Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGTCCACCCTTTTCCTCTCCAAACCTCTTCCGACCACCATCAAAACCACCACCCACTCTCTCTCCTCCGTCTACCCAAACCCCTTCAAACCCAACAACCTCACATTCCCCCGCACCACCCACAAACACCCCACCACCACCACTATCACCGCTGCAATCAGCCGCACAAAGAAGGAAGAAACAGTGGAAACAGTACAGAAGCACCTCGAAAACTGCTACCTTTTAGCCGCAATCAACTACAAGGGTTTCACTGTCAAGCAATTCCAAGATCTCAGGAAAGCACTCCCGGAAAATACAACCTTAATTGTTGCTAAAAATACCCTTGTTGAGAAAGCAGTACAGGACACACAATGGGCAGCCATTAAACCTTGTATGAAAGGCATGAATGCTTGGCTTTTTGTTCATTCTGAAGAAATCCCAATTGCAATTAAGCCTTATAGAACTTTCCAGAAGGAGAGGAAGCTTGAGGATAATGACTTCACTGGTGCTTGTTTTGAGGGTAAGTTTTATGGGCCTGGTGAGGTCAAGAGATTGGAGACAATGCCTTCAAAGGCTGAGATTTTCGCGAAATTGCTCGGTTCTTTGAAGAGTCCTGGAAGTGCTCTTGTGGGTACTTTGCAGGCTCCTGCTAGGGATTTGGTGTTTCTTTTGAAGGCTTATATTAAGAAGCTTGAGGATGAGCAGCAGCAAGGCTGA ATGGAGTCCACCCTTTTCCTCTCCAAACCTCTTCCGACCACCATCAAAACCACCACCCACTCTCTCTCCTCCGTCTACCCAAACCCCTTCAAACCCAACAACCTCACATTCCCCCGCACCACCCACAAACACCCCACCACCACCACTATCACCGCTGCAATCAGCCGCACAAAGAAGGAAGAAACAGTGGAAACAGTACAGAAGCACCTCGAAAACTGCTACCTTTTAGCCGCAATCAACTACAAGGGTTTCACTGTCAAGCAATTCCAAGATCTCAGGAAAGCACTCCCGGAAAATACAACCTTAATTGTTGCTAAAAATACCCTTGTTGAGAAAGCAGTACAGGACACACAATGGGCAGCCATTAAACCTTGTATGAAAGGCATGAATGCTTGGCTTTTTGTTCATTCTGAAGAAATCCCAATTGCAATTAAGCCTTATAGAACTTTCCAGAAGGAGAGGAAGCTTGAGGATAATGACTTCACTGGTGCTTGTTTTGAGGGTAAGTTTTATGGGCCTGGTGAGGTCAAGAGATTGGAGACAATGCCTTCAAAGGCTGAGATTTTCGCGAAATTGCTCGGTTCTTTGAAGAGTCCTGGAAGTGCTCTTGTGGGTACTTTGCAGGCTCCTGCTAGGGATTTGGTGTTTCTTTTGAAGGCTTATATTAAGAAGCTTGAGGATGAGCAGCAGCAAGGCTGA ATGGAGTCCACCCTTTTCCTCTCCAAACCTCTTCCGACCACCATCAAAACCACCACCCACTCTCTCTCCTCCGTCTACCCAAACCCCTTCAAACCCAACAACCTCACATTCCCCCGCACCACCCACAAACACCCCACCACCACCACTATCACCGCTGCAATCAGCCGCACAAAGAAGGAAGAAACAGTGGAAACAGTACAGAAGCACCTCGAAAACTGCTACCTTTTAGCCGCAATCAACTACAAGGGTTTCACTGTCAAGCAATTCCAAGATCTCAGGAAAGCACTCCCGGAAAATACAACCTTAATTGTTGCTAAAAATACCCTTGTTGAGAAAGCAGTACAGGACACACAATGGGCAGCCATTAAACCTTGTATGAAAGGCATGAATGCTTGGCTTTTTGTTCATTCTGAAGAAATCCCAATTGCAATTAAGCCTTATAGAACTTTCCAGAAGGAGAGGAAGCTTGAGGATAATGACTTCACTGGTGCTTGTTTTGAGGGTAAGTTTTATGGGCCTGGTGAGGTCAAGAGATTGGAGACAATGCCTTCAAAGGCTGAGATTTTCGCGAAATTGCTCGGTTCTTTGAAGAGTCCTGGAAGTGCTCTTGTGGGTACTTTGCAGGCTCCTGCTAGGGATTTGGTGTTTCTTTTGAAGGCTTATATTAAGAAGCTTGAGGATGAGCAGCAGCAAGGCTGA MESTLFLSKPLPTTIKTTTHSLSSVYPNPFKPNNLTFPRTTHKHPTTTTITAAISRTKKEETVETVQKHLENCYLLAAINYKGFTVKQFQDLRKALPENTTLIVAKNTLVEKAVQDTQWAAIKPCMKGMNAWLFVHSEEIPIAIKPYRTFQKERKLEDNDFTGACFEGKFYGPGEVKRLETMPSKAEIFAKLLGSLKSPGSALVGTLQAPARDLVFLLKAYIKKLEDEQQQG Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo16436.1 vs. NCBI nr
Match: gi|902201840|gb|KNA14105.1| (hypothetical protein SOVF_110360 [Spinacia oleracea]) HSP 1 Score: 462.6 bits (1189), Expect = 4.000e-127 Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 1
BLAST of Spo16436.1 vs. NCBI nr
Match: gi|731362825|ref|XP_010693095.1| (PREDICTED: 50S ribosomal protein L10, chloroplastic [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 359.0 bits (920), Expect = 6.300e-96 Identity = 184/233 (78.97%), Postives = 206/233 (88.41%), Query Frame = 1
BLAST of Spo16436.1 vs. NCBI nr
Match: gi|802540314|ref|XP_012075838.1| (PREDICTED: 50S ribosomal protein L10, chloroplastic [Jatropha curcas]) HSP 1 Score: 298.5 bits (763), Expect = 1.000e-77 Identity = 154/232 (66.38%), Postives = 186/232 (80.17%), Query Frame = 1
BLAST of Spo16436.1 vs. NCBI nr
Match: gi|1009120791|ref|XP_015877114.1| (PREDICTED: 50S ribosomal protein L10, chloroplastic-like [Ziziphus jujuba]) HSP 1 Score: 295.0 bits (754), Expect = 1.100e-76 Identity = 155/238 (65.13%), Postives = 184/238 (77.31%), Query Frame = 1
BLAST of Spo16436.1 vs. NCBI nr
Match: gi|595797363|ref|XP_007201264.1| (hypothetical protein PRUPE_ppa010824mg [Prunus persica]) HSP 1 Score: 293.9 bits (751), Expect = 2.500e-76 Identity = 154/236 (65.25%), Postives = 185/236 (78.39%), Query Frame = 1
BLAST of Spo16436.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R3N5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_110360 PE=3 SV=1) HSP 1 Score: 462.6 bits (1189), Expect = 2.800e-127 Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 1
BLAST of Spo16436.1 vs. UniProtKB/TrEMBL
Match: A0A0J8E862_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g045880 PE=3 SV=1) HSP 1 Score: 359.0 bits (920), Expect = 4.400e-96 Identity = 184/233 (78.97%), Postives = 206/233 (88.41%), Query Frame = 1
BLAST of Spo16436.1 vs. UniProtKB/TrEMBL
Match: A0A067LF88_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15458 PE=3 SV=1) HSP 1 Score: 298.5 bits (763), Expect = 7.000e-78 Identity = 154/232 (66.38%), Postives = 186/232 (80.17%), Query Frame = 1
BLAST of Spo16436.1 vs. UniProtKB/TrEMBL
Match: M5VZQ9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010824mg PE=3 SV=1) HSP 1 Score: 293.9 bits (751), Expect = 1.700e-76 Identity = 154/236 (65.25%), Postives = 185/236 (78.39%), Query Frame = 1
BLAST of Spo16436.1 vs. UniProtKB/TrEMBL
Match: B9RY97_RICCO (50S ribosomal protein L10, putative OS=Ricinus communis GN=RCOM_0811410 PE=3 SV=1) HSP 1 Score: 292.4 bits (747), Expect = 5.000e-76 Identity = 155/232 (66.81%), Postives = 183/232 (78.88%), Query Frame = 1
BLAST of Spo16436.1 vs. ExPASy Swiss-Prot
Match: RK10_TOBAC (50S ribosomal protein L10, chloroplastic OS=Nicotiana tabacum GN=RPL10 PE=2 SV=1) HSP 1 Score: 288.9 bits (738), Expect = 5.000e-77 Identity = 150/230 (65.22%), Postives = 181/230 (78.70%), Query Frame = 1
BLAST of Spo16436.1 vs. ExPASy Swiss-Prot
Match: RK10_ARATH (50S ribosomal protein L10, chloroplastic OS=Arabidopsis thaliana GN=RPL10 PE=2 SV=1) HSP 1 Score: 270.0 bits (689), Expect = 2.400e-71 Identity = 131/193 (67.88%), Postives = 160/193 (82.90%), Query Frame = 1
BLAST of Spo16436.1 vs. ExPASy Swiss-Prot
Match: RL10_THEP1 (50S ribosomal protein L10 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rplJ PE=3 SV=1) HSP 1 Score: 88.2 bits (217), Expect = 1.300e-16 Identity = 54/175 (30.86%), Postives = 93/175 (53.14%), Query Frame = 1
BLAST of Spo16436.1 vs. ExPASy Swiss-Prot
Match: RL10_THESQ (50S ribosomal protein L10 OS=Thermotoga sp. (strain RQ2) GN=rplJ PE=3 SV=1) HSP 1 Score: 88.2 bits (217), Expect = 1.300e-16 Identity = 54/175 (30.86%), Postives = 93/175 (53.14%), Query Frame = 1
BLAST of Spo16436.1 vs. ExPASy Swiss-Prot
Match: RL10_PROMP (50S ribosomal protein L10 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rplJ PE=3 SV=1) HSP 1 Score: 88.2 bits (217), Expect = 1.300e-16 Identity = 48/170 (28.24%), Postives = 93/170 (54.71%), Query Frame = 1
BLAST of Spo16436.1 vs. TAIR (Arabidopsis)
Match: AT5G13510.1 (Ribosomal protein L10 family protein) HSP 1 Score: 270.0 bits (689), Expect = 1.300e-72 Identity = 131/193 (67.88%), Postives = 160/193 (82.90%), Query Frame = 1
BLAST of Spo16436.1 vs. TAIR (Arabidopsis)
Match: AT3G12370.1 (Ribosomal protein L10 family protein) HSP 1 Score: 171.8 bits (434), Expect = 5.000e-43 Identity = 82/144 (56.94%), Postives = 105/144 (72.92%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo16436.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo16436.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo16436.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo16436.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 2
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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