi|823151915|ref|XP_012475788.1|1.1e-4291.7PREDICTED: 60S ribosomal prote... [more]
gi|297742195|emb|CBI33982.3|1.1e-4293.6unnamed protein product [Vitis... [more]
gi|747043785|ref|XP_011085665.1|1.1e-4298.8PREDICTED: 60S ribosomal prote... [more]
gi|604343407|gb|EYU42327.1|1.1e-4298.8hypothetical protein MIMGU_mgv... [more]
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BLAST of Spo16033.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A022RJG1_ERYGU2.7e-43100.Uncharacterized protein OS=Ery... [more]
A0A0K9S0Q1_SPIOL2.7e-43100.Uncharacterized protein OS=Spi... [more]
A0A0D2PEL3_GOSRA7.9e-4391.7Uncharacterized protein OS=Gos... [more]
A0A022RPB9_ERYGU7.9e-4398.8Uncharacterized protein (Fragm... [more]
D7TTK2_VITVI7.9e-4393.6Putative uncharacterized prote... [more]
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BLAST of Spo16033.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RL371_ORYSJ3.0e-4395.560S ribosomal protein L37a-1 O... [more]
RL372_ORYSJ3.0e-4395.560S ribosomal protein L37a-2 O... [more]
R37A2_ARATH3.0e-4394.460S ribosomal protein L37a-2 O... [more]
RL37A_GOSHI5.1e-4396.660S ribosomal protein L37a OS=... [more]
RL37A_PSEMZ1.9e-4294.360S ribosomal protein L37a OS=... [more]
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BLAST of Spo16033.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT3G60245.11.7e-4494.4Zinc-binding ribosomal protein... [more]
AT3G10950.17.0e-4392.1Zinc-binding ribosomal protein... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002674Ribosomal protein L37aeHAMAPMF_00327Ribosomal_L37Aecoord: 17..85
score: 19
IPR002674Ribosomal protein L37aePFAMPF01780Ribosomal_L37aecoord: 17..101
score: 1.1
IPR002674Ribosomal protein L37aeTIGRFAMsTIGR00280TIGR00280coord: 15..104
score: 9.4
IPR011331Ribosomal protein L37ae/L37eGENE3D2.20.25.30coord: 23..104
score: 4.0
IPR011332Zinc-binding ribosomal proteinunknownSSF57829Zn-binding ribosomal proteinscoord: 23..95
score: 1.59

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process GO:0006183 GTP biosynthetic process
biological_process GO:0006165 nucleoside diphosphate phosphorylation
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006412 translation
biological_process GO:0006228 UTP biosynthetic process
biological_process GO:0006414 translational elongation
biological_process GO:0001510 RNA methylation
biological_process GO:0042545 cell wall modification
biological_process GO:0009664 plant-type cell wall organization
biological_process GO:0001522 pseudouridine synthesis
biological_process GO:0034968 histone lysine methylation
biological_process GO:0009909 regulation of flower development
biological_process GO:0006457 protein folding
biological_process GO:0006364 rRNA processing
biological_process GO:0006241 CTP biosynthetic process
biological_process GO:0009585 red, far-red light phototransduction
biological_process GO:0016567 protein ubiquitination
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0000028 ribosomal small subunit assembly
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005829 cytosol
cellular_component GO:0005840 ribosome
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0031429 box H/ACA snoRNP complex
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0005886 plasma membrane
cellular_component GO:0009506 plasmodesma
cellular_component GO:0016020 membrane
cellular_component GO:0005730 nucleolus
cellular_component GO:0005618 cell wall
cellular_component GO:0009507 chloroplast
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005622 intracellular
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0051082 unfolded protein binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0003924 GTPase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0019843 rRNA binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0005525 GTP binding
molecular_function GO:0016779 nucleotidyltransferase activity
molecular_function GO:0004550 nucleoside diphosphate kinase activity
molecular_function GO:0008097 5S rRNA binding
molecular_function GO:0000166 nucleotide binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo172710.86Barchart | Table
Spo105180.81Barchart | Table
Spo123040.81Barchart | Table
Spo192360.78Barchart | Table
Spo271540.77Barchart | Table
Spo231930.76Barchart | Table
Spo209350.76Barchart | Table
Spo127590.76Barchart | Table
Spo174950.75Barchart | Table
Spo050640.75Barchart | Table
Spo037010.74Barchart | Table
Spo121910.74Barchart | Table
Spo020110.74Barchart | Table
Spo198330.74Barchart | Table
Spo012620.74Barchart | Table
Spo232200.74Barchart | Table
Spo234980.73Barchart | Table
Spo071450.73Barchart | Table
Spo134810.73Barchart | Table
Spo088160.73Barchart | Table
Spo052750.72Barchart | Table
Spo052440.72Barchart | Table
Spo023970.72Barchart | Table
Spo003630.71Barchart | Table
Spo056320.71Barchart | Table
Spo207890.71Barchart | Table
Spo206470.71Barchart | Table
Spo205190.71Barchart | Table
Spo201610.71Barchart | Table
Spo076680.71Barchart | Table
Spo255230.70Barchart | Table
Spo186470.70Barchart | Table
Spo209970.70Barchart | Table
Spo046670.70Barchart | Table
Spo126810.70Barchart | Table
Spo223940.69Barchart | Table
Spo057830.69Barchart | Table
Spo069040.69Barchart | Table
Spo074020.69Barchart | Table
Spo086910.69Barchart | Table
Spo123110.69Barchart | Table
Spo132790.69Barchart | Table
Spo132880.69Barchart | Table
Spo167490.69Barchart | Table
Spo179030.69Barchart | Table
Spo194400.69Barchart | Table
Spo204600.69Barchart | Table
Spo047550.68Barchart | Table
Spo075990.68Barchart | Table
Spo140630.68Barchart | Table
Spo067060.68Barchart | Table
Spo019990.68Barchart | Table
Spo025340.68Barchart | Table
Spo022180.68Barchart | Table
Spo223100.68Barchart | Table
Spo194130.68Barchart | Table
Spo060940.67Barchart | Table
Spo176620.67Barchart | Table
Spo256350.67Barchart | Table
Spo179290.67Barchart | Table
Spo101470.67Barchart | Table
Spo219220.67Barchart | Table
Spo001700.67Barchart | Table
Spo247030.67Barchart | Table
Spo251760.67Barchart | Table
Spo059090.66Barchart | Table
Spo211860.66Barchart | Table
Spo146920.66Barchart | Table
Spo236220.66Barchart | Table
Spo202840.66Barchart | Table
Spo070170.66Barchart | Table
Spo256690.66Barchart | Table
Spo148750.66Barchart | Table
Spo029280.66Barchart | Table
Spo184070.66Barchart | Table
Spo023800.66Barchart | Table
Spo078210.65Barchart | Table
Spo171090.65Barchart | Table
Spo070160.65Barchart | Table
Spo125160.65Barchart | Table