Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTATACATATATAACCGTTTGTTTGGATTTTGATATTGACAGTTGAGAAAACCAGCTAATATAGACAGTCTTGAATAACAGTGAAAGCCAAACATCCTTATCTACTTCCTCAATTATTCACAAGTCATAATCCCCAACCATATTAACATCCAGTTGGAAGTGGGGGTAATATAATTAACTCACTTAGTAATAATCATCCAACGGCAATATAATGTTGTCCAACTTATCACATTCCCTTATCTACTTCCTCCTTGTCGTAGTCGGTGCCGCCTTTTTAGTATCTCCGGCCACCGCCACCGACCACATTGTTGGCGCCAATAAGGGGTGGAACCCAGGAATGAACTACACTGATTGGGCTAACAACCAAACCTTCTTTGTTGGTGATTTCATATGTAAGTCCCCTTCATGTTATGCTTATATATATTATATTCCTAGCTTAAGAAGTTTTTGATTGTATATTGTTGTTCTTAATGATATGTGATTTGTCCATAATATGCACATAAATGCCTTAAATTTCTTACAAAATTTCAATGAGATGATCAGGTTCTGTATATGCAGTCATAAATTATGCTTAATGAAAGTGTTCATCTGATGGCAGTGGTGGTTTCTTCATTCTGTCTCACCAAGCAAAAAGTTCCGTTGTGTACTTTTAGTTTCGCCCCCTAAAATTTGAATATAAATATAATTGTACAAAGTTCATACTACGTTGATTAATTATTCTACTCGCCCCCTCGTAAAACAGTCCAAGATCCGCCACTGTCTGCTAGTAACAATGTCATAAAATTTTAGTACAGATGTGCCATTACAAGTTAAAGACTGTATTAGAGCTGATCATAAGACTGTATTTTAGTACAAATGTGCCATTACAAGTGCAAACTTGGCCTGATTTTAGGCCAAGTGCGCTTAGACATACTTGATCTGTAGACTAAAGATGGTTGTGGGCCGGGTCAGCCCAAGGCCCGACACGAAAATCACGGGCCGACACAAGCACATAGTCGTGGTGGGCCGCATTTTTTAGGGAAAAACACGACAAGACATCACACGACTCAAACTGGCACGACAAGGCACGACTGCCCGTGGACATGGGCCTGACTTTGAACCTTTTGACCCGGACCAACAGGATACAAATAGGCCGGGCCCGTTTAGGGCCACGGATCGTGGGCTTGGCTCGAATCCTGGCCTGCTCGGCCTACAATACAACTATCTTTACTGTAGACTATTTACATTTAGCAGTCAAATTAAATGTCTGCTTTTCAGAACACTAAAATTTTCAATTGTTGCAGCCTTTAGGTACAAGAAGTTCGAGTACAATGTGTTTGAAGTAAACAAGACAGGGTATGAAAATTGTACTATAGAAGGAGCAACAGGAAACTGGAGCAAAGGAAAGGACTTTATCCCACTGGAAAAGCCAGGAAAACACTACTTCATTTGTGGCACTGGTGGTTGTAATAGTGGAATGAAGGTTTCCATTGTTGTTCACTCGCTTCCTCCGCCACCTTCCGCCTCTATTACCGCCACCAAACACTCCTCTGAATCTTCTAAACATGTATCAGATGCTGCAGAAGTGGCTTCAGGGCGGTTGTTGCTGTTGGTTTTAAGGGGATTGGTAGTAGGTTTAGTGTCTTCAATTTGGATGTGATAACCTGTTATAATTAACCAACTGTTAAGGTTTGAATGTGGTTTTGTTGATCAATTTTAGTCATGAAGAAAATTTTTGAGGAATTGTGTGCTTAATTTATGTGTTTAATTGTCATGGTATTTGATTATTGGTAGTGATAAAAATCCCACAATTGTTGTTCAATTAAAATTATGTGTCCAACTAAATAAAGATGTGGTCATGTTGGTGTTTGGATCAACACATCAACATCAGCCAGTACCAACAAGAAAGACTCTTATAAAGTACGAAGTATCAGCATTTCCAAGTTTAAAACAAAATGAGGTGA CTATACATATATAACCGTTTGTTTGGATTTTGATATTGACAGTTGAGAAAACCAGCTAATATAGACAGTCTTGAATAACAGTGAAAGCCAAACATCCTTATCTACTTCCTCAATTATTCACAAGTCATAATCCCCAACCATATTAACATCCAGTTGGAAGTGGGGGTAATATAATTAACTCACTTAGTAATAATCATCCAACGGCAATATAATGTTGTCCAACTTATCACATTCCCTTATCTACTTCCTCCTTGTCGTAGTCGGTGCCGCCTTTTTAGTATCTCCGGCCACCGCCACCGACCACATTGTTGGCGCCAATAAGGGGTGGAACCCAGGAATGAACTACACTGATTGGGCTAACAACCAAACCTTCTTTGTTGGTGATTTCATATCCTTTAGGTACAAGAAGTTCGAGTACAATGTGTTTGAAGTAAACAAGACAGGGTATGAAAATTGTACTATAGAAGGAGCAACAGGAAACTGGAGCAAAGGAAAGGACTTTATCCCACTGGAAAAGCCAGGAAAACACTACTTCATTTGTGGCACTGGTGGTTGTAATAGTGGAATGAAGGTTTCCATTGTTGTTCACTCGCTTCCTCCGCCACCTTCCGCCTCTATTACCGCCACCAAACACTCCTCTGAATCTTCTAAACATGTATCAGATGCTGCAGAAGTGGCTTCAGGGCGGTTGTTGCTGTTGGTTTTAAGGGGATTGGTAGTAGGTTTAGTGTCTTCAATTTGGATGTGATAACCTGTTATAATTAACCAACTGTTAAGGTTTGAATGTGGTTTTGTTGATCAATTTTAGTCATGAAGAAAATTTTTGAGGAATTGTGTGCTTAATTTATGTGTTTAATTGTCATGGTATTTGATTATTGGTAGTGATAAAAATCCCACAATTGTTGTTCAATTAAAATTATGTGTCCAACTAAATAAAGATGTGGTCATGTTGGTGTTTGGATCAACACATCAACATCAGCCAGTACCAACAAGAAAGACTCTTATAAAGTACGAAGTATCAGCATTTCCAAGTTTAAAACAAAATGAGGTGA ATGTTGTCCAACTTATCACATTCCCTTATCTACTTCCTCCTTGTCGTAGTCGGTGCCGCCTTTTTAGTATCTCCGGCCACCGCCACCGACCACATTGTTGGCGCCAATAAGGGGTGGAACCCAGGAATGAACTACACTGATTGGGCTAACAACCAAACCTTCTTTGTTGGTGATTTCATATCCTTTAGGTACAAGAAGTTCGAGTACAATGTGTTTGAAGTAAACAAGACAGGGTATGAAAATTGTACTATAGAAGGAGCAACAGGAAACTGGAGCAAAGGAAAGGACTTTATCCCACTGGAAAAGCCAGGAAAACACTACTTCATTTGTGGCACTGGTGGTTGTAATAGTGGAATGAAGGTTTCCATTGTTGTTCACTCGCTTCCTCCGCCACCTTCCGCCTCTATTACCGCCACCAAACACTCCTCTGAATCTTCTAAACATGTATCAGATGCTGCAGAAGTGGCTTCAGGGCGGTTGTTGCTGTTGGTTTTAAGGGGATTGGTAGTAGGTTTAGTGTCTTCAATTTGGATGTGA MLSNLSHSLIYFLLVVVGAAFLVSPATATDHIVGANKGWNPGMNYTDWANNQTFFVGDFISFRYKKFEYNVFEVNKTGYENCTIEGATGNWSKGKDFIPLEKPGKHYFICGTGGCNSGMKVSIVVHSLPPPPSASITATKHSSESSKHVSDAAEVASGRLLLLVLRGLVVGLVSSIWM Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo16190.1 vs. NCBI nr
Match: gi|902148829|gb|KNA05280.1| (hypothetical protein SOVF_191880 [Spinacia oleracea]) HSP 1 Score: 355.9 bits (912), Expect = 4.100e-95 Identity = 176/178 (98.88%), Postives = 176/178 (98.88%), Query Frame = 1
BLAST of Spo16190.1 vs. NCBI nr
Match: gi|731359038|ref|XP_010691071.1| (PREDICTED: lamin-like protein [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 280.8 bits (717), Expect = 1.700e-72 Identity = 143/180 (79.44%), Postives = 161/180 (89.44%), Query Frame = 1
BLAST of Spo16190.1 vs. NCBI nr
Match: gi|747043169|ref|XP_011082420.1| (PREDICTED: lamin-like protein [Sesamum indicum]) HSP 1 Score: 206.1 bits (523), Expect = 5.200e-50 Identity = 103/172 (59.88%), Postives = 129/172 (75.00%), Query Frame = 1
BLAST of Spo16190.1 vs. NCBI nr
Match: gi|702381010|ref|XP_010063579.1| (PREDICTED: lamin-like protein [Eucalyptus grandis]) HSP 1 Score: 204.5 bits (519), Expect = 1.500e-49 Identity = 104/169 (61.54%), Postives = 126/169 (74.56%), Query Frame = 1
BLAST of Spo16190.1 vs. NCBI nr
Match: gi|661898270|emb|CDO98237.1| (unnamed protein product [Coffea canephora]) HSP 1 Score: 202.6 bits (514), Expect = 5.700e-49 Identity = 96/147 (65.31%), Postives = 115/147 (78.23%), Query Frame = 1
BLAST of Spo16190.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QDE8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_191880 PE=4 SV=1) HSP 1 Score: 355.9 bits (912), Expect = 2.800e-95 Identity = 176/178 (98.88%), Postives = 176/178 (98.88%), Query Frame = 1
BLAST of Spo16190.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BKL4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g219040 PE=4 SV=1) HSP 1 Score: 280.8 bits (717), Expect = 1.200e-72 Identity = 143/180 (79.44%), Postives = 161/180 (89.44%), Query Frame = 1
BLAST of Spo16190.1 vs. UniProtKB/TrEMBL
Match: A0A059BYT5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03968 PE=4 SV=1) HSP 1 Score: 204.5 bits (519), Expect = 1.100e-49 Identity = 104/169 (61.54%), Postives = 126/169 (74.56%), Query Frame = 1
BLAST of Spo16190.1 vs. UniProtKB/TrEMBL
Match: A0A068TQG1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00022263001 PE=4 SV=1) HSP 1 Score: 202.6 bits (514), Expect = 4.000e-49 Identity = 96/147 (65.31%), Postives = 115/147 (78.23%), Query Frame = 1
BLAST of Spo16190.1 vs. UniProtKB/TrEMBL
Match: A0A067LBU1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26978 PE=4 SV=1) HSP 1 Score: 200.3 bits (508), Expect = 2.000e-48 Identity = 96/171 (56.14%), Postives = 125/171 (73.10%), Query Frame = 1
BLAST of Spo16190.1 vs. ExPASy Swiss-Prot
Match: LAML_ARATH (Lamin-like protein OS=Arabidopsis thaliana GN=At5g15350 PE=1 SV=1) HSP 1 Score: 110.9 bits (276), Expect = 1.400e-23 Identity = 52/129 (40.31%), Postives = 79/129 (61.24%), Query Frame = 1
BLAST of Spo16190.1 vs. ExPASy Swiss-Prot
Match: BCP_PEA (Blue copper protein OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 90.1 bits (222), Expect = 2.600e-17 Identity = 58/150 (38.67%), Postives = 82/150 (54.67%), Query Frame = 1
BLAST of Spo16190.1 vs. ExPASy Swiss-Prot
Match: MAVI_CUCPE (Mavicyanin OS=Cucurbita pepo PE=1 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 1.300e-13 Identity = 38/101 (37.62%), Postives = 57/101 (56.44%), Query Frame = 1
BLAST of Spo16190.1 vs. ExPASy Swiss-Prot
Match: BCB3_ARATH (Uclacyanin-3 OS=Arabidopsis thaliana GN=UCC3 PE=2 SV=1) HSP 1 Score: 77.4 bits (189), Expect = 1.700e-13 Identity = 50/135 (37.04%), Postives = 71/135 (52.59%), Query Frame = 1
BLAST of Spo16190.1 vs. ExPASy Swiss-Prot
Match: ENL1_ARATH (Early nodulin-like protein 1 OS=Arabidopsis thaliana GN=At2g25060 PE=1 SV=2) HSP 1 Score: 75.1 bits (183), Expect = 8.700e-13 Identity = 59/182 (32.42%), Postives = 87/182 (47.80%), Query Frame = 1
BLAST of Spo16190.1 vs. TAIR (Arabidopsis)
Match: AT5G15350.1 (early nodulin-like protein 17) HSP 1 Score: 110.9 bits (276), Expect = 8.000e-25 Identity = 52/129 (40.31%), Postives = 79/129 (61.24%), Query Frame = 1
BLAST of Spo16190.1 vs. TAIR (Arabidopsis)
Match: AT4G12880.1 (early nodulin-like protein 19) HSP 1 Score: 104.0 bits (258), Expect = 9.800e-23 Identity = 50/126 (39.68%), Postives = 77/126 (61.11%), Query Frame = 1
BLAST of Spo16190.1 vs. TAIR (Arabidopsis)
Match: AT3G01070.1 (early nodulin-like protein 16) HSP 1 Score: 102.4 bits (254), Expect = 2.900e-22 Identity = 59/147 (40.14%), Postives = 88/147 (59.86%), Query Frame = 1
BLAST of Spo16190.1 vs. TAIR (Arabidopsis)
Match: AT2G27035.1 (early nodulin-like protein 20) HSP 1 Score: 90.9 bits (224), Expect = 8.600e-19 Identity = 49/141 (34.75%), Postives = 80/141 (56.74%), Query Frame = 1
BLAST of Spo16190.1 vs. TAIR (Arabidopsis)
Match: AT3G17675.1 (Cupredoxin superfamily protein) HSP 1 Score: 90.5 bits (223), Expect = 1.100e-18 Identity = 43/98 (43.88%), Postives = 60/98 (61.22%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo16190.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo16190.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo16190.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo16190.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29 Position : 0 Zoom : x 1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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