Spo16070 (gene) | SpinachBase

Overview


Name	Spo16070
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	SpoScf_01441 : 25600 .. 25806 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTTGGTAGTAGTGATATCTCTGCCATTGATATTATTGTGCATACTAATGGGAATTGGGTGTTACTTCCTTGGTAGGAAAAGAGGAAGAGAAGAAGCTCGTTGCCAAGTTATGGGAGCCCCGGCACCGCCTCTCGGATCGTACCCTAACTCCCCTGCTCCTCCTCCTCCCTTCTACAAGCAAGCTGATCACTCTCATGTTTGA

mRNA sequence

ATGGGGTTGGTAGTAGTGATATCTCTGCCATTGATATTATTGTGCATACTAATGGGAATTGGGTGTTACTTCCTTGGTAGGAAAAGAGGAAGAGAAGAAGCTCGTTGCCAAGTTATGGGAGCCCCGGCACCGCCTCTCGGATCGTACCCTAACTCCCCTGCTCCTCCTCCTCCCTTCTACAAGCAAGCTGATCACTCTCATGTTTGA

Coding sequence (CDS)

ATGGGGTTGGTAGTAGTGATATCTCTGCCATTGATATTATTGTGCATACTAATGGGAATTGGGTGTTACTTCCTTGGTAGGAAAAGAGGAAGAGAAGAAGCTCGTTGCCAAGTTATGGGAGCCCCGGCACCGCCTCTCGGATCGTACCCTAACTCCCCTGCTCCTCCTCCTCCCTTCTACAAGCAAGCTGATCACTCTCATGTTTGA

Protein sequence

MGLVVVISLPLILLCILMGIGCYFLGRKRGREEARCQVMGAPAPPLGSYPNSPAPPPPFYKQADHSHV

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo16070.1	Spo16070.1	mRNA

Homology

[Close]

BLAST of Spo16070.1 vs. NCBI nr
Match: gi|902151534|gb|KNA05545.1| (hypothetical protein SOVF_189370 [Spinacia oleracea])

HSP 1 Score: 113.6 bits (283), Expect = 1.300e-22
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1


		  
Query: 18 MGIGCYFLGRKRGREEARCQVMGAPAPPLGSYPNSPAPPPPFYKQADHSHV 69
          MGIGCYFLGRKRGREEARCQVMGAPAPPLGSYPNSPAPPPPFYKQADHSHV
Sbjct: 1  MGIGCYFLGRKRGREEARCQVMGAPAPPLGSYPNSPAPPPPFYKQADHSHV 51

[Close]

BLAST of Spo16070.1 vs. NCBI nr
Match: gi|731365972|ref|XP_010694811.1| (PREDICTED: uncharacterized protein LOC104907569 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 104.8 bits (260), Expect = 6.200e-20
Identity = 56/68 (82.35%), Postives = 59/68 (86.76%), Query Frame = 1


		  
Query: 1  MGLVVVISLPLILLCILMGIGCYFLGRKRGREEARCQVMGAPAPPLGSYPNSPAPPPPFY 60
          MGLVVVISLPLILLCIL+ IGCYFLGRK+GREEARCQV G PAPP GS+PNSPA PPPF 
Sbjct: 1  MGLVVVISLPLILLCILLSIGCYFLGRKKGREEARCQVFGTPAPPPGSFPNSPA-PPPFS 60

Query: 61 KQADHSHV 69
          K  D SHV
Sbjct: 61 KPMD-SHV 66

[Close]

BLAST of Spo16070.1 vs. NCBI nr
Match: gi|702355773|ref|XP_010058705.1| (PREDICTED: uncharacterized protein LOC104446564 [Eucalyptus grandis])

HSP 1 Score: 75.5 bits (184), Expect = 4.000e-11
Identity = 40/63 (63.49%), Postives = 47/63 (74.60%), Query Frame = 1


		  
Query: 1  MGLVVVISLPLILLCILMGIGCYFLGRKRGREEARC--QVMGAPAPPLGSYPNSPAPPPP 60
          MGLVVVISLPLIL C+L+G GCYF GR RGR++ R   QV G P PP G++  SP PPPP
Sbjct: 1  MGLVVVISLPLILFCLLLGFGCYFFGRARGRQDIRTNPQVYGTPTPPPGTF--SPPPPPP 60

Query: 61 FYK 62
           +K
Sbjct: 61 HFK 61

[Close]

BLAST of Spo16070.1 vs. NCBI nr
Match: gi|703106355|ref|XP_010098480.1| (hypothetical protein L484_025916 [Morus notabilis])

HSP 1 Score: 73.6 bits (179), Expect = 1.500e-10
Identity = 40/70 (57.14%), Postives = 49/70 (70.00%), Query Frame = 1


		  
Query: 1  MGLVVVISLPLILLCILMGIGCYFLGRKRGREEAR--CQVMGAPAPPLGSYPNSPAPPPP 60
          MG+VVVISLPLIL C+L+G GCYFLGR RGR++ R   Q+ G PAPP G+    P+PPP 
Sbjct: 1  MGMVVVISLPLILFCLLLGFGCYFLGRARGRQDVRTNAQIYGVPAPPPGAANPFPSPPPS 60

Query: 61 FYKQADHSHV 69
            K    S+V
Sbjct: 61 HSKPNISSNV 70

[Close]

BLAST of Spo16070.1 vs. NCBI nr
Match: gi|629112261|gb|KCW77221.1| (hypothetical protein EUGRSUZ_D01574 [Eucalyptus grandis])

HSP 1 Score: 70.5 bits (171), Expect = 1.300e-9
Identity = 39/63 (61.90%), Postives = 46/63 (73.02%), Query Frame = 1


		  
Query: 1  MGLVVVISLPLILLCILMGIGCYFLGRKRGREEARC--QVMGAPAPPLGSYPNSPAPPPP 60
          MGLVVVISLPLIL C+L+G GCYF GR RGR++ R   QV G P PP G++  SP PP P
Sbjct: 1  MGLVVVISLPLILFCLLLGFGCYFFGRARGRQDIRTNPQVYGTPTPPPGTFA-SPPPPFP 60

Query: 61 FYK 62
           +K
Sbjct: 61 HFK 62

[Close]

BLAST of Spo16070.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QE55_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_189370 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 9.400e-23
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1


		  
Query: 18 MGIGCYFLGRKRGREEARCQVMGAPAPPLGSYPNSPAPPPPFYKQADHSHV 69
          MGIGCYFLGRKRGREEARCQVMGAPAPPLGSYPNSPAPPPPFYKQADHSHV
Sbjct: 1  MGIGCYFLGRKRGREEARCQVMGAPAPPLGSYPNSPAPPPPFYKQADHSHV 51

[Close]

BLAST of Spo16070.1 vs. UniProtKB/TrEMBL
Match: A0A059C5R5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E02008 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.800e-11
Identity = 40/63 (63.49%), Postives = 47/63 (74.60%), Query Frame = 1


		  
Query: 1  MGLVVVISLPLILLCILMGIGCYFLGRKRGREEARC--QVMGAPAPPLGSYPNSPAPPPP 60
          MGLVVVISLPLIL C+L+G GCYF GR RGR++ R   QV G P PP G++  SP PPPP
Sbjct: 1  MGLVVVISLPLILFCLLLGFGCYFFGRARGRQDIRTNPQVYGTPTPPPGTF--SPPPPPP 60

Query: 61 FYK 62
           +K
Sbjct: 61 HFK 61

[Close]

BLAST of Spo16070.1 vs. UniProtKB/TrEMBL
Match: W9RI30_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025916 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.100e-10
Identity = 40/70 (57.14%), Postives = 49/70 (70.00%), Query Frame = 1


		  
Query: 1  MGLVVVISLPLILLCILMGIGCYFLGRKRGREEAR--CQVMGAPAPPLGSYPNSPAPPPP 60
          MG+VVVISLPLIL C+L+G GCYFLGR RGR++ R   Q+ G PAPP G+    P+PPP 
Sbjct: 1  MGMVVVISLPLILFCLLLGFGCYFLGRARGRQDVRTNAQIYGVPAPPPGAANPFPSPPPS 60

Query: 61 FYKQADHSHV 69
            K    S+V
Sbjct: 61 HSKPNISSNV 70

[Close]

BLAST of Spo16070.1 vs. UniProtKB/TrEMBL
Match: A0A059CGA8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D01574 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 9.100e-10
Identity = 39/63 (61.90%), Postives = 46/63 (73.02%), Query Frame = 1


		  
Query: 1  MGLVVVISLPLILLCILMGIGCYFLGRKRGREEARC--QVMGAPAPPLGSYPNSPAPPPP 60
          MGLVVVISLPLIL C+L+G GCYF GR RGR++ R   QV G P PP G++  SP PP P
Sbjct: 1  MGLVVVISLPLILFCLLLGFGCYFFGRARGRQDIRTNPQVYGTPTPPPGTFA-SPPPPFP 60

Query: 61 FYK 62
           +K
Sbjct: 61 HFK 62

[Close]

BLAST of Spo16070.1 vs. UniProtKB/TrEMBL
Match: Q8LG39_ARATH (At1g31335 OS=Arabidopsis thaliana GN=At1g31335 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.200e-9
Identity = 41/69 (59.42%), Postives = 48/69 (69.57%), Query Frame = 1


		  
Query: 1  MGLVVVISLPLILLCILMGIGCYFLGRKRGREEARC--QVMGAPAPPLGSYPNSPAPPPP 60
          MGLVVVISLPLI  C+L+G GCYFLG+ RGR E R   QV GAPAPP G+   S  P  P
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGKSRGRREIRTNPQVYGAPAPPPGAIAASSPPLSP 60

Query: 61 FYKQADHSH 68
           + + D+SH
Sbjct: 61 -HAKPDNSH 68

[Close]

BLAST of Spo16070.1 vs. TAIR (Arabidopsis)
Match: AT1G31335.1 (unknown protein)

HSP 1 Score: 70.1 bits (170), Expect = 6.000e-13
Identity = 41/69 (59.42%), Postives = 48/69 (69.57%), Query Frame = 1


		  
Query: 1  MGLVVVISLPLILLCILMGIGCYFLGRKRGREEARC--QVMGAPAPPLGSYPNSPAPPPP 60
          MGLVVVISLPLI  C+L+G GCYFLG+ RGR E R   QV GAPAPP G+   S  P  P
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGKSRGRREIRTNPQVYGAPAPPPGAIAASSPPLSP 60

Query: 61 FYKQADHSH 68
           + + D+SH
Sbjct: 61 -HAKPDNSH 68

The following BLAST results are available for this feature:

BLAST of Spo16070.1 vs. NCBI nr
BLAST of Spo16070.1 vs. UniProtKB/TrEMBL
BLAST of Spo16070.1 vs. ExPASy Swiss-Prot
BLAST of Spo16070.1 vs. TAIR (Arabidopsis)

BLAST of Spo16070.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902151534\|gb\|KNA05545.1\|	1.3e-22	100.	hypothetical protein SOVF_1893...	[more]
gi\|731365972\|ref\|XP_010694811.1\|	6.2e-20	82.3	PREDICTED: uncharacterized pro...	[more]
gi\|702355773\|ref\|XP_010058705.1\|	4.0e-11	63.4	PREDICTED: uncharacterized pro...	[more]
gi\|703106355\|ref\|XP_010098480.1\|	1.5e-10	57.1	hypothetical protein L484_0259...	[more]
gi\|629112261\|gb\|KCW77221.1\|	1.3e-9	61.9	hypothetical protein EUGRSUZ_D...	[more]

BLAST of Spo16070.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QE55_SPIOL	9.4e-23	100.	Uncharacterized protein OS=Spi...	[more]
A0A059C5R5_EUCGR	2.8e-11	63.4	Uncharacterized protein OS=Euc...	[more]
W9RI30_9ROSA	1.1e-10	57.1	Uncharacterized protein OS=Mor...	[more]
A0A059CGA8_EUCGR	9.1e-10	61.9	Uncharacterized protein OS=Euc...	[more]
Q8LG39_ARATH	1.2e-9	59.4	At1g31335 OS=Arabidopsis thali...	[more]

BLAST of Spo16070.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo16070.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT1G31335.1	6.0e-13	59.4	unknown protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33727	FAMILY NOT NAMED	coord: 1..61 score: 7.4

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016120	carotene biosynthetic process
biological_process	GO:0006635	fatty acid beta-oxidation
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006506	GPI anchor biosynthetic process
biological_process	GO:0009407	toxin catabolic process
biological_process	GO:0009651	response to salt stress
biological_process	GO:0051788	response to misfolded protein
biological_process	GO:0046686	response to cadmium ion
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process	GO:0080129	proteasome core complex assembly
biological_process	GO:0006096	glycolytic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0010103	stomatal complex morphogenesis
biological_process	GO:0015991	ATP hydrolysis coupled proton transport
biological_process	GO:0009765	photosynthesis, light harvesting
biological_process	GO:0016123	xanthophyll biosynthetic process
cellular_component	GO:0031969	chloroplast membrane
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0033179	proton-transporting V-type ATPase, V0 domain
cellular_component	GO:0031410	cytoplasmic vesicle
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005839	proteasome core complex
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0015078	proton transmembrane transporter activity
molecular_function	GO:0004298	threonine-type endopeptidase activity
molecular_function	GO:0045435	lycopene epsilon cyclase activity
molecular_function	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
molecular_function	GO:0016758	transferase activity, transferring hexosyl groups

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo24625	0.68	Barchart \| Table
Spo00936	0.68	Barchart \| Table
Spo05029	0.68	Barchart \| Table
Spo12253	0.68	Barchart \| Table
Spo14687	0.68	Barchart \| Table
Spo00898	0.67	Barchart \| Table
Spo01914	0.67	Barchart \| Table
Spo13459	0.66	Barchart \| Table
Spo14441	0.66	Barchart \| Table
Spo12202	0.65	Barchart \| Table