Spo16462 (gene)

Overview
NameSpo16462
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr2 : 39415514 .. 39416326 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCTGTACCAGGGTCTAATCCTGGTATTATAGTGGAAATTGTTTCGTAATCGCATTTGGTTCAGAGCTTTCATCCGAAGGAAATGTGGAAGAAGTGGCTCACCGCCTTTTTTGCCAGAATTCTTTCTAGTTACCTTCTGACCACTCTTGATTCTCCCATTTCTGTATTTTGAATTTGGTATCACGACTGTCTTATTTCTGATATGTTGGGGTGTTATATTCTGCATTCTTTATAGTCTTACAAGCCAAATTTTGATCATGACACTAATTGCCATTTAATATGCTGATTATTTCAAGTACCTTAATTCAACAGGAACCTATTTTTGTGAGTTTTGGACTCTTTGGGTTGTCGCGAATCTTCTTTGAAGTCGACTTAATTTGTCATCTGGTTATACACCAAACCATACATATACTATTAGCTTCAATTCTCTGCAAGAAGTTTCAAAACTTTCCTGCAAAGGTTCCAAGTACTTTCCGCAGTCAGCCAACTGGAAGTCATATCTCTCAATTCGAGCTCAGCTTGAATTTGCTGGAAGTCGGGGTGAAACAGTGAAAAGTGGAAAGGAATCAAACATTAGATTTACACAAAGATTATATTTGAGATTTACAAGCTATAATTCCAAAGCATGTCATGTAAATAAGTTCATTACCTTTGTGCTTAAGCATATGAAATGTAAGTTTTATACAACAGTTTATTTACTATTTCTGGTATTCTTGGTTGCATAGGTGTAATTAACATTTTGAGAACAAAACACATTTCACTTTGGTTACCTCTAATTTGGAATTTATTTTGCCTGAATAGGTTTGAAC

mRNA sequence

ATGAATCTGTACCAGGGTCTAATCCTGGAACCTATTTTTGTGAGTTTTGGACTCTTTGGGTTGTCGCGAATCTTCTTTGAAGTCGACTTAATTTGTCATCTGGTTATACACCAAACCATACATATACTATTAGCTTCAATTCTCTGCAAGAAGTTTCAAAACTTTCCTGCAAAGGTTCCAAGTACTTTCCGCAGTCAGCCAACTGGAAGTCATATCTCTCAATTCGAGCTCAGCTTGAATTTGCTGGAAGTCGGGGTGAAACAGTGAAAAGTGGAAAGGAATCAAACATTAGATTTACACAAAGATTATATTTGAGATTTACAAGCTATAATTCCAAAGCATGTCATGTAAATAAGTTCATTACCTTTGTGCTTAAGCATATGAAATGTAAGTTTTATACAACAGTTTATTTACTATTTCTGGTATTCTTGGTTGCATAGGTGTAATTAACATTTTGAGAACAAAACACATTTCACTTTGGTTACCTCTAATTTGGAATTTATTTTGCCTGAATAGGTTTGAAC

Coding sequence (CDS)

ATGAATCTGTACCAGGGTCTAATCCTGGAACCTATTTTTGTGAGTTTTGGACTCTTTGGGTTGTCGCGAATCTTCTTTGAAGTCGACTTAATTTGTCATCTGGTTATACACCAAACCATACATATACTATTAGCTTCAATTCTCTGCAAGAAGTTTCAAAACTTTCCTGCAAAGGTTCCAAGTACTTTCCGCAGTCAGCCAACTGGAAGTCATATCTCTCAATTCGAGCTCAGCTTGAATTTGCTGGAAGTCGGGGTGAAACAGTGA

Protein sequence

MNLYQGLILEPIFVSFGLFGLSRIFFEVDLICHLVIHQTIHILLASILCKKFQNFPAKVPSTFRSQPTGSHISQFELSLNLLEVGVKQ
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo16462.1Spo16462.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo16462.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo16462.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo16462.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo16462.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0009507 chloroplast
cellular_component GO:0016020 membrane
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo168260.70Barchart | Table
Spo171030.67Barchart | Table
Spo055340.66Barchart | Table