Spo16392 (gene)

Overview
NameSpo16392
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr2 : 42103391 .. 42104661 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGTTTAGCAACAAGTTGATGGTCCGGCAAAAACCATTACACTCAAAACTGGTACTCTACAACAATGGCTCACCCGAGATAGTAAAATGCAAGCCCGCAATGACTTATCACCGAAAACCTGGCCCATTTACTTTGCTATAGTAGTTTGTTGGATTTGAAGATGGAGGATTGGTGTGACCTTTCAATCGTGCTCAAGAAATCTCGATTGATGTGAATTCCTTTCTTTTTGCACGATTTGCATAAGCTTGGAAAGGGGTTAATGTACTCGATTAAGAGACCCTTGGTAGTGCTCGAAGGGAGGCATTTATTAGATGGCTTGCTCCCTCTAATGGTTGGGTTGCTCTCAATTCTGACAGGGCTACAATAGGAACTTTGGGGCGTACATGTGGTGGTGGCCTAATTCGAGACAAAAGCTACTCTACAATATGCTTATTCCTTGACCTTTAGTTCATGTAATTCTTTTATTGTTGAAGTAAGGGCTTTGGAGTTTGGGTTAAAGCCGGCCAAGAGAATGACGCTAATTAAATTGCAAGTTTAGATGGATAATCAAGCTGCGGTTTTGGCTCTTTAAGGCACATAAGCATATGAAGGGGAATGTGTTCACATTATACACCATTGCTAAACCGAGGTGGGAGTAGAGGTGAAGCATTGCTATCCCGAAGGCAATAGGCTCGCAGATTGGTTGGCCAACCAAGATGTTACGTAGAATAACAAGCTTTGAGTTAATTCAAGTCTTTCTGTTACATTTAGGTCGCATTTTACATGATGATGATGTAGGTGTGGCTATGCCACGTTTTATTCATTTGTAATAGTAGTTTGTTTTTGTTTATTTATTTATCGAGAAGTGCCTCTCATTTTGCATCAAAAATAATTTTTTTAATCGAAAACTCTCGCCAAACCGAACCCAACACTCGAACACTCAAACATCATAACACTCAAACACTCAAGGTAATTGGGTTGCAACTTTACCCTCCAAAGGGCCACAAAACCAAACAAGAACAATCACCAATCTTGGGCTATATATCCTCTCTTGAGAATCATAATAGGTTGCTTACAAAAAAATTGATGTATAAATTTTGATTTTGAGGTCAATACTCAATCAGCAATAGCCAAGGAAGCCATCACCTTTTTACCTTAGCATCTATCTCTCTCTCTTCTTCCTCACCTGCACCTTTTGCTGGTCAGGTTTCTCATTGAACCCTGGAGAATCCAGAACCAAATCCCCCAAATTCTCTCCCCTAAACTCTAAATTATTCATCAATCATTAG

mRNA sequence

ATGATGTTTAGCAACAAGTTGATGGTCCGGCAAAAACCATTACACTCAAAACTGCCAAGGAAGCCATCACCTTTTTACCTTAGCATCTATCTCTCTCTCTTCTTCCTCACCTGCACCTTTTGCTGGTCAGGTTTCTCATTGAACCCTGGAGAATCCAGAACCAAATCCCCCAAATTCTCTCCCCTAAACTCTAAATTATTCATCAATCATTAG

Coding sequence (CDS)

ATGATGTTTAGCAACAAGTTGATGGTCCGGCAAAAACCATTACACTCAAAACTGCCAAGGAAGCCATCACCTTTTTACCTTAGCATCTATCTCTCTCTCTTCTTCCTCACCTGCACCTTTTGCTGGTCAGGTTTCTCATTGAACCCTGGAGAATCCAGAACCAAATCCCCCAAATTCTCTCCCCTAAACTCTAAATTATTCATCAATCATTAG

Protein sequence

MMFSNKLMVRQKPLHSKLPRKPSPFYLSIYLSLFFLTCTFCWSGFSLNPGESRTKSPKFSPLNSKLFINH
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo16392.1Spo16392.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo16392.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo16392.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo16392.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo16392.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001510 RNA methylation
biological_process GO:0015979 photosynthesis
biological_process GO:0019761 glucosinolate biosynthetic process
biological_process GO:0006094 gluconeogenesis
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0009693 ethylene biosynthetic process
biological_process GO:0019447 D-cysteine catabolic process
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0016226 iron-sulfur cluster assembly
biological_process GO:0048481 plant ovule development
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0006364 rRNA processing
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0009407 toxin catabolic process
biological_process GO:0009636 response to toxic substance
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0010583 response to cyclopentenone
biological_process GO:0010731 protein glutathionylation
biological_process GO:0016311 dephosphorylation
biological_process GO:0006021 inositol biosynthetic process
biological_process GO:0000023 maltose metabolic process
biological_process GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione
biological_process GO:0046854 phosphatidylinositol phosphorylation
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0019872 streptomycin biosynthetic process
biological_process GO:0019852 L-ascorbic acid metabolic process
biological_process GO:0006749 glutathione metabolic process
biological_process GO:0006289 nucleotide-excision repair
biological_process GO:0006306 DNA methylation
biological_process GO:0000737 DNA catabolic process, endonucleolytic
biological_process GO:0006096 glycolytic process
biological_process GO:0042744 hydrogen peroxide catabolic process
biological_process GO:0006285 base-excision repair, AP site formation
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0006508 proteolysis
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0009733 response to auxin
biological_process GO:0050794 regulation of cellular process
biological_process GO:0009058 biosynthetic process
biological_process GO:0016049 cell growth
biological_process GO:0016043 cellular component organization
biological_process GO:0048869 cellular developmental process
biological_process GO:0060560 developmental growth involved in morphogenesis
biological_process GO:1901576 organic substance biosynthetic process
biological_process GO:0044238 primary metabolic process
biological_process GO:0010817 regulation of hormone levels
biological_process GO:0010015 root morphogenesis
biological_process GO:0008152 metabolic process
biological_process GO:0051604 protein maturation
biological_process GO:0006754 ATP biosynthetic process
biological_process GO:0032880 regulation of protein localization
biological_process GO:0009651 response to salt stress
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0010075 regulation of meristem growth
biological_process GO:0008361 regulation of cell size
biological_process GO:0009664 plant-type cell wall organization
biological_process GO:0009832 plant-type cell wall biogenesis
biological_process GO:0007389 pattern specification process
biological_process GO:0009926 auxin polar transport
biological_process GO:0048653 anther development
biological_process GO:0015986 ATP synthesis coupled proton transport
cellular_component GO:0012505 endomembrane system
cellular_component GO:0044428 nuclear part
cellular_component GO:0005737 cytoplasm
cellular_component GO:0009523 photosystem II
cellular_component GO:0005829 cytosol
cellular_component GO:0009507 chloroplast
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0005634 nucleus
cellular_component GO:0009840 chloroplastic endopeptidase Clp complex
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0005840 ribosome
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005739 mitochondrion
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009535 chloroplast thylakoid membrane
molecular_function GO:0008660 1-aminocyclopropane-1-carboxylate deaminase activity
molecular_function GO:0050897 cobalt ion binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0019148 D-cysteine desulfhydrase activity
molecular_function GO:0016757 transferase activity, transferring glycosyl groups
molecular_function GO:0004252 serine-type endopeptidase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0004386 helicase activity
molecular_function GO:0019843 rRNA binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0005515 protein binding
molecular_function GO:0046914 transition metal ion binding
molecular_function GO:0004364 glutathione transferase activity
molecular_function GO:0045174 glutathione dehydrogenase (ascorbate) activity
molecular_function GO:0008934 inositol monophosphate 1-phosphatase activity
molecular_function GO:0008534 oxidized purine nucleobase lesion DNA N-glycosylase activity
molecular_function GO:0003684 damaged DNA binding
molecular_function GO:0052832 inositol monophosphate 3-phosphatase activity
molecular_function GO:0052833 inositol monophosphate 4-phosphatase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0046983 protein dimerization activity
RNA-Seq Expression